BAC Information

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BAC

Clone NameB6Ng01-083I13
Chromosome12 (Build37)
Map Location 62,186,062 - 62,187,145
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083I13.bB6Ng01-083I13.g
ACCDH897772DH897773
length1,2291,064
definitionDH897772|Mus musculus domesticus DNA, BAC clone: B6Ng01-083I13, 5' end.DH897773|Mus musculus domesticus DNA, BAC clone: B6Ng01-083I13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccaatttttaatggggttattcgatt
ttctggagcccaccttcttgagttctttttatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacattgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatctatcaattcttgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtacccatatcttcgaggcttttcccttc
tttgtcctctataagtttcagtgtctctggttttatgtggagtttcttaa
tccacttagatttgaccttagtacaaggagataaaaatggatcaattctc
attcttctacatgatatccgctagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtaaaagatcaagt
gaccattggtttgtgggttcatctctgggtcttcatttctgttccattgg
attacttgtctgtcactataccagtacaatgcagtttttatcacaattgc
tctgtagtacagctttaggtcaggcatggtgattctaccagaggtgcttt
tgttcttgagaagagtttttgctatcctaggtgttttgttattcaagatg
aatctgctgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgctttgaatctgtagagtgcttttggcaagatagccattt
ttactatattgatcatgccaatccatgagcatgggatttctttccatctt
ctgagatcttctttaatttcttttcagagacttatcatacagatctttca
tttcttagttagagtcaagccaaggtatttcttttatttcttagttagag
tcacaccaatgtatttataattgttgtggatattggggagacgtgttctt
ctaatttttttatcagctgttatccttattgtagaaagccaggattgttg
aagtaattttactcgctactcactgagcgtttacaggttagagttcctgg
attttagatcctatatactatcatatacctgcaatggatttgactctctt
tcatgtaccctgatactgtgggatgcttgcagactcagacatgagtggag
tgacccggttcgatatagatgtcgattca
gaattcagaagtcatggagtggtgaccttagctgagactcatatcagtga
ggatatggaacctgtaaaagccacctcctatatccaggcatgaactgcct
gtagaggggtaagtaaatccaatccacccaccaaacttctgacctaatat
ttttcctgtctacagaaatgcaagggcaaagatgcagcaaaggccaaggg
aatagctaaccaataactgatccaacttgaaacccatccaatggcaggca
ccaattcctgacactattaatgatactctgttatgcttgcaaaaaggagc
ctattaggcttttagtatattttataatttaaaatatttggaaataaatt
taaaaatcaagcataaggaatgctttactccaaactatctcacaacatat
aatcttccatatgtatatattttatcaataaagagttattactagcagag
ttcttcagaatcatgatgtcctagtaactagtgaagtatgtagcaaataa
tcatatttatatatgcatatgaatgtataaataatatataagcattatta
actagttacatactgaaacagataatatacaatgggacactttcattgag
atggaatacaatgaaacaaaaagaactctggagagctatttggattaaca
aaatagcaactattgatatcagtgcgtcagttctttagaatgatgggaat
aatctacctcaaaatatacactcctgtgtacatacctaaagaacacttta
tcctaccacaagaactcttgcttaataatcatgtcattgattcataatag
ccagaaactggaataaaactaaatttccctcaaaagaaaaaaagaataaa
ggaaatatggtacacatatgcaatggagtatttctcagctgtaaaattat
attgcaaatttgcaagaaattggtaggactagaaaaaatatcctgaagag
tgatgcatagccagaaagacaatatgatatgtatgcagtatatgtaatat
tagtttttagtaatgataccagatgcatcaagagcaggagatagtaaaga
ggaaagactacggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62186062_62187145
seq2: B6Ng01-083I13.g_70_1133 (reverse)

seq1  CCCGTAGTCTTTTCCTCTGTAACTAATCTCCCTGGCTCTATGGATTGCAT  50
      ||||||||| |||||||| | ||| ||||||   ||||| ||   |||||
seq2  CCCGTAGTC-TTTCCTCT-TTACT-ATCTCC--TGCTCT-TG--ATGCAT  42

seq1  CTTGGTTATCATTTACTTAATAACTAATATTTACATATAACTGCATACAT  100
      ||  | ||||| |||| ||| |||||||| |||||||| |||||||||||
seq2  CT--GGTATCA-TTAC-TAAAAACTAATA-TTACATAT-ACTGCATACAT  86

