BAC Information

Click to search

BAC

Clone NameB6Ng01-084D04
Chromosome12 (Build37)
Map Location 108,283,482 - 108,425,673
singlet/doubletdoublet
Overlap geneLOC100040484
Upstream geneVrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604
Downstream geneLOC382635, LOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084D04.bB6Ng01-084D04.g
ACCDH898231DH898232
length1,1871,102
definitionDH898231|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D04, 5' end.DH898232|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,424,475 - 108,425,673)(108,283,482 - 108,284,598)
sequence
gaattcattgtttttacatactatagaacaggacaacttaataagaagaa
tgattgtacagctctcggattcagaaggatcagtcccacatagtggtgat
ggtgtggtagaccacagacattcattcatgttgtcgtgggcaccctcctg
gcctcctctttctccacttcattcttctgggaccttcattccacaggtgt
gggatcacaaatcttcagagaccatgcccaccactctacccccattaatc
tttctggaagattcctcactgaatctgtcactcactctgaagtctgtcag
tctccgtgatgattctaaatcatgaagctgacaaacattagacattttat
acacacacctataatttgttatgtagcatatatactatgtgtacataaaa
tacattcatgtgcttatatttttgtaggaataggtctcaccatgtagccc
tggctgtcctagaactcaccatggagactatgttctggccttgaattcat
ggagctcttcctgctctgcctctcgactgccgggattaaaggtgtgctac
catgcctagctttcttcaaaaacatattctgcattctctggcatatgtga
aatacatatgtaatgctatatataatttgttcagttaattggtaacatat
tttagaaaaggctaattatggtaaaacataatgaaatttactgtattaac
tatttttaataatatagtccagccgtgttaagtgttaacttgtttttaat
tccctagaaaaattttcttctgctccaaacgttttcctttaacgcatctt
gcttgttttcagtggaggcaatgtcttcttttatctctgcttacataacg
accttctgttccctgcattgtctcctcttccagtctggcttagaacatac
tctccatgccttacttagatacccagaattcttttctactcttcacaagc
agcgtggtgccaaagcctgtggagactgtgttgggcaggcagtttgtcag
cagaagagatactgtgcttaaggcacaacaccaatagggcctttgtcact
ctctgatgcccatcttctgacatggcttcgtgccatgctaagggagtgac
tgagccggtgatggggagacctcaccctgtgtcagagaagctcgctgaat
cttctgcaattgcttggcgaagtcgttctatatggaa
gaattccctaatgtgctttaaatcaggcctgaaagatcacttggttgtct
ctctatcttggtaatggggagaccctagctactggaattctgcataataa
aacgctctgcatttgcagactatatgagtctggggtgtctttcttcctcg
aaacacagagccttacagtccttgtaaggatgcaaggggagaggaggcct
gcttcactgtggcagtgcaaactgttacagccatgacttgcctgctgtga
tgagctgcacactcatgcactggagcttagacaacccttcctgtagtgcc
tcatgtctggtatttttgctacagcaagaagacaggtagctaacacagca
ttggatctgataggatcttactctgaaaacatcacctggtaatttagagc
ttttacagaaggcaatctatgacactcggtttttatttccttaattattt
attcatttgttaaatgttttagtgaaaagtaatgtgctgaatattttatt
taaaaactagaatattatggctaaggggaaagatgaatgatacaggaggt
atccatatttaactaatttgtgtctctaggtggtttcagaactttctgga
agcccaggaaaactggaggcataatgagccatgaaatagttcttgtccaa
attgttgggtcagtatcctagagtaagctaatatgtggcttgtagctttt
acacagtaagttttcacagagttttaactgatgttatttttggtttagtt
tggtttggttctttctttttatattttgttttgttttgagacagggtctc
attatataactcaactgtcctggaactctctgtgtagaccaggctgaatt
caaactcacagagattctccttccttttcttctgagttctgggattaaag
tcatgtgtcacataccaagttatactatatatacatgtgtagaatgtgat
aagtgtgttaaacctcacagtatagctagtttatgtctgtaatttcacac
atatgaacaggcacactatttacatgagtatagattttgaggtagactga
cagtcgaaggggaagataaataattgggagtgttcaatgtgaaaagaacc
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108424475_108425673
seq2: B6Ng01-084D04.b_47_1233 (reverse)

