BAC Information

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BAC

Clone NameB6Ng01-078N09
Chromosome12 (Build37)
Map Location 19,476,832 - 19,612,813
singlet/doubletdoublet
Overlap geneEG627871, LOC100042698, LOC629055, EG668588
Upstream gene5730507C01Rik, EG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848
Downstream geneLOC100042706, EG668594, EG668600, LOC100042727, LOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078N09.bB6Ng01-078N09.g
ACCDH894427DH894428
length1,0941,138
definitionDH894427|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N09, 5' end.DH894428|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,611,710 - 19,612,813)(19,476,832 - 19,477,983)
sequence
gaattccgacacggagatctggtccagcatcgccagggcgccggggcgcg
gactgcggccgcctcagtcgcccagggcgcgggctccgaccccgctgctg
ctcggggacttgaacaaagggaagcgcgggcgcggaagtcgccgcggggc
gcgggagccaccgcggcaggcccggggcagcaggggcgcgcgcagcccac
agctctgcccgctgtgctccgggagctgcagctaccgagtcctctgcgaa
ggagcccagacgccagcgcgcacagtcaaggggaactgcgcgccaccaag
ccactgtccgggacgcctcccgcggaaaggggagggcccggctggagagg
gcgcggaggcccgcccggcggggcggggcggggcgcaggcctggccgcca
atcgggtcgcccgccgctaccgtgccgccaggaagcggaggcctcagcaa
ggagggctacatgcgctcagggcctgtcagtggctgtgggctgctgcatt
acctctgccttccggacgtgctggggttcgagggcacgccctgtcataag
ctgcgatgcccggctcccaccccgcacccgccatgacctctagcaacatt
gcccaaagggcgtggagtggatactagcttccaggctggaagggagccca
cccttttgctccccaatcccaacgttagcctcagaaccccctgaatcccc
caccagaacctcaggaaagggccagtgagacagtgtgggtagctcgcccc
ctacaagacagtgaaatcctccagggcactttagagggacaagatgtagg
gacagttagttggggatgcaatgatagggaccatgttctgtctgtgctcc
ttctcacagccttaagaagccagggataaaggataaaggcaggtgttttg
catagggagttgaccatggtacaagccgaatggaaattcaaacccatgac
cttcgacttggaagaatactccacccctattagcatcctgttcccctaag
cttgtacattagggacactcccagttacttgaagacaggttaggtgctag
caggctcaccctgagaaaaatcatagatgcatgatgtctgtggg
gaattcatcaggtagactgaagtgaaagttagccctagtggatgaaaggt
tggttggtttctgttaagcacagaagaccatgtggtaatctgggttcaaa
gcattctttttggattatgttttctcgagacagagtctcactatgtagtc
ctggcttacctggaactcactatggagatcaggctggcctcaaactcaca
gagatctatctgtccctgcctctcaagtgctgggattcaaggcatgtacc
actatgcctggatttcaaaatgttctttcatttccaatcagggagatact
ttgaaaatgcaaaccttcttgaagaggtttggtgactttccatgagcaga
caacctgagtttgatcctgtgacctaaatcatgggaagatagaacaacca
attcctgcaagttgccctctgacctcatgctagggcaaatgcacactccc
ttatttgtatgctccagccccacccctcccaaacactaattgtgtaatga
taaataaagcaggaactggggctgaagaggtggctcagtagttaagagca
atgtttgctcttccaggggtcctgagttcaatttcaagcaaccacatggt
ggctcacaaccatctgtattggggtctgatggtctcttctagtgtgcctg
aaaacagctacattgtactcatatgcatacaatagataaacctttaaaaa
aataaagcaagaactgagtgaggaagtacctgagtcaatagactgtggtt
caatctctgggtacaagcaaggttggagaagaagtgaggcagcacagtca
ggcattttgggccatgaaggatctcttagagcatattgaagaatttaggg
tttattcgtagactgtagggagaccctggaatattttgagtcgcttaaaa
ctacatttgcttcttagaaggatcactatgggtaagagtctggcacccag
taacaggtgattggaaagtcattaacccagagatgagagatttattataa
aattacacttgcagatgaggagagacctaatggataaggcacatgcgaaa
tgagggctaaggacacagtgccatggataattaactggaaaatcatcaat
gacacgtgattcgtgccaactgattgtcattagttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_19611710_19612813
seq2: B6Ng01-078N09.b_45_1138 (reverse)

