BAC Information

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BAC

Clone NameB6Ng01-089E11
Chromosome12 (Build37)
Map Location 33,687,248 - 33,872,284
singlet/doubletdoublet
Overlap geneLOC100043109, 1110049B09Rik, Atxn7l4
Upstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl
Downstream geneAtxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089E11.bB6Ng01-089E11.g
ACCDH901897DH901898
length9991,076
definitionDH901897|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E11, 5' end.DH901898|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,871,282 - 33,872,284)(33,687,248 - 33,688,324)
sequence
gaattctagaagacagggagactagagaagagaaaattacttaaaaaata
aaagaccattttccagaattggacaatttgcatttccaaattaaagggcc
caccagtggactgctcaaattcaaaagagaggcgttctccacagcacact
cttgggaaatttcagacccatatggataaagagaagatcctgagagcttg
caggagggaaaggatcacacagacccagcatctctatgacaaggaacaca
agagatgacagacaataccaaaaaggccttgagattctgaagacaaataa
tttccaattttacatactgttcagcccccaagagccttccatattttaag
tgctcaaacactatgtcttcaggatgtatgtggaagagaaatgccacgga
agaagatagtgaaggacttagaaagtaaggtaggccctcagtgggacact
tcacagcaggatgggaagggagggcccatgaaggcaggaccaaatcagcc
aaatgtaacactgagggatggatggtttgatagatctaatcagccgcaga
aaaatactgttggcctctgcccagtctgatgggcaaaatttggggtaagt
ctatagatatcaatgcaaataaagagcaagaggcgattattttaggataa
gcaaaaatatatgtaagaggaagtgccaaagacagcatcaagagacctgc
gtttctggtctatggaagcagcacaggtaactttgcaagtgttaaacctg
aaatcaagaaaacaagtaactttcgttgtacagtgtctctataactttct
gatttggatacctgctaattaccaaaagcttattgtgaaccacaaaccca
tagagaactgggagccagcactgggcaagagccaaggagtgggaagtggg
tggggctgggagtggaagccaaactttcccagctgtggctcaagtttctt
gattggctacctaccactatgaatgatgcagaaatgctctcacccttga
gaattcacttttttttttcctgtcttgagtagcttgtctctaccaaggct
gaagatttcattctcttgagtagaatgaaccagttttcccttaatgttct
gtcagacagacaagaagttgctctggttggaggctcggggttggttctag
tagacagcaacttcagggaaggagtcaggagagccagaatgggatgctca
gtatgggtgaccacaaagtcaggcgccccaggagcagagattccgtccat
tcctgtgaacagtggggacacgtctaataaaatgctaactccgggggccc
tggacaaagggaaagggcttggattgctagtctgccctatagcgtggaag
ctttgaggagagtgaaagcagctgctggctgggccagtgggcttggcatc
cgtgggccacacaaatgctggaggaagaggggcagcccaggctcggcgcc
ctgaggtctgtcccttagctggccagaaccacaggccccacccttcgatg
cctgatgatggaggtagagggagattcttgactgagtgaagagtccaccc
ttgactgagctaaatagcctcttcaacatgagcatgaatgtcaggctaaa
tcgataggtggagtagttaaagagatgctgcactttctatcccagaattc
cctcccatgtgtacagtccccagtgggaagctgtgaggtttggttggatc
tgtcgctattggcatgggaccctctgacctccaaggggttgagatgcagt
gacacacgggctcttccggtccaatgaacccaacctttgcagccagagtg
gcttgccaggccatcaaaatgctcatcatggctcttagtcaggctcccac
tggccttagagtgtgatgggggaaatgaagttgtgggttttcctggtcct
atatctctgagcttctccactccacaaacccagaacaatgagaagactgg
agcttcttcagtctctattccttcgagtaatagggctggacaagtacttg
ggaaggactgaatggcaagcttagcaatggagcttggtcaagacattgaa
ttgggcctccaacaaaccgagttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33871282_33872284
seq2: B6Ng01-089E11.b_45_1043 (reverse)

seq1  TCAAGGGTGAGGGCATTTCTGCATCAATTCATTAGTGGTAGGTAGCACAA  50
      ||||||||||| ||||||||||||| ||||| |||||||||||||| |||
seq2  TCAAGGGTGAGAGCATTTCTGCATC-ATTCA-TAGTGGTAGGTAGC-CAA  47

seq1  TCCAGAAACCTTGAGCCACAGCTGGGGAGGTTTGGCTTCCACTCCCAGCC  100
      || ||||| ||||||||||||||||| | |||||||||||||||||||||
seq2  TCAAGAAA-CTTGAGCCACAGCTGGGAAAGTTTGGCTTCCACTCCCAGCC  96

