BAC Information

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BAC

Clone NameB6Ng01-084K17
Chromosome12 (Build37)
Map Location 55,549,643 - 55,674,830
singlet/doubletdoublet
Overlap genenone
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256
Downstream geneLOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084K17.bB6Ng01-084K17.g
ACCDH898558DH898559
length1,2211,021
definitionDH898558|Mus musculus domesticus DNA, BAC clone: B6Ng01-084K17, 5' end.DH898559|Mus musculus domesticus DNA, BAC clone: B6Ng01-084K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,549,643 - 55,550,863)(55,673,807 - 55,674,830)
sequence
gaattcttcattcacaacctgacctgttgttcttcctctattcccatgga
ttttcttaatttgctctcacctctacagctccagagacagggctcaaggc
tctagtaaaaaggaaagaaaggaagaaagaaagaaagaaagaaagaaagg
aaggaaggaaggaaggaaggaagaaagaaagaaagaaagaaagaaagaaa
gagagaaagaaagagagagaggagaaatgaagaaatagagaaagaaaaga
aaagaagcacaaattcagatgaccacaggtccttgacaacactacagatg
ttgtagcttaaagtagtcacagccagtatcaaggtgtgaggggtgtttta
gaaaatatcaaggtgtctacaagcacaaataactgccagttaaacagcaa
agggaggcttgcagagactgttaagaagaaattcctacattccagaagca
aatccttacacatgcaaggcaatgatctttaaaattttaaacaagtctta
ataatagtctggcagtatctaccaccaaaatcttgaaaataatagtatcg
ttggatttgtaaattgaaattttaataatagcagcagcagcaacaacaac
aacaacagaaatccactgaacaccttccaggcacaagactgtaataggtg
gtaccgattcttctacccagcagcctccaaacccgggcttatttagttca
ggagttgaagtggagtaattgagttaatagatatgtgtagtaaatgtgcc
tgttagtcttaaggcatttctgagtttgtagaagactccacaaaagacca
aagtaaaaaaataaaaatacaaaatacaaaaggaagaggttcaaggttag
tcttattgctctgaggccagatcttgtcagcaccaatggaggccgtcatg
tctttaggttagcacttttagtgcagtcgaagtcatgaggagtgggacag
gtgcagatatcactaagaatatcataactcagaaagctaccttgaagctg
ctgttgagctgactggaaagaaacctgcagcagacccttagagaagatga
agccagagacccatttcactctacaccagtcttctccctcaagccattct
gttttggtgatgctcccagtataatcccctcagtccagggcgttacaatg
ttattctgcccagaagaaccacctgatccctcaggcctggaatacacagg
ggccactggtaaagcactccc
gaattcccttcagcagagtttcatccttcagccttttctctcttcctcca
gggactcagatttttattacttagaacattttggcctcagtacagattaa
tggccccaaattggcacacttgattcgcaaattctcacaaatcctaacaa
tcctgccacagcagaaataaatgatgataaaacctcttgcggctaagctt
gctctgttctacacgtcctcagcttcctgctcttcggcatctgtcagctc
taggatttctctgcacccctgctctcaaaaaaaaaaaaaagttcctaagt
gatttctaacttcactgggtatgatatatacatatatatatgtaatttaa
tttccagccgccacatcatggtggctcacaaccatctttaatatggacct
gattccctcttctggtgtgcaagaagacaaagcatttatttacataaaat
aagtaaataaataaatctgtaacaacacaacagaaagctgtaacaaaaat
tgtcttaaaccagatggtagtggcacacacctctagttccagcgctggga
aggcagaggcaggcagagctctaaggatgaggtcagcgtatgctacatag
ctagttccaggacattcaaggctacacaaagaaaccctgtcctgaaaaaa
aaattggcttaaaacttataacaaaggctttccttagttgtggagggaga
ttccacaatccttttcttcttattctgaagccagaaccatggagctgaag
ctgccaagttctgctgcttgctggggctggaacgtcgccccctcctttga
attttcacaagctttctgtttctgatgttttccttcactgcctcagtgag
aattaaaaattcttcaattcagccacaggcagagttttttggacaggcag
ccacattctttatcgaatattacaagaatagtcttgggccagcgtggtgg
tggtggcatcggtggccccacgcctttaattcagcactcatgaggtagag
gcaggaggatttctgatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55549643_55550863
seq2: B6Ng01-084K17.b_47_1267

seq1  GAATTCTTCATTCACAACCTGACCTGTTGTTCTTCCTCTATTCCCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTCACAACCTGACCTGTTGTTCTTCCTCTATTCCCATGGA  50

seq1  TTTTCTTAATTTGCTCTCACCTCTACAGCTCCAGAGACAGGGCTCAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAATTTGCTCTCACCTCTACAGCTCCAGAGACAGGGCTCAAGGC  100

seq1  TCTAGTAAAAAGGAAAGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAAAAAGGAAAGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGG  150

seq1  AAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200

seq1  GAGAGAAAGAAAGAGAGAGAGGAGAAATGAAGAAATAGAGAAAGAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGAAAGAGAGAGAGGAGAAATGAAGAAATAGAGAAAGAAAAGA  250

