BAC Information

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BAC

Clone NameB6Ng01-092C15
Chromosome12 (Build37)
Map Location 57,395,768 - 57,518,381
singlet/doubletdoublet
Overlap geneMbip, EG621837
Upstream genePpp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601
Downstream geneE030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092C15.bB6Ng01-092C15.g
ACCDH904000DH904001
length1,1191,154
definitionDH904000|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C15, 5' end.DH904001|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,395,768 - 57,396,898)(57,517,219 - 57,518,381)
sequence
gaattccagatgtcacacagctctctgaacgtgcttctgctagagcacga
ggcaaatcatagtcagctgctgcggacatcccccccacctaggattaaaa
tgaaagcacattcttaaccaatattccagaattctcaaaaaaaaaatgtc
actatagggtgggtatgcagccgttgcacatgcacatgaaacatccacac
atacaaaataaaatacataaatctcttataccattaaaaaaaattttttt
taaaaaggtaactaattggctcaaagtatgaattgctagtgtatttaagg
ggtgggggacttaattcaacgtgatggttgagaattcacccatatggaag
tgtgggcatcttgagctgcacagctgggctgttttatttgaagcaataga
aataaccaacaaggtcatcataaagaaaagtgaggtcagaaaacgacgtg
gcaaatagattgtgatggttgtgtttaatactggcttaaggcactgggtg
tgtttctcaacactttgcaaggtcaaaataaggggacacattgaggttat
gcttattttttcaaatgtggaattgaaacccagagaacttgtaatttttt
tggtgcaaaaccacacagtgaatggaagagcagttttttttttaagataa
aaagtactaattctaaggtacactggaatgcacaagacgttggcaggtca
gcttcttggttcctttaaatttagattttgaaagttgtagagaaaagaac
agaatttttttaaactacctggagaaagatgaaaagaaaactattaggat
aaaaattagaaagtagggagaaaaagccaaggcctaggactgcactgttt
tgagaagctacgatgaatttcaacattcagtatgtggatccgatgaaaga
aagaactagtggtgttagaatgaagaaagtggttccttttagtggtatct
atttagtgcagctgaagttgggctaggatctgtgggtgctaggcaggagc
tctatactcttgagctgtttctcagcctcttctcacgttttacagtctta
gaaggctcttcaccacacaggttgccctgactccacttgtagccaggcag
cttacattttggattttct
gaattctgtgtctcagagagaagtcctggggaaaaatactgtacaactaa
tacatttttcagaggagaactaaaagggaagagacggttaattagtaaga
aaggaagagagtcttggatgagcaactagttctccacaagcacaatgatg
tgtgcagccaaattgacttcctagtgagcttgctttggtactgtacaatt
aacagaaccaccgtaaaccaggagcagaaagaaaattttagaataaacaa
atgtatgctttgggtcatagcattttaacatagcactgttgttcagcttg
actctgcagtgactaaagcaaggagtcttaaagcagaggtggtttcatag
atttcaggtaaaaacctatccttgatatacgttcagaaaatgacatgttt
attccagcatgccttaaagtcatcagagcatcttcaagttttccttagag
atagttggaggattttttgtctggtttttgagacaacagagatagaacct
ggggctggcttgtcgaatgcccagcatgcctgctcccaccaagctggcct
cagctccatttttactttttacattgaaacaggatcttcctaagttgctg
agtctagaatgaacttctgatagccttgggggggtggtgattacaaaaga
atttaaattgtattgtcatataataataaattattagtacatacactttt
tgtgattataaaccatcgggaaagagagaacagagaagaatctcagtata
atctgaaatatactcaaaaaatggaataggaaattattaagatgtttgcc
atatttatatttaaaaatagctctattttcagagtctactactcatttag
aaagcaaatggacccttttatttcaagagaaaaatcagcctgttaaagat
atgcctagagtcatcacactcacatgcttagagtcatatttacgactcta
taaacaactaatatctacatcataattctatccttcagatagacattgtc
agtcatgtgactctgagccacttgaagctgtttaactacagtctcttacg
acttattaggataccaggaatttcattaccaagaacttaatttcttccag
acaaaggaatttctcaaatttaactctggttgtgaaggcccttttccgtg
ttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57395768_57396898
seq2: B6Ng01-092C15.b_44_1162