seq1  ATCATATTTGTCTTTCTGGCTATGCATCACCTCCTTCAGGATATTTTTTT  150
      |||||| |||||||||||||||||||||||   |||||||||| ||||||
seq2  ATCATA-TTGTCTTTCTGGCTATGCATCAC--TCTTCAGGATA-TTTTTT  132

seq1  CTAGTCCTACCAATTTCCTTGCAAATTTTGCAATATAATTTTTACAGCTG  200
      |||||||||||||||| |||||||| |||||||||||| |||||||||||
seq2  CTAGTCCTACCAATTT-CTTGCAAA-TTTGCAATATAA-TTTTACAGCTG  179

seq1  AGAAATACTCCATTGCATATGTGTACCATATTTCC-TTATTCTTTTTTTC  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAAATACTCCATTGCATATGTGTACCATATTTCCTTTATTCTTTTTTTC  229

seq1  TTTTGAGGGAAATTTAGTTTTATTCCAGTTTCTGGCTATTATGAATCAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGGAAATTTAGTTTTATTCCAGTTTCTGGCTATTATGAATCAAT  279

seq1  GACATGATTATTAAGCAAGAGTTCTTGTGGTAGGATAAAGTGTTCTTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGATTATTAAGCAAGAGTTCTTGTGGTAGGATAAAGTGTTCTTTAG  329

seq1  GTATGTACACAGGAGTGTATATTTTGAGGTAGATTATTCCCATCATTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACACAGGAGTGTATATTTTGAGGTAGATTATTCCCATCATTCTA  379

seq1  AAGAACTGACGCACTGATATCAATAGTTGCTATTTTGTTAATCCAAATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGACGCACTGATATCAATAGTTGCTATTTTGTTAATCCAAATAG  429

seq1  CTCTCCAGAGTTCTTTTTGTTTCATTGTATTCCATCTCAATGAAAGTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGAGTTCTTTTTGTTTCATTGTATTCCATCTCAATGAAAGTGTC  479

seq1  CCATTGTATATTATCTGTTTCAGTATGTAACTAGTTAATAATGCTTATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATATTATCTGTTTCAGTATGTAACTAGTTAATAATGCTTATAT  529

seq1  ATTATTTATACATTCATATGCATATATAAATATGATTATTTGCTACATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATACATTCATATGCATATATAAATATGATTATTTGCTACATAC  579

seq1  TTCACTAGTTACTAGGACATCATGATTCTGAAGAACTCTGCTAGTAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAGTTACTAGGACATCATGATTCTGAAGAACTCTGCTAGTAATAA  629

seq1  CTCTTTATTGATAAAATATATACATATGGAAGATTATATGTTGTGAGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTGATAAAATATATACATATGGAAGATTATATGTTGTGAGATA  679

seq1  GTTTGGAGTAAAGCATTCCTTATGCTTGATTTTTAAATTTATTTCCAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGTAAAGCATTCCTTATGCTTGATTTTTAAATTTATTTCCAAAT  729

seq1  ATTTTAAATTATAAAATATACTAAAAGCCTAATAGGCTCCTTTTTGCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTATAAAATATACTAAAAGCCTAATAGGCTCCTTTTTGCAAG  779

seq1  CATAACAGAGTATCATTAATAGTGTCAGGAATTGGTGCCTGCCATTGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGAGTATCATTAATAGTGTCAGGAATTGGTGCCTGCCATTGGAT  829

seq1  GGGTTTCAAGTTGGATCAGTTATTGGTTAGCTATTCCCTTGGCCTTTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCAAGTTGGATCAGTTATTGGTTAGCTATTCCCTTGGCCTTTGCT  879

seq1  GCATCTTTGCCCTTGCATTTCTGTAGACAGGAAAAATATTAGGTCAGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTGCCCTTGCATTTCTGTAGACAGGAAAAATATTAGGTCAGAAG  929

seq1  TTTGGTGGGTGGATTGGATTTACTTACCCCTCTACAGGCAGTTCATGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGGTGGATTGGATTTACTTACCCCTCTACAGGCAGTTCATGCCT  979

seq1  GGATATAGGAGGTGGCTTTTACAGGTTCCATATCCTCACTGATATGAGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGGAGGTGGCTTTTACAGGTTCCATATCCTCACTGATATGAGTC  1029

seq1  TCAGCTAAGGTCACCACTCCATGACTTCTGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  TCAGCTAAGGTCACCACTCCATGACTTCTGAATTC  1064