seq1  AAAGAAGCACAAATTCAGATGACCACAGGTCCTTGACAACACTACAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCACAAATTCAGATGACCACAGGTCCTTGACAACACTACAGATG  300

seq1  TTGTAGCTTAAAGTAGTCACAGCCAGTATCAAGGTGTGAGGGGTGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTTAAAGTAGTCACAGCCAGTATCAAGGTGTGAGGGGTGTTTTA  350

seq1  GAAAATATCAAGGTGTCTACAAGCACAAATAACTGCCAGTTAAACAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCAAGGTGTCTACAAGCACAAATAACTGCCAGTTAAACAGCAA  400

seq1  AGGGAGGCTTGCAGAGACTGTTAAGAAGAAATTCCTACATTCCAGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCTTGCAGAGACTGTTAAGAAGAAATTCCTACATTCCAGAAGCA  450

seq1  AATCCTTACACATGCAAGGCAATGATCTTTAAAATTTTAAACAAGTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTACACATGCAAGGCAATGATCTTTAAAATTTTAAACAAGTCTTA  500

seq1  ATAATAGTCTGGCAGTATCTACCACCAAAATCTTGAAAATAATAGTATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTCTGGCAGTATCTACCACCAAAATCTTGAAAATAATAGTATCG  550

seq1  TTGGATTTGTAAATTGAAATTTTAATAATAGCAGCAGCAGCAACAACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTGTAAATTGAAATTTTAATAATAGCAGCAGCAGCAACAACAAC  600

seq1  AACAACAGAAATCCACTGAACACCTTCCAGGCACAAGACTGTAATAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGAAATCCACTGAACACCTTCCAGGCACAAGACTGTAATAGGTG  650

seq1  GTACCGATTCTTCTACCCAGCAGCCTCCAAACCCGGGCTTATTTAGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGATTCTTCTACCCAGCAGCCTCCAAACCCGGGCTTATTTAGTTCA  700

seq1  GGAGTTGAAGTGGAGTAATTGAGTTAATAGATATGTGTAGTAAATGTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGAAGTGGAGTAATTGAGTTAATAGATATGTGTAGTAAATGTGCC  750

seq1  TGTTAGTCTTAAGGCATTTCTGAGTTTGTAGAAGACTCCACAAAAGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCTTAAGGCATTTCTGAGTTTGTAGAAGACTCCACAAAAGACCA  800

seq1  AAGTAAAAAAATAAAAATACAAAATACAAAAGGAAGAGGTTCAAGGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAAAATAAAAATACAAAATACAAAAGGAAGAGGTTCAAGGTTAG  850

seq1  TCTTATTGCTCTGAGGCCAGATCTTGTCAGCACCAATGGAGGCCGTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGCTCTGAGGCCAGATCTTGTCAGCACCAATGGAGGCCGTCATG  900

seq1  TCTTTAGGTTAGCACTTTTAGTGCAGTCGAAGTCATGAGGAGTGGGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGTTAGCACTTTTAGTGCAGTCGAAGTCATGAGGAGTGGGACAG  950

seq1  GTGCAGATATCACTAAGAATATCATAACTCAGAAAGCTACCTTGAAGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATATCACTAAGAATATCATAACTCAGAAAGCTACCTTGAAGCTG  1000

seq1  CTGTTGAAGCTGACTGGAAAGAAACCTGCAGCAGACCCTAAGAGAAGAAT  1050
      |||||| |||||||||||||||||||||||||||||||| ||||||| ||
seq2  CTGTTG-AGCTGACTGGAAAGAAACCTGCAGCAGACCCTTAGAGAAG-AT  1048

seq1  GAAGCCAGAAGAACCA-TTCACTCTTACAACCAGTC-TCTCCTCAAAGCC  1098
      |||||||| ||| ||| ||||||| ||| ||||||| |||||   |||||
seq2  GAAGCCAG-AGACCCATTTCACTC-TAC-ACCAGTCTTCTCCCTCAAGCC  1095

seq1  A-TCTGTTTGGTGGATGCTCCCCAGTATAAT-CTCTCAGTCCAGGGCCGT  1146
      | ||||||| |  |||||| ||||||||||| | |||||||||||||  |
seq2  ATTCTGTTTTGGTGATGCT-CCCAGTATAATCCCCTCAGTCCAGGGCGTT  1144

seq1  ACAATGTAAATACTG-CCAGGAGACCCA-CTGAT-CCTCAGG-CTGGAGA  1192
      |||||||  || ||| |||| ||| ||| ||||| ||||||| ||||| |
seq2  ACAATGT-TATTCTGCCCAGAAGAACCACCTGATCCCTCAGGCCTGGA-A  1192

seq1  TATCACAAGGGCCACTGGAAAAGCA-TCCC  1221
      || |||| |||||||||| |||||| ||||
seq2  TA-CACAGGGGCCACTGGTAAAGCACTCCC  1221

