BAC Information

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BAC

Clone NameB6Ng01-082N17
Chromosome12 (Build37)
Map Location 32,875,711 - 32,876,825
singlet/doubletsinglet
Overlap genePik3cg
Upstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
Downstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082N17.bB6Ng01-082N17.g
ACCDH897289DH897290
length1,2331,106
definitionDH897289|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N17, 5' end.DH897290|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaaaagaggaaactcaagtgggtcaaaaccacttagaaatgtt
caacatccttagtcatcaaggaaatgcaaatcaaaactactttgaaattt
catcatacactaatcagaatgtaagatcaataagatcaataaaacaagcg
acagctcatactagcaagcataaggagccaggggaatgttcatcctttgc
tggagggagtgcaagcttatgcaaccactatcacaatcagtatggcaggt
tcccatatcccaagagccagctctaccaacatactcctcaaatggcccta
aattttagccatctttcccatattccctcccttaacccctctcttctccc
ttcccccacttgttcctcctgttctagctccttctccatctatccataac
tatctgttctatttccctgtcctaataagatctgtctgtagcttctagac
tcatattctacatcttccaagtaaacaaggacttctataccaacatgatc
aaaactcataaactcacatagactgaggcaacatgcacaaaccttgtgtg
gctctgcaccagatattctgattataaatattattatttccagtatagtg
tttttatgagatccctgagtgtgagcccaaatgggtcttggatcattgta
tcttctctgtcttgtccaactctgttgtgttagtttttgttttattttac
tgttttatctttattccttagaattactattcttctttagaattattatt
ctttagaaacattcttttcctttggaatcattactgcttagaagcctgtc
tgttttctaatgagcaacagaaagggagtggaggagaaggaggtagagag
gaacaggaaggagtagaggaagggtaaaccataatcaggacatattatgt
gaggaaaaagctatttccataaaggaaattatttttaaaaaagagtttaa
agtttcactaatgcatgtaaacatgtatgaaatagtacagaccaaaattg
tgcttttataagaaaattataagaaccatgttcttttcttgaataactaa
tgatgtcggctactataagtctatttagtttgtccaaaataaattaggag
atatccaataggataaaagcactcgtagtattggtaattggagagcgaat
ctgatgttcgtagaacataggcagtccatgttacctgcatcgacttagga
catagtctgtactgaattcagatctccagttct
gaattccatgcatttatctaacacattctgagctgttgtcatgccctgtc
tgaagctagtcatatcaacctcactttcaagagagtaaaactgagcgctt
tctcttctttaagtagtaaagtccttctgctccccccatgaaatgtgtcc
agtttttggaaactgtctgaaacccaactgagtgtgtgcaaaagagcaca
tacccaaactcctaaaactgagccgagagtgtgagtcatgccattaccaa
caagacagccagccagtagatcaaagcacaagttacaaaacaacacgagg
aagtagctcttcccctatagttcaaggcgcatgtcctttcccaagctcat
gctggatttgaaggaaaagccttctccctcagatgtggagtgcaaatcaa
accacagtgaaggcacactaaggaaggtggctgtgttcagacaaggcaag
gcaaaggtcactcttggtttctgttttgtgactctgttgttatatattca
gtatgcttacaaattttctgaattgtattcattcacagctattataagat
gctctcattgtgtgtttatatccaaatactcctgtgggggcttgtttgca
ggctagtggaaccagagctcacagcagagcctgtggccaagctgatgaga
ctgccaacaagaaaaggactactcttaataccagcaaaatcagtatgtgc
aacaagattcccctgttggtattatgataagtacacacacagtaccaaaa
atcaagtgaagctcacgattgtttgcaagccccgaaacatagttgaagtt
tgaatcttctactcaaagccttgagtagatcagtctccataactgtcctt
ctttgaagctgtcctgagcacctagcctgccctcagaggtctgtggtccc
cggggccaccccttatggagcatttttacttgctgtttggttttagtgag
caaatccctgaaagcctcactttgtatgtccttgtgatgacagagtgaga
ggaggaaagaaggcggcatatcataaggtaggagaaggcgatttctacag
tgttgatctgttgtactggcaggaggtgagaaggatgcggtacatacctg
gaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32875711_32876825
seq2: B6Ng01-082N17.g_70_1175

seq1  GAATTCCATGCATTTATCTAACACATTCTGAGCTGTTGTCATGCCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCATTTATCTAACACATTCTGAGCTGTTGTCATGCCCTGTC  50

seq1  TGAAGCTAGTCATATCAACCTCACTTTCAAGAGAGTAAAACTGAGCGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTAGTCATATCAACCTCACTTTCAAGAGAGTAAAACTGAGCGCTT  100

seq1  TCTCTTCTTTAAGTAGTAAAGTCCTTCTGCTCCCCCCATGAAATGTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTTTAAGTAGTAAAGTCCTTCTGCTCCCCCCATGAAATGTGTCC  150

