BAC Information

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BAC

Clone NameB6Ng01-092D09
Chromosome12 (Build37)
Map Location 31,553,228 - 31,697,263
singlet/doubletdoublet
Overlap geneAcp1, Sh3yl1
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18, LOC100043055
Downstream geneLOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092D09.bB6Ng01-092D09.g
ACCDH904034DH904035
length1,059957
definitionDH904034|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D09, 5' end.DH904035|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,696,198 - 31,697,263)(31,553,228 - 31,553,916)
sequence
gaattccttggcacggctgtctgagggctccactgaacaagctgatattt
agcaagattctgtgcatttttttcccctcagatctgtctaaacactataa
accccaattctgaagcctcattttactgtaaccgttggtgccagggtttc
aaattatggattactttgggagatctttaaacactaaagtaactttgtct
gagaaaagatgctttttttttttaaactctagaatgattctagcgcataa
cttatttgagaacaactggcttattcatcaccaatgtaatgagtaactgg
tcaaaatgttgtttgtccagaatctaaagtatttgctggtatcatccaag
tctctacttattcttgcttcataagagtaacctgagtcaagggcatgtaa
tctttcttcagctgagctcagcttcttgtcaggccctaactccaaaagtt
tcccaaacttaccaaatagcactatgggccaaaggccaagaataagtgat
cagagcttttgggagatgcttcagattctagtcataacaggtgctaggaa
caagcaggcaggattttggctggacagggtgggaggtgatggccaggcct
aatgttttagatactacgtacggtgtaattactgttttctatttttgcat
cttaaaataattaaattcataggaactaaaaataagttctgaaccttttc
aaagaagtaataacagctttatctcagaaaataaattaactccaataatg
acacttacttgtattgaagaagaatggtgtgagctcctttgtagcacatc
cttgactcattaagaaactacacacctaagcaccagtcacaaggtcaacc
taccacctcctcatttcggttgagatctaaagtgggggagtctgatttga
gaaggaagacataattcacttgcataaatatttctgtttcctatcccttg
aaatataaaattgtgaaatcaattatggatagaagaaatgatagaaaaca
ttaaagacctgacacattatggcaagagaaatgtgaatagaggatatgtt
aaggcgtct
gaattccacggataaacatagacctgaatgcatattgctcttcacaattc
cttttacttcttagctgagctaaattgcaaatgtttacaagcacagagtt
tgtgttctgctcttcaccagaacagcatgtagcttagtgcagagtccaga
tacgaattaagacacattcataaccaggtagtataagtcaggccatgaaa
taagaatgaaaatctgcaactacctggggtgaggaggtagggtccatctc
caggatgagtcagagacctggaataagggaggtgaccgagattcaatgca
ggtgaccttaactgtgactcactacactggggatatggaacctgaagagt
ccacctcctgtatgtaagccaggcaggacccccagtggagtgatagaaac
accaacccacccacaaaattttcaacccaaaatttatcctgtctataaga
aattcaggcatgggggatggagcagagactgaggaaatggccaaccaata
actgacccaacttgagatccatcccatgagcaagcaccaatccctgacac
tattaatgatactctgttgtgctcacagacacgagtctagcatggctgac
ctctgagaggctccacccagcagctgactcagaaacagtcacccacagcc
aaacagtggatggaccttggggacttttatggaagaatagaaggaaggat
tgcaggctctaaaggggataggaactccacaggaagaccaacagactcaa
ctaacctagacccttggggctctcagtgtgtgaattaccaaccaaagaac
atacactggctggacctacgcctctgggcacatatatagcagatatgcag
gtgggccttcatgtgggtcccaacaactagaacgggggctatcccaaaaa
gttgtgtctgtatctgggatttgttcttctagctggtctgccctgtgtga
cctagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31696198_31697263
seq2: B6Ng01-092D09.b_45_1103 (reverse)