seq1  TTCCATAT-GGACGAC-TCGCC-AGCAAATGCAGAAAGATTCAGCGAGCA  47
      |||||||| | ||||| ||||| ||||| ||||| |||||||||||||| 
seq2  TTCCATATAGAACGACTTCGCCAAGCAATTGCAG-AAGATTCAGCGAGCT  49

seq1  TCTCCTGACCACAGGGTGAGGTCTCCACATCACGCGGCCTCAGTTCACTC  97
      ||| |||| ||||||||||||||||| |||||| ||| ||||| ||||||
seq2  TCT-CTGA-CACAGGGTGAGGTCTCCCCATCAC-CGG-CTCAG-TCACTC  94

seq1  CC-TAGCATTGGCACGGAAGCCATGTCAGGAAGATGGGCATCAGAGAGTG  146
      || ||||| |||||| |||||||||||| |||||||||||||||||||||
seq2  CCTTAGCA-TGGCAC-GAAGCCATGTCA-GAAGATGGGCATCAGAGAGTG  141

seq1  ACCAAAGGCCCTATTGGTGTTGTGGCCTTAAGCACAGTTATCTCTTTCTG  196
      | ||||||||||||||||||||| ||||||||||||| |||||| |||||
seq2  A-CAAAGGCCCTATTGGTGTTGT-GCCTTAAGCACAG-TATCTC-TTCTG  187

seq1  CCTGACAAACCTGCCTGCCCAACACAGTCTCCACAGGCTTTGGCACCACG  246
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -CTGACAAA-CTGCCTGCCCAACACAGTCTCCACAGGCTTTGGCACCACG  235

seq1  CTGCCTTGTGAAGGGTAGAAAAGAATTCTGGGTATCTAAGTAAGGCATGG  296
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTG-CTTGTGAAGAGTAGAAAAGAATTCTGGGTATCTAAGTAAGGCATGG  284

seq1  AGAGTATGTTCTAAGCCAGACTGGAAGAGGAGACAATGCAGGGAACAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGTTCTAAGCCAGACTGGAAGAGGAGACAATGCAGGGAACAGAA  334

seq1  GGTCGTTATGTAAGCAGAGATAAAAGAAGACATTGCCTCCACTGAAAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTTATGTAAGCAGAGATAAAAGAAGACATTGCCTCCACTGAAAACA  384

seq1  AGCAAGATGCGTTAAAGGAAAACGTTTGGAGCAGAAGAAAATTTTTCTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATGCGTTAAAGGAAAACGTTTGGAGCAGAAGAAAATTTTTCTAG  434

seq1  GGAATTAAAAACAAGTTAACACTTAACACGGCTGGACTATATTATTAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAAAACAAGTTAACACTTAACACGGCTGGACTATATTATTAAAA  484

seq1  ATAGTTAATACAGTAAATTTCATTATGTTTTACCATAATTAGCCTTTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAATACAGTAAATTTCATTATGTTTTACCATAATTAGCCTTTTCT  534

seq1  AAAATATGTTACCAATTAACTGAACAAATTATATATAGCATTACATATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTTACCAATTAACTGAACAAATTATATATAGCATTACATATGT  584

seq1  ATTTCACATATGCCAGAGAATGCAGAATATGTTTTTGAAGAAAGCTAGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACATATGCCAGAGAATGCAGAATATGTTTTTGAAGAAAGCTAGGC  634