seq1  AGTTTTTGGAAACTGTCTGAAACCCAACTGAGTGTGTGCAAAAGAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGGAAACTGTCTGAAACCCAACTGAGTGTGTGCAAAAGAGCACA  200

seq1  TACCCAAACTCCTAAAACTGAGCCGAGAGTGTGAGTCATGCCATTACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAACTCCTAAAACTGAGCCGAGAGTGTGAGTCATGCCATTACCAA  250

seq1  CAAGACAGCCAGCCAGTAGATCAAAGCACAAGTTACAAAACAACACGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGCCAGCCAGTAGATCAAAGCACAAGTTACAAAACAACACGAGG  300

seq1  AAGTAGCTCTTCCCCTATAGTTCAAGGCGCATGTCCTTTCCCAAGCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTCTTCCCCTATAGTTCAAGGCGCATGTCCTTTCCCAAGCTCAT  350

seq1  GCTGGATTTGAAGGAAAAGCCTTCTCCCTCAGATGTGGAGTGCAAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTTGAAGGAAAAGCCTTCTCCCTCAGATGTGGAGTGCAAATCAA  400

seq1  ACCACAGTGAAGGCACACTAAGGAAGGTGGCTGTGTTCAGACAAGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTGAAGGCACACTAAGGAAGGTGGCTGTGTTCAGACAAGGCAAG  450

seq1  GCAAAGGTCACTCTTGGTTTCTGTTTTGTGACTCTGTTGTTATATATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTCACTCTTGGTTTCTGTTTTGTGACTCTGTTGTTATATATTCA  500

seq1  GTATGCTTACAAATTTTCTGAATTGTATTCATTCACAGCTATTATAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTACAAATTTTCTGAATTGTATTCATTCACAGCTATTATAAGAT  550

seq1  GCTCTCATTGTGTGTTTATATCCAAATACTCCTGTGGGGGCTTGTTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATTGTGTGTTTATATCCAAATACTCCTGTGGGGGCTTGTTTGCA  600

seq1  GGCTAGTGGAACCAGAGCTCACAGCAGAGCCTGTGGCCAAGCTGATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTGGAACCAGAGCTCACAGCAGAGCCTGTGGCCAAGCTGATGAGA  650

seq1  CTGCCAACAAGAAAAGGACTACTCTTAATACCAGCAAAATCAGTATGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACAAGAAAAGGACTACTCTTAATACCAGCAAAATCAGTATGTGC  700

seq1  AACAAGATTCCCCTGTTGGTATTATGATAAGTACACACACAGTACCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATTCCCCTGTTGGTATTATGATAAGTACACACACAGTACCAAAA  750

seq1  ATCAAGTGAAGCTCACGATTGTTTGCAAGCCCCGAAACATAGTTGAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGAAGCTCACGATTGTTTGCAAGCCCCGAAACATAGTTGAAGTT  800

seq1  TGAATCTTCTACTCAAAGCCTTGAGTAGATCAGTCTCCATAACTGTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTCTACTCAAAGCCTTGAGTAGATCAGTCTCCATAACTGTCCTT  850

seq1  CTTTGAAGCTGTCCTGAGCACCTAGCCTGCCCTCAGAGGTCTGTGGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCTGTCCTGAGCACCTAGCCTGCCCTCAGAGGTCTGTGGTCCC  900

seq1  CGGGGCCACCCCTTATGGAGCATTTTTACTTGCTGTTTGGTTTTAGTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCCACCCCTTATGGAGCATTTTTACTTGCTGTTTGGTTTTAGTGAG  950

seq1  CAAATCCCTGAAAGCCTCACTTTGTATGTCCTTGTGGAATGAACAGAGGT  1000
      ||||||||||||||||||||||||||||||||||||  ||| ||||| ||
seq2  CAAATCCCTGAAAGCCTCACTTTGTATGTCCTTGTG--ATG-ACAGA-GT  996

seq1  GAGGAGGAGGAAGGAGGGCGGCCATATCATAAGGGTAGGGAGAGGCGATT  1050
      || ||||||||| || ||||| |||||||||| ||||||   ||||||||
seq2  GA-GAGGAGGAAAGAAGGCGG-CATATCATAA-GGTAGGAGAAGGCGATT  1043

seq1  TCTACAGTG-TGATCGGTTTGTACTGGCAGGAGGTGAGGAGGACTGCGGT  1099
      ||||||||| ||||| | |||||||||||||||||||| |||| ||||||
seq2  TCTACAGTGTTGATCTG-TTGTACTGGCAGGAGGTGAGAAGGA-TGCGGT  1091

seq1  GACATACCTGGAATTT  1115
       |||||||||||||||
seq2  -ACATACCTGGAATTT  1106