seq1  GAATTCCAGATGTCACACAGCTCTCTGAACGTGCTTCTGCTAGAGCACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGTCACACAGCTCTCTGAACGTGCTTCTGCTAGAGCACGA  50

seq1  GGCAAATCATAGTCAGCTGCTGCGGACATCCCCCCCACCTAGGATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATCATAGTCAGCTGCTGCGGACATCCCCCCCACCTAGGATTAAAA  100

seq1  TGAAAGCACATTCTTAACCAATATTCCAGAATTCTCAAAAAAAAAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACATTCTTAACCAATATTCCAGAATTCTCAAAAAAAAAATGTC  150

seq1  ACTATAGGGTGGGTATGCAGCCGTTGCACATGCACATGAAACATCCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGGGTGGGTATGCAGCCGTTGCACATGCACATGAAACATCCACAC  200

seq1  ATACAAAATAAAATACATAAATCTCTTATACCATTAAAAAAAATTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATAAAATACATAAATCTCTTATACCATTAAAAAAAATTTTTTT  250

seq1  TAAAAAGGTAACTAATTGGCTCAAAGTATGAATTGCTAGTGTATTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGTAACTAATTGGCTCAAAGTATGAATTGCTAGTGTATTTAAGG  300

seq1  GGTGGGGGACTTAATTCAACGTGATGGTTGAGAATTCACCCATATGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGACTTAATTCAACGTGATGGTTGAGAATTCACCCATATGGAAG  350

seq1  TGTGGGCATCTTGAGCTGCACAGCTGGGCTGTTTTATTTGAAGCAATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCATCTTGAGCTGCACAGCTGGGCTGTTTTATTTGAAGCAATAGA  400

seq1  AATAACCAACAAGGTCATCATAAAGAAAAGTGAGGTCAGAAAACGACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAACAAGGTCATCATAAAGAAAAGTGAGGTCAGAAAACGACGTG  450

seq1  GCAAATAGATTGTGATGGTTGTGTTTAATACTGGCTTAAGGCACTGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAGATTGTGATGGTTGTGTTTAATACTGGCTTAAGGCACTGGGTG  500

seq1  TGTTTCTCAACACTTTGCAAGGTCAAAATAAGGGGACACATTGAGGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAACACTTTGCAAGGTCAAAATAAGGGGACACATTGAGGTTAT  550

seq1  GCTTATTTTTTCAAATGTGGAATTGAAACCCAGAGAACTTGTAATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTTTCAAATGTGGAATTGAAACCCAGAGAACTTGTAATTTTTT  600

seq1  TGGTGCAAAACCACACAGTGAATGGAAGAGCAGTTTTTTTTTTAAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAAAACCACACAGTGAATGGAAGAGCAGTTTTTTTTTTAAGATAA  650

seq1  AAAGTACTAATTCTAAGGTACACTGGAATGCACAAGACGTTGGCAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTAATTCTAAGGTACACTGGAATGCACAAGACGTTGGCAGGTCA  700

seq1  GCTTCTTGGTTCCTTTAAATTTAGATTTTGAAAGTTGTAGAGAAAAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGTTCCTTTAAATTTAGATTTTGAAAGTTGTAGAGAAAAGAAC  750

seq1  AGAATTTTTTTAAACTACCTGGAGAAAGATGAAAAGAAAACTATTAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTTTTAAACTACCTGGAGAAAGATGAAAAGAAAACTATTAGGAT  800