seq1  CCCACAGCACATCACTGCATTCTATGATTTTTCTCAGGGTGAAGCCTGGC  50
      ||||||| |||||| |||| ||||||||||||||||||||| ||||||  
seq2  CCCACAG-ACATCA-TGCA-TCTATGATTTTTCTCAGGGTG-AGCCTG--  44

seq1  CTAGCACCCTAAAACTGTCTTCAAGTAACTGGGAGTGTCCCTAATTGTAC  100
      ||||||||   || |||||||||||||||||||||||||||||| |||||
seq2  CTAGCACC--TAACCTGTCTTCAAGTAACTGGGAGTGTCCCTAA-TGTAC  91

seq1  AAGCTTAGGGG-ACAGGATGCTTAATAGGGGTTGGAGTATTCTTCCAAGT  149
      ||||||||||| ||||||||| ||||||||| ||||||||||||||||||
seq2  AAGCTTAGGGGAACAGGATGC-TAATAGGGG-TGGAGTATTCTTCCAAGT  139

seq1  CGAAGGTCATGGGTTTGAATTTCCATTCGGCTTGTACCATGGTCAACTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTCATGGGTTTGAATTTCCATTCGGCTTGTACCATGGTCAACTCC  189

seq1  CTATGCAAAACACCTGCCTTTATCCTTTATCCCTGGCTTCTTAAGGCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAAAACACCTGCCTTTATCCTTTATCCCTGGCTTCTTAAGGCTGT  239

seq1  GAGAAGGAGCACAGACAGAACATGGTCCCTATCATTGCATCCCCAACTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAGCACAGACAGAACATGGTCCCTATCATTGCATCCCCAACTAA  289

seq1  CTGTCCCTACATCTTGTCCCTCTAAAGTGCCCTGGAGGATTTCACTGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTACATCTTGTCCCTCTAAAGTGCCCTGGAGGATTTCACTGTCT  339

seq1  TGTAGGGGGCGAGCTACCCACACTGTCTCACTGGCCCTTTCCTGAGGTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGGCGAGCTACCCACACTGTCTCACTGGCCCTTTCCTGAGGTTC  389

seq1  TGGTGGGGGATTCAGGGGGTTCTGAGGCTAACGTTGGGATTGGGGAGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGGATTCAGGGGGTTCTGAGGCTAACGTTGGGATTGGGGAGCAA  439

seq1  AAGGGTGGGCTCCCTTCCAGCCTGGAAGCTAGTATCCACTCCACGCCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGGCTCCCTTCCAGCCTGGAAGCTAGTATCCACTCCACGCCCTT  489

seq1  TGGGCAATGTTGCTAGAGGTCATGGCGGGTGCGGGGTGGGAGCCGGGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATGTTGCTAGAGGTCATGGCGGGTGCGGGGTGGGAGCCGGGCAT  539

seq1  CGCAGCTTATGACAGGGCGTGCCCTCGAACCCCAGCACGTCCGGAAGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTTATGACAGGGCGTGCCCTCGAACCCCAGCACGTCCGGAAGGCA  589

seq1  GAGGTAATGCAGCAGCCCACAGCCACTGACAGGCCCTGAGCGCATGTAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATGCAGCAGCCCACAGCCACTGACAGGCCCTGAGCGCATGTAGC  639