seq1  ATGGTAGCACACCTTTAATCCCGGCAGTCGAGAGGCAGAGCAGGAAGAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCACACCTTTAATCCCGGCAGTCGAGAGGCAGAGCAGGAAGAGC  684

seq1  TCCATGAATTCAAGGCCAGAACATAGTCTCCATGGTGAGTTCTAGGACAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAATTCAAGGCCAGAACATAGTCTCCATGGTGAGTTCTAGGACAG  734

seq1  CCAGGGCTACATGGTGAGACCTATTCCTACAAAAATATAAGCACATGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACATGGTGAGACCTATTCCTACAAAAATATAAGCACATGAAT  784

seq1  GTATTTTATGTACACATAGTATATATGCTACATAACAAATTATAGGTGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATGTACACATAGTATATATGCTACATAACAAATTATAGGTGTG  834

seq1  TGTATAAAATGTCTAATGTTTGTCAGCTTCATGATTTAGAATCATCACGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAATGTCTAATGTTTGTCAGCTTCATGATTTAGAATCATCACGG  884

seq1  AGACTGACAGACTTCAGAGTGAGTGACAGATTCAGTGAGGAATCTTCCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACAGACTTCAGAGTGAGTGACAGATTCAGTGAGGAATCTTCCAG  934

seq1  AAAGATTAATGGGGGTAGAGTGGTGGGCATGGTCTCTGAAGATTTGTGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTAATGGGGGTAGAGTGGTGGGCATGGTCTCTGAAGATTTGTGAT  984

seq1  CCCACACCTGTGGAATGAAGGTCCCAGAAGAATGAAGTGGAGAAAGAGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCTGTGGAATGAAGGTCCCAGAAGAATGAAGTGGAGAAAGAGGA  1034

seq1  GGCCAGGAGGGTGCCCACGACAACATGAATGAATGTCTGTGGTCTACCAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAGGGTGCCCACGACAACATGAATGAATGTCTGTGGTCTACCAC  1084

seq1  ACCATCACCACTATGTGGGACTGATCCTTCTGAATCCGAGAGCTGTACAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACCACTATGTGGGACTGATCCTTCTGAATCCGAGAGCTGTACAA  1134

seq1  TCATTCTTCTTATTAAGTTGTCCTGTTCTATAGTATGTAAAAACAATGAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCTTATTAAGTTGTCCTGTTCTATAGTATGTAAAAACAATGAA  1184

seq1  TTC  1199
      |||
seq2  TTC  1187

seq1: chr12_108283482_108284598
seq2: B6Ng01-084D04.g_67_1168

seq1  GAATTCCCTAATGTGCTTTAAATCAGGCCTGAAAGATCACTTGGTTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAATGTGCTTTAAATCAGGCCTGAAAGATCACTTGGTTGTCT  50

seq1  CTCTATCTTGGTAATGGGGAGACCCTAGCTACTGGAATTCTGCATAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTTGGTAATGGGGAGACCCTAGCTACTGGAATTCTGCATAATAA  100

seq1  AACGCTCTGCATTTGCAGACTATATGAGTCTGGGGTGTCTTTCTTCCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTCTGCATTTGCAGACTATATGAGTCTGGGGTGTCTTTCTTCCTCG  150

seq1  AAACACAGAGCCTTACAGTCCTTGTAAGGATGCAAGGGGAGAGGAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAGCCTTACAGTCCTTGTAAGGATGCAAGGGGAGAGGAGGCCT  200

seq1  GCTTCACTGTGGCAGTGCAAACTGTTACAGCCATGACTTGCCTGCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTGTGGCAGTGCAAACTGTTACAGCCATGACTTGCCTGCTGTGA  250

seq1  TGAGCTGCACACTCATGCACTGGAGCTTAGACAACCCTTCCTGTAGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCACACTCATGCACTGGAGCTTAGACAACCCTTCCTGTAGTGCC  300