seq1  CCACCCACTTCCCACTCCTTGGCTCTTGCCCAGTGCTGGCTCCCAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTTCCCACTCCTTGGCTCTTGCCCAGTGCTGGCTCCCAGTTCT  146

seq1  CTATGGGTTTGTGGTTCACAATAAGCTTTTGGTAATTAGCAGGTATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGTTTGTGGTTCACAATAAGCTTTTGGTAATTAGCAGGTATCCAA  196

seq1  ATCAGAAAGTTATAGAGACACTGTACAACGAAAGTTACTTGTTTTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAGTTATAGAGACACTGTACAACGAAAGTTACTTGTTTTCTTGA  246

seq1  TTTCAGGTTTAACACTTGCAAAGTTACCTGTGCTGCTTCCATAGACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTTTAACACTTGCAAAGTTACCTGTGCTGCTTCCATAGACCAGA  296

seq1  AACGCAGGTCTCTTGATGCTGTCTTTGGCACTTCCTCTTACATATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGGTCTCTTGATGCTGTCTTTGGCACTTCCTCTTACATATATTTT  346

seq1  TGCTTATCCTAAAATAATCGCCTCTTGCTCTTTATTTGCATTGATATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATCCTAAAATAATCGCCTCTTGCTCTTTATTTGCATTGATATCTA  396

seq1  TAGACTTACCCCAAATTTTGCCCATCAGACTGGGCAGAGGCCAACAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTACCCCAAATTTTGCCCATCAGACTGGGCAGAGGCCAACAGTAT  446

seq1  TTTTCTGCGGCTGATTAGATCTATCAAACCATCCATCCCTCAGTGTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCGGCTGATTAGATCTATCAAACCATCCATCCCTCAGTGTTACA  496

seq1  TTTGGCTGATTTGGTCCTGCCTTCATGGGCCCTCCCTTCCCATCCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGATTTGGTCCTGCCTTCATGGGCCCTCCCTTCCCATCCTGCTG  546

seq1  TGAAGTGTCCCACTGAGGGCCTACCTTACTTTCTAAGTCCTTCACTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTCCCACTGAGGGCCTACCTTACTTTCTAAGTCCTTCACTATCT  596

seq1  TCTTCCGTGGCATTTCTCTTCCACATACATCCTGAAGACATAGTGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGTGGCATTTCTCTTCCACATACATCCTGAAGACATAGTGTTTGA  646

seq1  GCACTTAAAATATGGAAGGCTCTTGGGGGCTGAACAGTATGTAAAATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAAAATATGGAAGGCTCTTGGGGGCTGAACAGTATGTAAAATTGG  696

seq1  AAATTATTTGTCTTCAGAATCTCAAGGCCTTTTTGGTATTGTCTGTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTGTCTTCAGAATCTCAAGGCCTTTTTGGTATTGTCTGTCATC  746

seq1  TCTTGTGTTCCTTGTCATAGAGATGCTGGGTCTGTGTGATCCTTTCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTTCCTTGTCATAGAGATGCTGGGTCTGTGTGATCCTTTCCCTC  796

seq1  CTGCAAGCTCTCAGGATCTTCTCTTTATCCATATGGGTCTGAAATTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGCTCTCAGGATCTTCTCTTTATCCATATGGGTCTGAAATTTCCC  846

seq1  AAGAGTGTGCTGTGGAGAACGCCTCTCTTTTGAATTTGAGCAGTCCACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGCTGTGGAGAACGCCTCTCTTTTGAATTTGAGCAGTCCACTG  896

seq1  GTGGGCCCTTTAATTTGGAAATGCAAATTGTCCAATTCTGGAAAATGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCCTTTAATTTGGAAATGCAAATTGTCCAATTCTGGAAAATGGTC  946

seq1  TTTTATTTTTTAAGTAATTTTCTCTTCTCTAGTCTCCCTGTCTTCTAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTAAGTAATTTTCTCTTCTCTAGTCTCCCTGTCTTCTAGAA  996

seq1  TTC  1003
      |||
seq2  TTC  999

seq1: chr12_33687248_33688324
seq2: B6Ng01-089E11.g_68_1143

seq1  GAATTCACTTTTTTTTTTCCTGTCTTGAGTAGCTTGTCTCTACCAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTTTTTTTCCTGTCTTGAGTAGCTTGTCTCTACCAAGGCT  50

seq1  GAAGATTTCATTCTCTTGAGTAGAATGAACCAGTTTTCCCTTAATGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTCATTCTCTTGAGTAGAATGAACCAGTTTTCCCTTAATGTTCT  100

seq1  GTCAGACAGACAAGAAGTTGCTCTGGTTGGAGGCTCGGGGTTGGTTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACAGACAAGAAGTTGCTCTGGTTGGAGGCTCGGGGTTGGTTCTAG  150

