BAC Information

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BAC

Clone NameB6Ng01-084G22
Chromosome12 (Build37)
Map Location 109,979,720 - 110,114,311
singlet/doubletdoublet
Overlap geneYy1, Slc25a29, AI132487, Wars
Upstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164
Downstream geneWdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084G22.bB6Ng01-084G22.g
ACCDH898392DH898393
length1,2031,159
definitionDH898392|Mus musculus domesticus DNA, BAC clone: B6Ng01-084G22, 5' end.DH898393|Mus musculus domesticus DNA, BAC clone: B6Ng01-084G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,113,106 - 110,114,311)(109,979,720 - 109,980,889)
sequence
gaattcagagatcacctgcttctgcctcctgagccctgggattaaaggca
tgggttgtcacatgtggcccagattttattattattcctattgttaggaa
gttatcatgcctaacttgcatgttttggcttccaaaaacagttcacagag
ccatcccagagttagttgtatccttgtatttccctcccgtggagatgaag
ctgtggtcatcgtctgtggcattcacctccccacacctttcactgccaac
ggggcttcagtgctttgggacttttgccagataatcagttgggttttttt
ctctcttttcctttagagatatgaatcaaattctggatgcctatgaaaat
aagaagccattctacctgtacacaggcaggggcccctcctccgaagcaat
gcatctgggtcatctcgtcccgtttattttcacaaagtaagattgctcat
gtgacttggcctagtgaagcagcagtgacaacatcttagaagctaggact
gcagctgttggctgagctgccaggactaggaccgtgctatctgtggtctc
tgttcactgggtttgtgcctgggctcactctggaagagccagctacgttg
ggggatcacaccaccatgtaatcaactaaacctactccactcttcttcct
gctccttgtccttgccacagtaggcccactgtagtccaaacctgatgttt
tggcattcacatacaaagtggcattcttcctggggtctccgtcctcagtg
tccccggattggctgcagggcatttccagcacgcagtcactcgtgtgttt
tgcatgtggctacaggatgtgttcaatgtgcctttggtcatccagatgtc
tgacgacgagaagtacctgtggaaaggacttgactctggagcaggcatat
agctacaccgtagaaaatgcaaaaggacatcatttgcctgtggcttcgac
atcaacaaaactttcatcttctctgatcttgagtatatggggtaaggtga
acgtttagctgcctctggagcagtgggtgcagacctcattaccaacctga
aatgctggacatgggtatggcctggttcctttctgtattgatctgggagt
cttggttttatttagcagtatatttggaagatgaaagctgtgtatgtgtc
tgaagaaattagttatgtcagaaaagttactgtacctcttacctatctac
caa
gaattctggaattgagacacacagggagaattgccctgacacagagaaag
atggttgcatgacactgaggaccagggagccagccactggcatgactttg
actgcattaaatgtgataattgagttatgagctatgggagatgagccaaa
gctattagtcttggcatttagaagtctcagagtcattattttgtgaagct
taatgtgtgggatgggaagcctgagggttacagtgtagagcaccaggcaa
ctttggaacatcaggataagacatgatttatatacgttcatcactctcat
ttgtcaggtttagaccaaacttcactcgtatcagcaaatgagatttatgg
ctaggcaggtgtggccactcctgtttgtcctgacatttgggcaaataggg
cctgctgttatatacctgactggaatgcagccctgtatgacaaaattaat
acggcagttagagttcagggtaaatttgagtttcaaaataaaactagagc
cagatgcaggtggtgcgtgccctttgggatcctagcactcgggaagcggg
ggatctctgagttcaaggccagcctggtctacagaatgagttctcagaca
gccagggccacacagataaaccctgtcttaaataaaataaaactaaatta
aatttttaaaaaaaagagtaaattctaaagactgtaaacaaaatctcttc
atagtacttgccaatagtcccagggcttgggaggcaggggcagaaggtct
ctgtaattcaaggttaacctggtctacacagcgagatcctgtctttaaca
acaaatgactagctgttgatgttatttagtcaccttcaagtttctccttt
gtagctctccagactctgtacttgtgctgtccaaagatgatagatgactc
cctctgcctccccgcacccccaaagtgtctccagacacaacagaacagac
acacacacatacacacaaactcagaggtcacggtagtgtgcacagtgcac
atgctgtggagggaccaagaagctattgcaatgaaccttctagcaaaacg
aaatcaattttctccatggagtctcgctgaagtgtcctataggcatttca
gcagtcatgcccagagtaaattgaacaacaaaaacctaatttgtggaact
ttgatttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_110113106_110114311
seq2: B6Ng01-084G22.b_44_1246 (reverse)