seq1  CCTCCTTGCTGAGGCCTCCGCTTCCTGGCGGCACGGTAGCGGCGGGCGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGCTGAGGCCTCCGCTTCCTGGCGGCACGGTAGCGGCGGGCGAC  689

seq1  CCGATTGGCGGCCAGGCCTGCGCCCCGCCCCGCCCCGCCGGGCGGGCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTGGCGGCCAGGCCTGCGCCCCGCCCCGCCCCGCCGGGCGGGCCTC  739

seq1  CGCGCCCTCTCCAGCCGGGCCCTCCCCTTTCCGCGGGAGGCGTCCCGGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCCCTCTCCAGCCGGGCCCTCCCCTTTCCGCGGGAGGCGTCCCGGAC  789

seq1  AGTGGCTTGGTGGCGCGCAGTTCCCCTTGACTGTGCGCGCTGGCGTCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGGTGGCGCGCAGTTCCCCTTGACTGTGCGCGCTGGCGTCTGG  839

seq1  GCTCCTTCGCAGAGGACTCGGTAGCTGCAGCTCCCGGAGCACAGCGGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCGCAGAGGACTCGGTAGCTGCAGCTCCCGGAGCACAGCGGGCA  889

seq1  GAGCTGTGGGCTGCGCGCGCCCCTGCTGCCCCGGGCCTGCCGCGGTGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGGGCTGCGCGCGCCCCTGCTGCCCCGGGCCTGCCGCGGTGGCT  939

seq1  CCCGCGCCCCGCGGCGACTTCCGCGCCCGCGCTTCCCTTTGTTCAAGTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGCCCCGCGGCGACTTCCGCGCCCGCGCTTCCCTTTGTTCAAGTCC  989

seq1  CCGAGCAGCAGCGGGGTCGGAGCCCGCGCCCTGGGCGACTGAGGCGGCCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCAGCAGCGGGGTCGGAGCCCGCGCCCTGGGCGACTGAGGCGGCCG  1039

seq1  CAGTCCGCGCCCCGGCGCCCTGGCGATGCTGGACCAGATCTCCGTGTCGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCGCGCCCCGGCGCCCTGGCGATGCTGGACCAGATCTCCGTGTCGG  1089

seq1  AATTC  1104
      |||||
seq2  AATTC  1094

seq1: chr12_19476832_19477983
seq2: B6Ng01-078N09.g_70_1207

seq1  GAATTCATCAGGTAGACTGAAGTGAAAGTTAGCCCTAGTGGATGAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGGTAGACTGAAGTGAAAGTTAGCCCTAGTGGATGAAAGGT  50

seq1  TGGTTGGTTTCTGTTAAGCACAGAAGACCATGTGGTAATCTGGGTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTTCTGTTAAGCACAGAAGACCATGTGGTAATCTGGGTTCAAA  100

seq1  GCATTCTTTTTGGATTATGTTTTCTCGAGACAGAGTCTCACTATGTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTTTTGGATTATGTTTTCTCGAGACAGAGTCTCACTATGTAGTC  150

seq1  CTGGCTTACCTGGAACTCACTATGGAGATCAGGCTGGCCTCAAACTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTACCTGGAACTCACTATGGAGATCAGGCTGGCCTCAAACTCACA  200

seq1  GAGATCTATCTGTCCCTGCCTCTCAAGTGCTGGGATTCAAGGCATGTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTATCTGTCCCTGCCTCTCAAGTGCTGGGATTCAAGGCATGTACC  250

seq1  ACTATGCCTGGATTTCAAAATGTTCTTTCATTTCCAATCAGGGAGATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCTGGATTTCAAAATGTTCTTTCATTTCCAATCAGGGAGATACT  300

seq1  TTGAAAATGCAAACCTTCTTGAAGAGGTTTGGTGACTTTCCATGAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATGCAAACCTTCTTGAAGAGGTTTGGTGACTTTCCATGAGCAGA  350

