BAC Information

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BAC

Clone NameB6Ng01-090K20
Chromosome12 (Build37)
Map Location 60,516,560 - 60,517,735
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
Downstream geneLOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090K20.bB6Ng01-090K20.g
ACCDH902913DH902914
length1,1521,186
definitionDH902913|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K20, 5' end.DH902914|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccttttgttagaatcattgttcccaaggtttagaaatatcgca
actatgttatcaacttagtgggaggcagagaagcaggactattgctcttg
ctcagtgtctccttctcattttagacctatggtttatctgttatatagtt
atcctgctcacacctatgagcccagtgctctgtccagctcatatgcattc
ttttgttttattctcagtgtgttatctaatttttgggtattatgtgggtc
agatactgcaacaacttaactgatacagaattttcaaaaaacaaaacaaa
acaaaacaaaaccacttctaatctagtaggataagagatgtgttctgctg
taaagcaaagattcctggggttgaatcctggctctactgtttcttggcca
tatgaccttgcattaaaaataaaagcaagaccctaatattatctccactg
tgaaatgtttggatcagggtctagcacagaacttgctcctgctggtaaaa
gctggatatctctattcattgttagataaagagggcacctgcaacccaca
tccctgtgagaggacggagtttccttcagagtgcaatcgtccatcataga
gaccgtgaagagcctgaccacccgagtttggtgctgcctggccttttatg
tttgttcttgattgagattctatgttctattttgggaataataataataa
taataataataataataataaagaaggagaaggaggagaaggagaaggag
aagaagaaaggaagcataaaggaatcctgatacaggttggtttgttatta
tttgcctctctacagtttgaacatttagaaaacaatttctggttcctaaa
ttatgctaaattaaagggtttcaatggattaatcaaagtgttctataatc
tgcctctatagaagacaggagtatacatgagctagaaaacataaaacaaa
ccaaacatagagaagcatttatggtgttttcttctgcttctgtgtgcgct
gatgtatgcagagaatagcaatcagatggcttctgctcctccaaggtagg
cagtgactgagatcctttggatctttattcatttgcattaaaaactaaag
ctcttctattaaagacttattttggatttcaaggacgtcaccaatcattg
aa
gaattcatgcccagtactataaacctagccaattaccttagctgatgagg
tcatagaccctactactgccattttcctaagccagtgttatttctatctg
cattctaaatacttgtctttatatgcatcagtgcatgtagttctcaccct
tcatcaaagatgctttttttttccttaagcaaacagagatcactacagaa
atctcatctggtgacaacatagggaatacttaactgtggtgtgcccaacc
acaactgatacatctacaacacaatccttacaccaaaggctcagagacat
cacagaagagcgggcagaaagttatatgagccagatgatcaggatgtctg
ctgtgaagtagtgtcttctatatgtaactcagagcttcacctatgcaatc
tcagcaatatggtcaccaaaacaaggtcagcacaatgacaacagttaaca
acctgagttgaatggggaaaaatctcccaagatcttcactcccaggtgaa
gatccataatcaatggcagctaagagagagattaggtcttcatcaggaat
aagcctcctgatatgttatccaagcagaagtagccagccttaaacacaca
tacatacatattaagtagacaccacaggttgtatttgtgcatacatatgt
tacatttatatgtaaccattataaagaagagagcatgaacttaatgagtg
gaaaggacacaggaggaaatggaataaggaaggggtataataatagagat
atagtatttatatgtgctattctcaagaaaacttgtaagtaagaaaagga
aacaataacaacaatgctggagagggtgtaaggaagaggggaccctcatc
cactgttagtgagagatgcaactggtacagtgtagaaagtggtgtgagag
tcctcaaaaggtaactactatcacattttttatataagttttgcaaataa
agtagtcctgctattcctcctcagtaatacccaagtgctctggtgtttct
cagagagatattttctcatcaggctgtcatggaccacttttatgacagta
aggaacagactaatttcaatcaatgatattcattagaattgcgtgcttcc
aagactgaccatgatattgaaattttagatgagtgacctgaactttatta
gtgaaccgaccttaaatacgaatccttgtcgctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60516560_60517735
seq2: B6Ng01-090K20.b_50_1201

seq1  GAATTCTCCTTTTGTTAGAATCATTGTTCCCAAGGTTTAGAAATATCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTGTTAGAATCATTGTTCCCAAGGTTTAGAAATATCGCA  50

seq1  ACTATGTTATCAACTTAGTGGGAGGCAGAGAAGCAGGACTATTGCTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTATCAACTTAGTGGGAGGCAGAGAAGCAGGACTATTGCTCTTG  100

seq1  CTCAGTGTCTCCTTCTCATTTTAGACCTATGGTTTATCTGTTATATAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTCTCCTTCTCATTTTAGACCTATGGTTTATCTGTTATATAGTT  150

seq1  ATCCTGCTCACACCTATGAGCCCAGTGCTCTGTCCAGCTCATATGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTCACACCTATGAGCCCAGTGCTCTGTCCAGCTCATATGCATTC  200