seq1  TAGACAGCAACTTCAGGGAAGGAGTCAGGAGAGCCAGAATGGGATGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCAACTTCAGGGAAGGAGTCAGGAGAGCCAGAATGGGATGCTCA  200

seq1  GTATGGGTGACCACAAAGTCAGGCGCCCCAGGAGCAGAGATTCCGTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTGACCACAAAGTCAGGCGCCCCAGGAGCAGAGATTCCGTCCAT  250

seq1  TCCTGTGAACAGTGGGGACACGTCTAATAAAATGCTAACTCCGGGGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAACAGTGGGGACACGTCTAATAAAATGCTAACTCCGGGGGCCC  300

seq1  TGGACAAAGGGAAAGGGCTTGGATTGCTAGTCTGCCCTATAGCGTGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAGGGAAAGGGCTTGGATTGCTAGTCTGCCCTATAGCGTGGAAG  350

seq1  CTTTGAGGAGAGTGAAAGCAGCTGCTGGCTGGGCCAGTGGGCTTGGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGAGAGTGAAAGCAGCTGCTGGCTGGGCCAGTGGGCTTGGCATC  400

seq1  CGTGGGCCACACAAATGCTGGAGGAAGAGGGGCAGCCCAGGCTCGGCGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGCCACACAAATGCTGGAGGAAGAGGGGCAGCCCAGGCTCGGCGCC  450

seq1  CTGAGGTCTGTCCCTTAGCTGGCCAGAACCACAGGCCCCACCCTTCGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCTGTCCCTTAGCTGGCCAGAACCACAGGCCCCACCCTTCGATG  500

seq1  CCTGATGATGGAGGTAGAGGGAGATTCTTGACTGAGTGAAGAGTCCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATGGAGGTAGAGGGAGATTCTTGACTGAGTGAAGAGTCCACCC  550

seq1  TTGACTGAGCTAAATAGCCTCTTCAACATGAGCATGAATGTCAGGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGAGCTAAATAGCCTCTTCAACATGAGCATGAATGTCAGGCTAAA  600

seq1  TCGATAGGTGGAGTAGTTAAAGAGATGCTGCACTTTCTATCCCAGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAGGTGGAGTAGTTAAAGAGATGCTGCACTTTCTATCCCAGAATTC  650

seq1  CCTCCCATGAGTACAGTCCCCAGTGGGAAGCTGTGAGGTTTGGTTGGATC  700
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATGTGTACAGTCCCCAGTGGGAAGCTGTGAGGTTTGGTTGGATC  700

seq1  TGTCGCTATTGGCATGGGACCCTCTGACCTCCAAGGGGTTGAGATGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCTATTGGCATGGGACCCTCTGACCTCCAAGGGGTTGAGATGCAGT  750

seq1  GACACAC-GGCTCTTCCGGTCCAATGAACCCAACCTTTGCAGCCAGAGTG  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACGGGCTCTTCCGGTCCAATGAACCCAACCTTTGCAGCCAGAGTG  800

seq1  GC-TGCCAGGCCATCAAAATGCTCATCATGGCTCTTAGTCCAGGCTCCCC  848
      || |||||||||||||||||||||||||||||||||||| |||||| |||
seq2  GCTTGCCAGGCCATCAAAATGCTCATCATGGCTCTTAGT-CAGGCT-CCC  848

seq1  ACTGGCCTTAGAGTGTGAT-GGGGAAATGAAGTTGTGGGTTTTCCTGGTC  897
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGGCCTTAGAGTGTGATGGGGGAAATGAAGTTGTGGGTTTTCCTGGTC  898

seq1  CTATACTCTCTGAGCTTACTCCAACTCCACAAACCCAGAACCAATGAG-A  946
      ||||| ||||||||||| |||| ||||||||||||||||| ||||||| |
seq2  CTATA-TCTCTGAGCTT-CTCC-ACTCCACAAACCCAGAA-CAATGAGAA  944

seq1  GACT-GAGCTTC-TCAGTCTCTCATTCCTCCGAAGTATAGGGCTGGGACA  994
      |||| ||||||| ||||||||| |||||| |||   |||||||| |||||
seq2  GACTGGAGCTTCTTCAGTCTCT-ATTCCTTCGAGTAATAGGGCT-GGACA  992

seq1  TGTACTTGGGAAGTACTG-ATGGCAAGCTTAGCAAT-GAGCCTTGTCAAA  1042
       |||||||||||| |||| ||||||||||||||||| |||| | ||| ||
seq2  AGTACTTGGGAAGGACTGAATGGCAAGCTTAGCAATGGAGCTTGGTC-AA  1041

seq1  GACTATGATTTGGG-CTTCAACAAATCCGAGTTCCA  1077
      |||  ||| ||||| || ||||||| ||||||||||
seq2  GACATTGAATTGGGCCTCCAACAAA-CCGAGTTCCA  1076