seq1  TTGGTAGATAGGTTAAGAAGGTAACAGTA--CTTTCTGACATTACTTAAT  48
      |||||||||||| |||| |||| ||||||   |||||||||| ||| |  
seq2  TTGGTAGATAGG-TAAG-AGGT-ACAGTAACTTTTCTGACATAACTAA--  45

seq1  TCTTTCTATGCACACATACACAGCTTTCTACTTCCCAAATTACTGCTAAA  98
        |||||    |||||||||||||||||  ||||| ||  ||||||||||
seq2  --TTTCTTCAGACACATACACAGCTTTCATCTTCCAAATATACTGCTAAA  93

seq1  TAAAACCAAGACT-CCAGATCATAACAGAAGAGAAACCAGGCCATACCCA  147
      ||||||||||||| ||||||||  |||||| || ||||||||||||||||
seq2  TAAAACCAAGACTCCCAGATCAATACAGAA-AGGAACCAGGCCATACCCA  142

seq1  TGTCAAGCATTTCAGGTTGGTAATGAGGTCTGCACCCACTTGCTCAGAAG  197
      |||| |||||||||||||||||||||||||||||||||| |||||   ||
seq2  TGTCCAGCATTTCAGGTTGGTAATGAGGTCTGCACCCAC-TGCTCCAGAG  191

seq1  GCAGCTAAACGTTCACCTTACCCCATATACTCAAGATCAGAGAAGATGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAAACGTTCACCTTACCCCATATACTCAAGATCAGAGAAGATGAA  241

seq1  AGTTTTGTTGATGTCGAAGCCACAGGC-AATGATGTCC-TTTGCATTTTC  295
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  AGTTTTGTTGATGTCGAAGCCACAGGCAAATGATGTCCTTTTGCATTTTC  291

seq1  TACGGTGTAGCTATATGCCTGCTCCAGAGTCAAGTCC-TTCCACAGGTAC  344
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACGGTGTAGCTATATGCCTGCTCCAGAGTCAAGTCCTTTCCACAGGTAC  341

seq1  TTCTCGTCGTCAGACATCTGGATGACCAAAGGCACATTGAACACATCCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTCGTCAGACATCTGGATGACCAAAGGCACATTGAACACATCCTG  391

seq1  TAGCCACCTGCAAAACACACGAGTGACTGCCTGCTGGAAATGCCCTGCAG  444
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TAGCCACATGCAAAACACACGAGTGACTGCGTGCTGGAAATGCCCTGCAG  441

seq1  CCAATCCGGGGACACTGAGGACGGAGACCCCAGGAAGAATGCCACTTTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCGGGGACACTGAGGACGGAGACCCCAGGAAGAATGCCACTTTGT  491

seq1  ATGTGAATGCCAAAACATCAGGTTTGGACTACAGTGGGCCTACTGTGGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATGCCAAAACATCAGGTTTGGACTACAGTGGGCCTACTGTGGCA  541

seq1  AGGACAAGGAGCAGGAAGAAGAGTGGAGTAGGTTTAGTTGATTACATGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGGAGCAGGAAGAAGAGTGGAGTAGGTTTAGTTGATTACATGGT  591

seq1  GGTGTGATCCCCCAACGTAGCTGGCTCTTCCAGAGTGAGCCCAGGCACAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATCCCCCAACGTAGCTGGCTCTTCCAGAGTGAGCCCAGGCACAA  641