seq1  AGACGCCTTTACATATCCTTCTATTCACATTTCTCTTTGCCATTAATGTG  50
      ||||||||| |||||||| |||||||||||||||| |||||| |||||||
seq2  AGACGCCTTAACATATCC-TCTATTCACATTTCTC-TTGCCA-TAATGTG  47

seq1  TCATGTCTTTATATGTTTTCTATCATTTCTTCTATCCATAATTGATTTCA  100
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTTTA-ATGTTTTCTATCATTTCTTCTATCCATAATTGATTTCA  96

seq1  CAATTTTTATAATTTCAAGGGATAGGAAACAGAAATATTTATGCAAGTGA  150
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAA-TTTTAT-ATTTCAAGGGATAGGAAACAGAAATATTTATGCAAGTGA  144

seq1  ATTATGTCTTTCCTTCTCAAATCAGACTCCCCCACTTTAGATCTCAACCG  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTC-TTCCTTCTCAAATCAGACTCCCCCACTTTAGATCTCAACCG  193

seq1  AAATGAGGAGGTGGTAGGTTGACCTTGTGACTGGTGCTTAGGTGTGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGAGGTGGTAGGTTGACCTTGTGACTGGTGCTTAGGTGTGTAGT  243

seq1  TTCTTAATGAGTCAAGGATGTGCTACAAAGGAGCTCACACCATTCTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGAGTCAAGGATGTGCTACAAAGGAGCTCACACCATTCTTCTT  293

seq1  CAATACAAGTAAGTGTCATTATTGGAGTTAATTTATTTTCTGAGATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAGTAAGTGTCATTATTGGAGTTAATTTATTTTCTGAGATAAAG  343

seq1  CTGTTATTACTTCTTTGAAAAGGTTCAGAACTTATTTTTAGTTCCTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTACTTCTTTGAAAAGGTTCAGAACTTATTTTTAGTTCCTATGA  393

seq1  ATTTAATTATTTTAAGATGCAAAAATAGAAAACAGTAATTACACCGTACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTATTTTAAGATGCAAAAATAGAAAACAGTAATTACACCGTACG  443

seq1  TAGTATCTAAAACATTAGGCCTGGCCATCACCTCCCACCCTGTCCAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCTAAAACATTAGGCCTGGCCATCACCTCCCACCCTGTCCAGCCA  493

seq1  AAATCCTGCCTGCTTGTTCCTAGCACCTGTTATGACTAGAATCTGAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGCCTGCTTGTTCCTAGCACCTGTTATGACTAGAATCTGAAGCA  543

seq1  TCTCCCAAAAGCTCTGATCACTTATTCTTGGCCTTTGGCCCATAGTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAAAGCTCTGATCACTTATTCTTGGCCTTTGGCCCATAGTGCTA  593

seq1  TTTGGTAAGTTTGGGAAACTTTTGGAGTTAGGGCCTGACAAGAAGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAGTTTGGGAAACTTTTGGAGTTAGGGCCTGACAAGAAGCTGAG  643

seq1  CTCAGCTGAAGAAAGATTACATGCCCTTGACTCAGGTTACTCTTATGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGAAGAAAGATTACATGCCCTTGACTCAGGTTACTCTTATGAAG  693

seq1  CAAGAATAAGTAGAGACTTGGATGATACCAGCAAATACTTTAGATTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATAAGTAGAGACTTGGATGATACCAGCAAATACTTTAGATTCTGG  743

seq1  ACAAACAACATTTTGACCAGTTACTCATTACATTGGTGATGAATAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAACATTTTGACCAGTTACTCATTACATTGGTGATGAATAAGCCA  793

seq1  GTTGTTCTCAAATAAGTTATGCGCTAGAATCATTCTAGAGTTTAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTCAAATAAGTTATGCGCTAGAATCATTCTAGAGTTTAAAAAAA  843

seq1  AAAAGCATCTTTTCTCAGACAAAGTTACTTTAGTGTTTAAAGATCTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATCTTTTCTCAGACAAAGTTACTTTAGTGTTTAAAGATCTCCCA  893