seq1  CAACCTGAGTTTGATCCTGTGACCTAAATCATGGGAAGATAGAACAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGAGTTTGATCCTGTGACCTAAATCATGGGAAGATAGAACAACCA  400

seq1  ATTCCTGCAAGTTGCCCTCTGACCTCATGCTAGGGCAAATGCACACTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCAAGTTGCCCTCTGACCTCATGCTAGGGCAAATGCACACTCCC  450

seq1  TTATTTGTATGCTCCAGCCCCACCCCTCCCAAACACTAATTGTGTAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTATGCTCCAGCCCCACCCCTCCCAAACACTAATTGTGTAATGA  500

seq1  TAAATAAAGCAGGAACTGGGGCTGAAGAGGTGGCTCAGTAGTTAAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGCAGGAACTGGGGCTGAAGAGGTGGCTCAGTAGTTAAGAGCA  550

seq1  ATGTTTGCTCTTCCAGGGGTCCTGAGTTCAATTTCAAGCAACCACATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCTCTTCCAGGGGTCCTGAGTTCAATTTCAAGCAACCACATGGT  600

seq1  GGCTCACAACCATCTGTATTGGGGTCTGATGGTCTCTTCTAGTGTGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAACCATCTGTATTGGGGTCTGATGGTCTCTTCTAGTGTGCCTG  650

seq1  AAAACAGCTACATTGTACTCATATGCATACAATAGATAAACCTTTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCTACATTGTACTCATATGCATACAATAGATAAACCTTTAAAAA  700

seq1  AATAAAGCAAGAACTGAGTGAGGAAGTACCTGAGTCAATAGACTGTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAAGAACTGAGTGAGGAAGTACCTGAGTCAATAGACTGTGGTT  750

seq1  CAATCTCTGGGTACAAGCAAGGTTGGAGAAGAAGTGAGGCAGCACAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTGGGTACAAGCAAGGTTGGAGAAGAAGTGAGGCAGCACAGTCA  800

seq1  GGCATTTTGGGCCATGAAGGATCTCTTAGAGCATATTGAAGAATTTAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTGGGCCATGAAGGATCTCTTAGAGCATATTGAAGAATTTAGGG  850

seq1  TTTATTCGTAGACTGTAGGGAGACCCTGGAATATTTTGAGTCGCTTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCGTAGACTGTAGGGAGACCCTGGAATATTTTGAGTCGCTTAAAA  900

seq1  CTACATTTGCTTCTTAGAAGGATCACTATGGGTAAGAGTCTGGCACCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTGCTTCTTAGAAGGATCACTATGGGTAAGAGTCTGGCACCCAG  950

seq1  TAAACAGGGTGATTGGAAAGTTCATTAACCCAGAGATGAGAAGATTTATT  1000
      | |||| ||||||||||||| ||||||||||||||||||| |||||||||
seq2  T-AACA-GGTGATTGGAAAG-TCATTAACCCAGAGATGAG-AGATTTATT  996

seq1  ATAAAATAACACTTGCAGATGAGGAGAGACCTAAATGGATAAGGGCACAA  1050
      ||||||| |||||||||||||||||||||||| ||||||||| ||||| |
seq2  ATAAAATTACACTTGCAGATGAGGAGAGACCT-AATGGATAA-GGCAC-A  1043

seq1  TGCGAAATGAGGGCTCAGGACCACAGTGCCCATGGATAATAAACTGAAAT  1100
      ||||||||||||||| |||| ||||||| ||||||||||| ||||| || 
seq2  TGCGAAATGAGGGCTAAGGA-CACAGTG-CCATGGATAATTAACTGGAAA  1091

seq1  ATCCAATCCAATGACACGTGGATTCGTTGCCAACTGATTGTCATTAGTTG  1150
      |||  || ||||||||||| |||||| |||||||||||||||||||||||
seq2  ATC--AT-CAATGACACGT-GATTCG-TGCCAACTGATTGTCATTAGTTG  1136

seq1  AA  1152
      ||
seq2  AA  1138