seq1  AAAAATTAGAAAGTAGGGAGAAAAAGCCAAGGCCTAGGACTGCACTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGAAAGTAGGGAGAAAAAGCCAAGGCCTAGGACTGCACTGTTT  850

seq1  TGAGAAGCTACGATGAATTTCAACATTCAGTATGTGGATCCGATGAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCTACGATGAATTTCAACATTCAGTATGTGGATCCGATGAAAGA  900

seq1  AAGAACTAGTGGTGTTAGAAATGAAGAAAGTGGTTCCTTTTAGTGGTATC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGAACTAGTGGTGTTAG-AATGAAGAAAGTGGTTCCTTTTAGTGGTATC  949

seq1  TATTTAGTGCAGCTGAAGGTTGGCCTAGGATCCTGTGGGTGCTAGGCAGG  1000
      ||||||||||||||||| ||||| ||||||| ||||||||||||||||||
seq2  TATTTAGTGCAGCTGAA-GTTGGGCTAGGAT-CTGTGGGTGCTAGGCAGG  997

seq1  AGCTCTATACTCCTGAGCTGTCTTCTCAGCCCCCTCTCACGTTTTACAAG  1050
      |||||||||||| |||||||| ||||||||| | ||||||||||||||  
seq2  AGCTCTATACTCTTGAGCTGT-TTCTCAGCCTCTTCTCACGTTTTACA--  1044

seq1  TTCTTAGAAAGGCTC-TCACCACACAGGTTGGCCCTGAACTCACTCTGTA  1099
       |||||| ||||||| |||||||||||||| |||||||   |||| ||||
seq2  GTCTTAG-AAGGCTCTTCACCACACAGGTT-GCCCTGACTCCACT-TGTA  1091

seq1  GCCCAGGCAGGCTTTAACATTTTTGATTTTCT  1131
      | ||||||| ||||  ||||||| ||||||||
seq2  G-CCAGGCA-GCTT--ACATTTTGGATTTTCT  1119

seq1: chr12_57517219_57518381
seq2: B6Ng01-092C15.g_69_1222 (reverse)

seq1  GGAACACGGAAAAGGGGCCTTCA-ACACAGAGTTTAAATATTGAGAAATT  49
      ||||||||||||| ||||||||| |  ||||| |||||| ||||||||||
seq2  GGAACACGGAAAA-GGGCCTTCACAACCAGAG-TTAAAT-TTGAGAAATT  47

seq1  CCTTAGTCTGG-AGAAATTAAGTTCTTTGGTAATGGAATTCCTGGTATCC  98
      |||| |||||| ||||||||||||| ||||||||| ||||||||||||||
seq2  CCTTTGTCTGGAAGAAATTAAGTTC-TTGGTAATGAAATTCCTGGTATCC  96

seq1  TAATAAGTCCGTAAGAGACTTGTAGTTAAACAGGCTTCAAGTGGCTCAGA  148
      |||||||| |||||||||| |||||||||||| |||||||||||||||||
seq2  TAATAAGT-CGTAAGAGAC-TGTAGTTAAACA-GCTTCAAGTGGCTCAGA  143

seq1  GTCACACTGACTGACAATGTCTTATCTGAAGGATAGAATTATGATGTAGA  198
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  GTCACA-TGACTGACAATGTC-TATCTGAAGGATAGAATTATGATGTAGA  191

seq1  TATTAGTTGTTTATAGAGTCGTACATTATGACTCTAAAGCATGTGAGTGT  248
      ||||||||||||||||||||||| | ||||||||| ||||||||||||||
seq2  TATTAGTTGTTTATAGAGTCGTA-AATATGACTCT-AAGCATGTGAGTGT  239

seq1  GATGACTCTAGGCATATCTTTAACAGGCTGATTTTTCTCTTGAAATAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCTAGGCATATCTTTAACAGGCTGATTTTTCTCTTGAAATAAAA  289

