BAC Information

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BAC

Clone NameB6Ng01-090I04
Chromosome3 (Build37)12 (Build37)
Map Location 71,665,116 - 71,665,66534,065,594 - 34,066,661
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385
Downstream geneLOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090I04.bB6Ng01-090I04.g
ACCDH902791DH902792
length9941,055
definitionDH902791|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I04, 5' end.DH902792|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,665,116 - 71,665,665)(34,065,594 - 34,066,661)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
acaaatgctttctccccatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggatttctgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcttttaccgagaattttattgagtatttttgc
atcgatattcataagggaaattggtctgaagttctctatcttagttggat
ctttctgtggttatggtataagagtaattgtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtggaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
atcctggacttcttttggctgggagactattaatgactgcttctatttct
ttaggggatatgggactatttagatcgttaacttgatcctgatttaactt
tggtacctggtatctgtctagaaatttgttcatttcgtccaggttttcca
gttttgttgagtatagccttttgtagtaggatctgatgatattttggatc
tcttcagaatcagttcttatgtctcctttttcatttctgattttgttaat
taggatactgtccctatgccctctagttagtctggcgaagggtttatcta
tcttgttgattttctcaaaggaccagctcctggtttggttgattctttga
atagttctttttgtttccatttggttgatttcagccctgagtttgatatt
tcctgccttctactcctcttgagtgaatttcttccttttttttctagagc
atttagatgtgtgtcaagctgctagtgtgtgctctctctagtttcctttg
gagacactcagagctatgagtttccctctataaatgctttcata
gaattcctgtctgatgctgtccgcattttcaggtaggcaagtgggatgtg
tgtgggagccggagagaagtgtgagaaaagagaagaatgacattgttgct
gaagaaactggattgacagcagtgtttgggagcacatttgcaaaagaccc
tgatgtgagaagatagccttgtgtaggggttgagtaaccaggtgcacaat
aagccacccagagccaaagctctctcaggcaaactaagacaaaatctctc
atcattttgccacaggcccagcccaccagatctctgagaggggccactcg
tgactgtactagcattgtgacttctcccttgtgcactgccacaaccagat
gtgcactgccacaaccaggtgtgcactgtcacaaccagatgtgcactgcc
acaaccagatgtgcactgccacaaccaggtgtgcactgccacaaccagat
gtgcactgccacaaccaggtgtgcactgtcacaaccagatgcgcactgcc
acaaccaggtgtgcactgccacaaccagatgtgcactgtcacaaccaggt
gtgtactgccacaaccagatgtgcactgccacaaccaggtgtgcactatc
acaaccagatgtgcactgccacaaccaggtgtgcactattataaccagat
ttgtgcagcactggggattgactccaggactttgcgcatgctaggcaaac
actctagaagcacacacctcccatttgtttgtttttgtttgtttatttac
aggtcagacgataacttgggggagttagttttttcctaacatgtgaattc
tggggatcaaattcaggccatcagacttggtggtgagtatggctacctca
tcttacaagctcagctaagggttgactcagaatggtcctgctgagcaaaa
aggaaactgaggcacacagttaaggaggaactatgagctggcagctggct
gctgacactcaaatatttcccttcagctcagtgtctccacactgcacttc
tagagaatcatctttactacgtgatcctcctacgcgtcctcctaagccgc
tctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71665116_71665665
seq2: B6Ng01-090I04.b_47_596 (reverse)

seq1  AAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCAAA  50
      ||||| ||||||||||||||| || ||||||| ||||||||||| || ||
seq2  AAGTTAAATCAGGATCAAGTTAACGATCTAAATAGTCCCATATCCCCTAA  50

seq1  AGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGAC  100
      ||||||||||||||| ||||||||||||||| |||||| ||| |||||| 
seq2  AGAAATAGAAGCAGTCATTAATAGTCTCCCAGCCAAAAGAAGTCCAGGAT  100

seq1  CAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATT  150

seq1  CCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACC  200
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGTACTCTACC  200

seq1  CAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG  250
      ||||||||||||||||||||| |||||||| |||||  ||||||||||||
seq2  CAACTCATTTTATGAAGCCACAATTACTCTTATACCATAACCACAGAAAG  250

seq1  ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGAT  300
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  ATCCAACTAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGAT  300

seq1  GCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAA  350
      |||||||| |||||||||||||||| |||  |||||||||||||||||||
seq2  GCAAAAATACTCAATAAAATTCTCGGTAAAAGAATCCAAGAACACATTAA  350

seq1  AGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGAT  400

seq1  GGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTC  450
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATATACAGAAATCCATCAATGTAATCCATTATATAAACAAACTC  450

seq1  AAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGA  500
      ||||||||||||||||||||||||||||||||||  || |||||||||| 
seq2  AAAGACAAAAACCACATGATCATCTCGTTAGATGGGGAGAAAGCATTTGT  500