seq1  AAGTAATCCATAATTTGAAACCCTGGCACCAACGGTTACAGTAAAATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCCATAATTTGAAACCCTGGCACCAACGGTTACAGTAAAATGAG  943

seq1  GCTTCAGAATTGGGGTTTATAGTGTTTAGACAGATCTGAGGGGAAAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAATTGGGGTTTATAGTGTTTAGACAGATCTGAGGGGAAAAAAA  993

seq1  TGCACAGAATCTTGCTAAATATCAGCTTGTTCAGTGGAGCCCTCAGACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAATCTTGCTAAATATCAGCTTGTTCAGTGGAGCCCTCAGACAG  1043

seq1  CCGTGCCAAGGAATTC  1066
      ||||||||||||||||
seq2  CCGTGCCAAGGAATTC  1059

seq1: chr12_31553228_31553916
seq2: B6Ng01-092D09.g_68_756

seq1  GAATTCCACGGATAAACATAGACCTGAATGCATATTGCTCTTCACAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGATAAACATAGACCTGAATGCATATTGCTCTTCACAATTC  50

seq1  CTTTTACTTCTTAGCTGAGCTAAATTGCAAATGTTTACAAGCACAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTTCTTAGCTGAGCTAAATTGCAAATGTTTACAAGCACAGAGTT  100

seq1  TGTGTTCTGCTCTTCACCAGAACAGCATGTAGCTTAGTGCAGAGTCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTGCTCTTCACCAGAACAGCATGTAGCTTAGTGCAGAGTCCAGA  150

seq1  TACGAATTAAGACACATTCATAACCAGGTAGTATAAGTCAGGCCATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAATTAAGACACATTCATAACCAGGTAGTATAAGTCAGGCCATGAAA  200

seq1  TAAGAATGAAAATCTGCAACTACCTGGGGTGAGGAGGTAGGGTCCATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGAAAATCTGCAACTACCTGGGGTGAGGAGGTAGGGTCCATCTC  250

seq1  CAGGATGAGTCAGAGACCTGGAATAAGGGAGGTGACCGAGATTCAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGAGTCAGAGACCTGGAATAAGGGAGGTGACCGAGATTCAATGCA  300

seq1  GGTGACCTTAACTGTGACTCACTACACTGGGGATATGGAACCTGAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTTAACTGTGACTCACTACACTGGGGATATGGAACCTGAAGAGT  350

seq1  CCACCTCCTGTATGTAAGCCAGGCAGGACCCCCAGTGGAGTGATAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCTGTATGTAAGCCAGGCAGGACCCCCAGTGGAGTGATAGAAAC  400

seq1  ACCAACCCACCCACAAAATTTTCAACCCAAAATTTATCCTGTCTATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCCACCCACAAAATTTTCAACCCAAAATTTATCCTGTCTATAAGA  450

seq1  AATTCAGGCATGGGGGATGGAGCAGAGACTGAGGAAATGGCCAACCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGCATGGGGGATGGAGCAGAGACTGAGGAAATGGCCAACCAATA  500

seq1  ACTGACCCAACTTGAGATCCATCCCATGAGCAAGCACCAATCCCTGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCAACTTGAGATCCATCCCATGAGCAAGCACCAATCCCTGACAC  550

seq1  TATTAATGATACTCTGTTGTGCTCACAGACACGAGTCTAGCATGGCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGATACTCTGTTGTGCTCACAGACACGAGTCTAGCATGGCTGAC  600

seq1  CTCTGAGAGGCTCCACCCAGCAGCTGACTCAGAAACAGTCACCCACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGGCTCCACCCAGCAGCTGACTCAGAAACAGTCACCCACAGCC  650

seq1  AAACAGTGGATGGACCTTGGGGACTTTTATGGAAGAATA  689
      |||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGGATGGACCTTGGGGACTTTTATGGAAGAATA  689