seq1  GGGTCCATTTGCTTTCTAAATGAGTAGTAGACTCTGAAAATAGAGCTATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCATTTGCTTTCTAAATGAGTAGTAGACTCTGAAAATAGAGCTATT  339

seq1  TTTAAATATAAATATGGCAAACATCTTAATAATTTCCTATTCCATTTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATAAATATGGCAAACATCTTAATAATTTCCTATTCCATTTTTT  389

seq1  GAGTATATTTCAGATTATACTGAGATTCTTCTCTGTTCTCTCTTTCCCGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATTTCAGATTATACTGAGATTCTTCTCTGTTCTCTCTTTCCCGA  439

seq1  TGGTTTATAATCACAAAAAGTGTATGTACTAATAATTTATTATTATATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATAATCACAAAAAGTGTATGTACTAATAATTTATTATTATATGA  489

seq1  CAATACAATTTAAATTCTTTTGTAATCACCACCCCCCCAAGGCTATCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAATTTAAATTCTTTTGTAATCACCACCCCCCCAAGGCTATCAGA  539

seq1  AGTTCATTCTAGACTCAGCAACTTAGGAAGATCCTGTTTCAATGTAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCTAGACTCAGCAACTTAGGAAGATCCTGTTTCAATGTAAAAA  589

seq1  GTAAAAATGGAGCTGAGGCCAGCTTGGTGGGAGCAGGCATGCTGGGCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATGGAGCTGAGGCCAGCTTGGTGGGAGCAGGCATGCTGGGCATT  639

seq1  CGACAAGCCAGCCCCAGGTTCTATCTCTGTTGTCTCAAAAACCAGACAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAGCCAGCCCCAGGTTCTATCTCTGTTGTCTCAAAAACCAGACAAA  689

seq1  AAATCCTCCAACTATCTCTAAGGAAAACTTGAAGATGCTCTGATGACTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCCAACTATCTCTAAGGAAAACTTGAAGATGCTCTGATGACTTT  739

seq1  AAGGCATGCTGGAATAAACATGTCATTTTCTGAACGTATATCAAGGATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGCTGGAATAAACATGTCATTTTCTGAACGTATATCAAGGATAG  789

seq1  GTTTTTACCTGAAATCTATGAAACCACCTCTGCTTTAAGACTCCTTGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACCTGAAATCTATGAAACCACCTCTGCTTTAAGACTCCTTGCTT  839

seq1  TAGTCACTGCAGAGTCAAGCTGAACAACAGTGCTATGTTAAAATGCTATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACTGCAGAGTCAAGCTGAACAACAGTGCTATGTTAAAATGCTATG  889

seq1  ACCCAAAGCATACATTTGTTTATTCTAAAATTTTCTTTCTGCTCCTGGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGCATACATTTGTTTATTCTAAAATTTTCTTTCTGCTCCTGGTT  939

seq1  TACGGTGGTTCTGTTAATTGTACAGTACCAAAGCAAGCTCACTAGGAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTGGTTCTGTTAATTGTACAGTACCAAAGCAAGCTCACTAGGAAGT  989

seq1  CAATTTGGCTGCACACATCATTGTGCTTGTGGAGAACTAGTTGCTCATCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGCTGCACACATCATTGTGCTTGTGGAGAACTAGTTGCTCATCC  1039

seq1  AAGACTCTCTTCCTTTCTTACTAATTAACCGTCTCTTCCCTTTTAGTTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCTTCCTTTCTTACTAATTAACCGTCTCTTCCCTTTTAGTTCT  1089

seq1  CCTCTGAAAAATGTATTAGTTGTACAGTATTTTTCCCCAGGACTTCTCTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAAAATGTATTAGTTGTACAGTATTTTTCCCCAGGACTTCTCTC  1139

seq1  TGAGACACAGAATTC  1163
      |||||||||||||||
seq2  TGAGACACAGAATTC  1154