seq1  CAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC  550

seq1: chr12_34065594_34066661
seq2: B6Ng01-090I04.g_67_1121

seq1  GAATTCCTGTCTGATGCTGTCCGCATTTTCAGGTAGGCAAGTGGGATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTGATGCTGTCCGCATTTTCAGGTAGGCAAGTGGGATGTG  50

seq1  TGTGGGAGCCGGAGAGAAGTGTGAGAAAAGAGAAGAATGACATTGTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGCCGGAGAGAAGTGTGAGAAAAGAGAAGAATGACATTGTTGCT  100

seq1  GAAGAAACTGGATTGACAGCAGTGTTTGGGAGCACATTTGCAAAAGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACTGGATTGACAGCAGTGTTTGGGAGCACATTTGCAAAAGACCC  150

seq1  TGATGTGAGAAGATAGCCTTGTGTAGGGGTTGAGTAACCAGGTGCACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGAGAAGATAGCCTTGTGTAGGGGTTGAGTAACCAGGTGCACAAT  200

seq1  AAGCCACCCAGAGCCAAAGCTCTCTCAGGCAAACTAAGACAAAATCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCCAGAGCCAAAGCTCTCTCAGGCAAACTAAGACAAAATCTCTC  250

seq1  ATCATTTTGCCACAGGCCCAGCCCACCAGATCTCTGAGAGGGGCCACTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTGCCACAGGCCCAGCCCACCAGATCTCTGAGAGGGGCCACTCG  300

seq1  TGACTGTACTAGCATTGTGACTTCTCCCTTGTGCACTGCCACAACCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTACTAGCATTGTGACTTCTCCCTTGTGCACTGCCACAACCAGAT  350

seq1  GTGCACTGCCACAACCAGGTGTGCACTGTCACAACCAGATGTGCACTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGCCACAACCAGGTGTGCACTGTCACAACCAGATGTGCACTGCC  400

seq1  ACAACCAGATGTGCACTGCCACAACCAGGTGTGCACTGCCACAACCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGATGTGCACTGCCACAACCAGGTGTGCACTGCCACAACCAGAT  450

seq1  GTGCACTGCCACAACCAGGTGTGCACTGTCACAACCAGATGCGCACTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGCCACAACCAGGTGTGCACTGTCACAACCAGATGCGCACTGCC  500

seq1  ACAACCAGGTGTGCACTGCCACAACCAGATGTGCACTGTCACAACCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGGTGTGCACTGCCACAACCAGATGTGCACTGTCACAACCAGGT  550

seq1  GTGTACTGCCACAACCAGATGTGCACTGCCACAACCAGGTGTGCACTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTGCCACAACCAGATGTGCACTGCCACAACCAGGTGTGCACTATC  600

seq1  ACAACCAGATGTGCACTGCCACAACCAGGTGTGCACTATTATAACCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGATGTGCACTGCCACAACCAGGTGTGCACTATTATAACCAGAT  650

seq1  TTGTGCAGCACTGGGGATTGACTCCAGGACTTTGCGCATGCTAGGCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGCACTGGGGATTGACTCCAGGACTTTGCGCATGCTAGGCAAAC  700

seq1  ACTCTAGAAGCACACACCTCCCATTTGTTTGTTTTTGTTTGTTTATTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGAAGCACACACCTCCCATTTGTTTGTTTTTGTTTGTTTATTTAC  750

seq1  AGGTCAGACGATAACTTGGGGGAGTTAGTTTTTTCCTAACATGTGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGACGATAACTTGGGGGAGTTAGTTTTTTCCTAACATGTGAATTC  800

seq1  TGGGGATCAAATTCAGGCCATCAGACTTGGTGGTGAGTATGGCTACCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATCAAATTCAGGCCATCAGACTTGGTGGTGAGTATGGCTACCTCA  850

seq1  TCTTACAAGCTCAGCTAAGGGTTGACTCAGAATGGTCCTGCTGAGCAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTTACAAGCTCAGCTAAGGGTTGACTCAGAATGGTCCTGCTGAGC-AAA  899

seq1  AAGGAAACTGAGGCACACAGGTTAAGGGAGGAACTATGAGCTGGCAGCTG  950
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  AAGGAAACTGAGGCACACA-GTTAA-GGAGGAACTATGAGCTGGCAGCTG  947

seq1  GCTGCTGACAACCTCACATATTTCCCCTTCAGCTCAGTGTTCTCCACACT  1000
      ||||||||||  |||| |||||| ||||||||||||||| ||||||||||
seq2  GCTGCTGACA--CTCAAATATTT-CCCTTCAGCTCAGTG-TCTCCACACT  993

seq1  GCACTTCCTAGAGAAATCATCTCTACCTACGTGATCCTCCCTACGCGGTC  1050
      |||||| |||||| |||||||| || |||||||||||| ||||||| |||
seq2  GCACTT-CTAGAG-AATCATCTTTA-CTACGTGATCCT-CCTACGC-GTC  1038

seq1  CTCCCTAAGCCGCTCTCT  1068
      || |||||||||||||||
seq2  CT-CCTAAGCCGCTCTCT  1055