seq1: chr12_55673807_55674830
seq2: B6Ng01-084K17.g_70_1090 (reverse)

seq1  TCAAACTCAGAAATCCTCCTGCCTCTACCTCCTGAGTGCTGGAATTAAAG  50
      ||||| ||||||||||||||||||||||||| |||||||| |||||||||
seq2  TCAAA-TCAGAAATCCTCCTGCCTCTACCTCATGAGTGCT-GAATTAAAG  48

seq1  GCGT-GCGCCACCGATGCCACCACCACCACGCCTGGCCCAAGACTATTCT  99
      |||| | |||||||||||||||||||||||| ||||||||||||||||||
seq2  GCGTGGGGCCACCGATGCCACCACCACCACG-CTGGCCCAAGACTATTCT  97

seq1  TGTAATATTTCGATAAAGAATGTGGCTGCCTGTCCAAAAAACTCTGCCTG  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATA-TTCGATAAAGAATGTGGCTGCCTGTCCAAAAAACTCTGCCTG  146

seq1  TGGCTGAATTGAAGAATTTTTAATTCTCACTGAGGCAGTGAAGGAAAACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATTGAAGAATTTTTAATTCTCACTGAGGCAGTGAAGGAAAACA  196

seq1  TCAGAAACAGAAAGCTTGTGAAAATTCAAAGGAGGGGGCGACGTTCCAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAGAAAGCTTGTGAAAATTCAAAGGAGGGGGCGACGTTCCAGC  246

seq1  CCCAGCAAGCAGCAGAACTTGGCAGCTTCAGCTCCATGGTTCTGGCTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAAGCAGCAGAACTTGGCAGCTTCAGCTCCATGGTTCTGGCTTCA  296

seq1  GAATAAGAAGAAAAGGATTGTGGAATCTCCCTCCACAACTAAGGAAAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAAGAAAAGGATTGTGGAATCTCCCTCCACAACTAAGGAAAGCC  346

seq1  TTTGTTATAAGTTTTAAGCCAATTTTTTTTTCAGGACAGGGTTTCTTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATAAGTTTTAAGCCAATTTTTTTTTCAGGACAGGGTTTCTTTGT  396

seq1  GTAGCCTTGAATGTCCTGGAACTAGCTATGTAGCATACGCTGACCTCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTTGAATGTCCTGGAACTAGCTATGTAGCATACGCTGACCTCATC  446

seq1  CTTAGAGCTCTGCCTGCCTCTGCCTTCCCAGCGCTGGAACTAGAGGTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCTCTGCCTGCCTCTGCCTTCCCAGCGCTGGAACTAGAGGTGTG  496

seq1  TGCCACTACCATCTGGTTTAAGACAATTTTTGTTACAGCTTTCTGTTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTACCATCTGGTTTAAGACAATTTTTGTTACAGCTTTCTGTTGTG  546

seq1  TTGTTACAGATTTATTTATTTACTTATTTTATGTAAATAAATGCTTTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAGATTTATTTATTTACTTATTTTATGTAAATAAATGCTTTGTC  596

seq1  TTCTTGCACACCAGAAGAGGGAATCAGGTCCATATTAAAGATGGTTGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCACACCAGAAGAGGGAATCAGGTCCATATTAAAGATGGTTGTGA  646

seq1  GCCACCATGATGTGGCGGCTGGAAATTAAATTACATATATATATGTATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGATGTGGCGGCTGGAAATTAAATTACATATATATATGTATAT  696

seq1  ATCATACCCAGTGAAGTTAGAAATCACTTAGGAACTTTTTTTTTTTTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACCCAGTGAAGTTAGAAATCACTTAGGAACTTTTTTTTTTTTTTG  746

seq1  AGAGCAGGGGTGCAGAGAAATCCTAGAGCTGACAGATGCCGAAGAGCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGGGTGCAGAGAAATCCTAGAGCTGACAGATGCCGAAGAGCAGG  796

seq1  AAGCTGAGGACGTGTAGAACAGAGCAAGCTTAGCCGCAAGAGGTTTTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGGACGTGTAGAACAGAGCAAGCTTAGCCGCAAGAGGTTTTATC  846

seq1  ATCATTTATTTCTGCTGTGGCAGGATTGTTAGGATTTGTGAGAATTTGCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTATTTCTGCTGTGGCAGGATTGTTAGGATTTGTGAGAATTTGCG  896

seq1  AATCAAGTGTGCCAATTTGGGGCCATTAATCTGTACTGAGGCCAAAATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTGTGCCAATTTGGGGCCATTAATCTGTACTGAGGCCAAAATGT  946

seq1  TCTAAGTAATAAAAATCTGAGTCCCTGGAGGAAGAGAGAAAAGGCTGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTAATAAAAATCTGAGTCCCTGGAGGAAGAGAGAAAAGGCTGAAG  996

seq1  GATGAAACTCTGCTGGAGGGAATTC  1024
      ||||||||||||||| |||||||||
seq2  GATGAAACTCTGCTGAAGGGAATTC  1021