seq1  ACCCAGTGAACAGAGACCACAGATAGCACGGTCCTAGTCCTGGCAGCTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGAACAGAGACCACAGATAGCACGGTCCTAGTCCTGGCAGCTCA  691

seq1  GCCAACAGCTGCAGTCCTAGCTTCTAAGATGTTGTCACTGCTGCTTCACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGCTGCAGTCCTAGCTTCTAAGATGTTGTCACTGCTGCTTCACT  741

seq1  AGGCCAAGTCACATGAGCAATCTTACTTTGTGAAAATAAACGGGACGAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGTCACATGAGCAATCTTACTTTGTGAAAATAAACGGGACGAGA  791

seq1  TGACCCAGATGCATTGCTTCGGAGGAGGGGCCCCTGCCTGTGTACAGGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGATGCATTGCTTCGGAGGAGGGGCCCCTGCCTGTGTACAGGTA  841

seq1  GAATGGCTTCTTATTTTCATAGGCATCCAGAATTTGATTCATATCTCTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTCTTATTTTCATAGGCATCCAGAATTTGATTCATATCTCTAA  891

seq1  AGGAAAAGAGAGAAAAAAACCCAACTGATTATCTGGCAAAAGTCCCAAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAGAGAAAAAAACCCAACTGATTATCTGGCAAAAGTCCCAAAG  941

seq1  CACTGAAGCCCCGTTGGCAGTGAAAGGTGTGGGGAGGTGAATGCCACAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGCCCCGTTGGCAGTGAAAGGTGTGGGGAGGTGAATGCCACAGA  991

seq1  CGATGACCACAGCTTCATCTCCACGGGAGGGAAATACAAGGATACAACTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGACCACAGCTTCATCTCCACGGGAGGGAAATACAAGGATACAACTA  1041

seq1  ACTCTGGGATGGCTCTGTGAACTGTTTTTGGAAGCCAAAACATGCAAGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGATGGCTCTGTGAACTGTTTTTGGAAGCCAAAACATGCAAGTT  1091

seq1  AGGCATGATAACTTCCTAACAATAGGAATAATAATAAAATCTGGGCCACA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGATAACTTCCTAACAATAGGAATAATAATAAAATCTGGGCCACA  1141

seq1  TGTGACAACCCATGCCTTTAATCCCAGGGCTCAGGAGGCAGAAGCAGGTG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAACCCATGCCTTTAATCCCAGGGCTCAGGAGGCAGAAGCAGGTG  1191

seq1  ATCTCTGAATTC  1206
      ||||||||||||
seq2  ATCTCTGAATTC  1203

seq1: chr12_109979720_109980889
seq2: B6Ng01-084G22.g_68_1226

seq1  GAATTCTGGAATTGAGACACACAGGGAGAATTGCCCTGACACAGAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAATTGAGACACACAGGGAGAATTGCCCTGACACAGAGAAAG  50

seq1  ATGGTTGCATGACACTGAGGACCAGGGAGCCAGCCACTGGCATGACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGCATGACACTGAGGACCAGGGAGCCAGCCACTGGCATGACTTTG  100

seq1  ACTGCATTAAATGTGATAATTGAGTTATGAGCTATGGGAGATGAGCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTAAATGTGATAATTGAGTTATGAGCTATGGGAGATGAGCCAAA  150

seq1  GCTATTAGTCTTGGCATTTAGAAGTCTCAGAGTCATTATTTTGTGAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAGTCTTGGCATTTAGAAGTCTCAGAGTCATTATTTTGTGAAGCT  200

seq1  TAATGTGTGGGATGGGAAGCCTGAGGGTTACAGTGTAGAGCACCAGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTGGGATGGGAAGCCTGAGGGTTACAGTGTAGAGCACCAGGCAA  250

seq1  CTTTGGAACATCAGGATAAGACATGATTTATATACGTTCATCACTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAACATCAGGATAAGACATGATTTATATACGTTCATCACTCTCAT  300

seq1  TTGTCAGGTTTAGACCAAACTTCACTCGTATCAGCAAATGAGATTTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGTTTAGACCAAACTTCACTCGTATCAGCAAATGAGATTTATGG  350