seq1  TTTTGTTTTATTCTCAGTGTGTTATCTAATTTTTGGGTATTATGTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTATTCTCAGTGTGTTATCTAATTTTTGGGTATTATGTGGGTC  250

seq1  AGATACTGCAACAACTTAACTGATACAGAATTTTCAAAAAACAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGCAACAACTTAACTGATACAGAATTTTCAAAAAACAAAACAAA  300

seq1  ACAAAACAAAACCACTTCTAATCTAGTAGGATAAGAGATGTGTTCTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACCACTTCTAATCTAGTAGGATAAGAGATGTGTTCTGCTG  350

seq1  TAAAGCAAAGATTCCTGGGGTTGAATCCTGGCTCTACTGTTTCTTGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAAGATTCCTGGGGTTGAATCCTGGCTCTACTGTTTCTTGGCCA  400

seq1  TATGACCTTGCATTAAAAATAAAAGCAAGACCCTAATATTATCTCCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTTGCATTAAAAATAAAAGCAAGACCCTAATATTATCTCCACTG  450

seq1  TGAAATGTTTGGATCAGGGTCTAGCACAGAACTTGCTCCTGCTGGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTTTGGATCAGGGTCTAGCACAGAACTTGCTCCTGCTGGTAAAA  500

seq1  GCTGGATATCTCTATTCATTGTTAGATAAAGAGGGCACCTGCAACCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATATCTCTATTCATTGTTAGATAAAGAGGGCACCTGCAACCCACA  550

seq1  TCCCTGTGAGAGGACGGAGTTTCCTTCAGAGTGCAATCGTCCATCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGAGAGGACGGAGTTTCCTTCAGAGTGCAATCGTCCATCATAGA  600

seq1  GACCGTGAAGAGCCTGACCACCCGAGTTTGGTGCTGCCTGGCCTTTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTGAAGAGCCTGACCACCCGAGTTTGGTGCTGCCTGGCCTTTTATG  650

seq1  TTTGTTCTTGATTGAGATTCTATGTTCTATTTTGGGAATAATAATAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTGATTGAGATTCTATGTTCTATTTTGGGAATAATAATAATAA  700

seq1  TAATAATAATAATAATAATAAAGAAGGAGAAGGAGGAGAAGGAGAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATAAAGAAGGAGAAGGAGGAGAAGGAGAAGGAG  750

seq1  AAGAAG-AAGGAAGCATAAAGGAATCCTGATACAGGTTGGTTTGTTATTA  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAGGAAGCATAAAGGAATCCTGATACAGGTTGGTTTGTTATTA  800

seq1  TTTGCCTCTCTACAGTTTGAACATTTAGAAAACAATTTCTGGTTCCTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTCTACAGTTTGAACATTTAGAAAACAATTTCTGGTTCCTAAA  850

seq1  TTATGCTAAATT-AAGGGTTTCAATGGATTAATCAAGGTGTTCTATAATC  898
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  TTATGCTAAATTAAAGGGTTTCAATGGATTAATCAAAGTGTTCTATAATC  900

seq1  TGCCTCTATAGAAGACAGGGAGTAATTACATGAGCTAGAAAACATAAAAC  948
      ||||||||||||||||| ||||||  ||||||||||||||||||||||||
seq2  TGCCTCTATAGAAGACA-GGAGTA--TACATGAGCTAGAAAACATAAAAC  947

seq1  AAACCAAACATAAGGAGAAAAGGCAATTTATTGGTGTTTTCTTCTTGCTT  998
      ||||||||||||  |||||   || ||||| ||||||||||||| |||||
seq2  AAACCAAACATA--GAGAA---GC-ATTTA-TGGTGTTTTCTTC-TGCTT  989

seq1  CTGTGTGCGGCTTGATGTATGCAGAGAATAGCAATCAGATTGGCTTCTGC  1048
      |||||||||   ||||||||||||||||||||||||||| ||||||||||
seq2  CTGTGTGCG--CTGATGTATGCAGAGAATAGCAATCAGA-TGGCTTCTGC  1036

seq1  TCCTCCAGGGGTAGGCAGTGACTGGAGGATCCTTTTGATCCTTTTATTCA  1098
      |||||||  |||||||||||||||   |||||||| ||||  ||||||||
seq2  TCCTCCA-AGGTAGGCAGTGACTG--AGATCCTTTGGATC--TTTATTCA  1081

seq1  TTTTGCATTAAAAACTATAGCTCTTCTAATTTATAGACTTATTGTGAATG  1148
       |||||||||||||||| ||||||||||  ||| ||||||||| || || 
seq2  -TTTGCATTAAAAACTAAAGCTCTTCTA--TTAAAGACTTATTTTGGATT  1128

seq1  TCAAGGAAATGTCACCCAAATCATTGAA  1176
      ||||||  | ||||||  ||||||||||
seq2  TCAAGG--ACGTCACC--AATCATTGAA  1152