seq1  TCATGTCTGGTATTTTTGCTACAGCAAGAAGACAGGTAGCTAACACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTGGTATTTTTGCTACAGCAAGAAGACAGGTAGCTAACACAGCA  350

seq1  TTGGATCTGATAGGATCTTACTCTGAAAACATCACCTGGTAATTTAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTGATAGGATCTTACTCTGAAAACATCACCTGGTAATTTAGAGC  400

seq1  TTTTACAGAAGGCAATCTATGACACTCGGTTTTTATTTCCTTAATTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAAGGCAATCTATGACACTCGGTTTTTATTTCCTTAATTATTT  450

seq1  ATTCATTTGTTAAATGTTTTAGTGAAAAGTAATGTGCTGAATATTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGTTAAATGTTTTAGTGAAAAGTAATGTGCTGAATATTTTATT  500

seq1  TAAAAACTAGAATATTATGGCTAAGGGGAAAGATGAATGATACAGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTAGAATATTATGGCTAAGGGGAAAGATGAATGATACAGGAGGT  550

seq1  ATCCATATTTAACTAATTTGTGTCTCTAGGTGGTTTCAGAACTTTCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATTTAACTAATTTGTGTCTCTAGGTGGTTTCAGAACTTTCTGGA  600

seq1  AGCCCAGGAAAACTGGAGGCATAATGAGCCATGAAATAGTTCTTGTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAAAACTGGAGGCATAATGAGCCATGAAATAGTTCTTGTCCAA  650

seq1  ATTGTTGGGTCAGTATCCTAGAGTAAGCTAATATGTGGCTTGTAGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGGTCAGTATCCTAGAGTAAGCTAATATGTGGCTTGTAGCTTTT  700

seq1  ACACAGTAAGTTTTCACAGAGTTTTAACTGATGTTATTTTTGGTTTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAAGTTTTCACAGAGTTTTAACTGATGTTATTTTTGGTTTAGTT  750

seq1  TGGTTTGGTTCTTTCTTTTTATATTTTGTTTTGTTTTGAGACAGGGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTTCTTTCTTTTTATATTTTGTTTTGTTTTGAGACAGGGTCTC  800

seq1  ATTATATAACTCAACTGTCCTGGAACTCTCTGTGTAGACCAGGCTGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAACTCAACTGTCCTGGAACTCTCTGTGTAGACCAGGCTGAATT  850

seq1  CAAACTCACAGAGATTCTCCTTCCTTTTCCTCCTGAGTTCTGGGATTAAA  900
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  CAAACTCACAGAGATTCTCCTTCCTTTT-CTTCTGAGTTCTGGGATTAAA  899

seq1  GTCATGTGTCACCATACCAAGTTATACTATATATACATGTGTAGAATGTG  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGTCA-CATACCAAGTTATACTATATATACATGTGTAGAATGTG  948

seq1  ATAAAGTTGTGTTAAACCTCACCAGTATTAGCTAGTTTATGTCTGTATAT  1000
      ||||   |||||||||||||| ||||| |||||||||||||||||||  |
seq2  ATAA--GTGTGTTAAACCTCA-CAGTA-TAGCTAGTTTATGTCTGTAATT  994

seq1  GCACACATATGAACAGGCACACATATAACATGAGTATAGATTTTGAGGGT  1050
       |||||||||||||||||||||   | ||||||||||||||||||| |||
seq2  TCACACATATGAACAGGCACACTATTTACATGAGTATAGATTTTGA-GGT  1043

seq1  AGACCTGACCAGTCAGAAGGGGGAAGGATAAGATAA-TGGGAGTGTTCAT  1099
      ||| |||| ||||| |||||||  | ||||| |||| |||||||||||| 
seq2  AGA-CTGA-CAGTC-GAAGGGG--AAGATAA-ATAATTGGGAGTGTTCA-  1086

seq1  ATGTGAATAAAGAACCAT  1117
      ||||||  ||||||||||
seq2  ATGTGA--AAAGAACCAT  1102