seq1  CTAGGCAGGTGTGGCCACTCCTGTTTGTCCTGACATTTGGGCAAATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGGTGTGGCCACTCCTGTTTGTCCTGACATTTGGGCAAATAGGG  400

seq1  CCTGCTGTTATATACCTGACTGGAATGCAGCCCTGTATGACAAAATTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTTATATACCTGACTGGAATGCAGCCCTGTATGACAAAATTAAT  450

seq1  ACGGCAGTTAGAGTTCAGGGTAAATTTGAGTTTCAAAATAAAACTAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGTTAGAGTTCAGGGTAAATTTGAGTTTCAAAATAAAACTAGAGC  500

seq1  CAGATGCAGGTGGTGCGTGCCCTTTGGGATCCTAGCACTCGGGAAGCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAGGTGGTGCGTGCCCTTTGGGATCCTAGCACTCGGGAAGCGGG  550

seq1  GGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAATGAGTTCTCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAATGAGTTCTCAGACA  600

seq1  GCCAGGGCCACACAGATAAACCCTGTCTTAAATAAAATAAAACTAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCCACACAGATAAACCCTGTCTTAAATAAAATAAAACTAAATTA  650

seq1  AATTTTTAAAAAAAAGAGTAAATTCTAAAGACTGTAAACAAAATCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAAAAAAAGAGTAAATTCTAAAGACTGTAAACAAAATCTCTTC  700

seq1  ATAGTACTTGCCAATAGTCCCAGGGCTTGGGAGGCAGGGGCAGAAGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACTTGCCAATAGTCCCAGGGCTTGGGAGGCAGGGGCAGAAGGTCT  750

seq1  CTGTAATTCAAGGTTAACCTGGTCTACACAGCGAGATCCTGTCTTTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTCAAGGTTAACCTGGTCTACACAGCGAGATCCTGTCTTTAACA  800

seq1  ACAAATGACTAGCTGTTGATGTTATTTAGTCACCTTCAAGTTTCTCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGACTAGCTGTTGATGTTATTTAGTCACCTTCAAGTTTCTCCTTT  850

seq1  GTAGCTCTCCAGACTCTGTAC-TGGGCTGTCCAAAGATGATAGATGACTC  899
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  GTAGCTCTCCAGACTCTGTACTTGTGCTGTCCAAAGATGATAGATGACTC  900

seq1  CCTCTGCCTCCCCCGCACCCCCAAAGTGTCTTCCAGACACAACAGAACAG  949
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  CCTCTGCCT-CCCCGCACCCCCAAAGTGTC-TCCAGACACAACAGAACAG  948

seq1  ACACACACACATACACACAAACTCAGAGGTCACGGTAGTGTGCACAGTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATACACACAAACTCAGAGGTCACGGTAGTGTGCACAGTGC  998

seq1  ACAGGCTTGTGGAGGGACCAAGAAGCTATTTGCAATGGATACCCTCTAGC  1049
      ||| || ||||||||||||||||||||| ||||||||   ||| ||||||
seq2  ACATGC-TGTGGAGGGACCAAGAAGCTA-TTGCAATG--AACCTTCTAGC  1044

seq1  AAAACAGAAATCAATTTTCTCCAATGGAGTCTCGCTG-AGTGTCCTGATG  1098
      ||||| |||||||||||||||| |||||||||||||| ||||||||   |
seq2  AAAAC-GAAATCAATTTTCTCC-ATGGAGTCTCGCTGAAGTGTCCTATAG  1092

seq1  GCATTTCAGGGCAGGCCCATGCCCAGGAGT-AATTGACCAACATAAAACT  1147
      ||||||||  ||||   |||||||| |||| |||||| ||||| ||||| 
seq2  GCATTTCA--GCAG--TCATGCCCA-GAGTAAATTGAACAACA-AAAACC  1136

seq1  TATTTTGTGGACTTTTGATTTCT  1170
      || ||||||||  ||||||||||
seq2  TAATTTGTGGAACTTTGATTTCT  1159