BAC Information

Click to search

BAC

Clone NameB6Ng01-096D01
Chromosome12 (Build37)1 (Build37)
Map Location 84,023,724 - 84,024,182144,619,909 - 144,620,144
singlet/doubletsingletsinglet
Overlap geneRgs6
Upstream genePcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096D01.bB6Ng01-096D01.g
ACCDH906921DH906922
length454939
definitionDH906921|Mus musculus domesticus DNA, BAC clone: B6Ng01-096D01, 5' end.DH906922|Mus musculus domesticus DNA, BAC clone: B6Ng01-096D01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,023,724 - 84,024,182)(144,619,909 - 144,620,144)
sequence
attcagctacttggtactcatggaatcctctatattgggagcaggcacct
gggacctgggtccatattcacatcctctgaactcatctttcttatcatct
ctgatggcctagagaccatatagcaaccattcaacaggatggcgacatgc
cagctcctgttgtgaccataacccaagcctctagattagagtctttcatt
cctgttgcaatgccaggcgaggagtgccttccttctattcctcaaagttt
agggaggagaaatgtcctgagtactctagaggagtttactgaatcaacag
tcatctctaagtgtaggctggatcttcagtggagtaccagtcactgggta
ccttcaatgcctttcattaaatacccttttctatctagcactacatttta
aagatctatgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tatttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctcagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgccgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgcctcccagaag
ctctgcgactctcgcccgtcccagaaacggctggcactctgtattccaca
aggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcaggccgggcagacccccgtgc
tctcaccaggaaggtggccggctgtctggagctgaagatggcgccgccca
gaagctctgcgactctcgcccgtcccagaaacggctggcactctgtattc
cacacggtcacccgtgcagcctgcccttcgcggagtcccggagcccagaa
ggctcccgccggcgcctgttgccacaaactctcaggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_84023724_84024182
seq2: B6Ng01-096D01.b_48_506 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACATGCACACATAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACATGCACACATAGAT  50

seq1  CTTTAAAATGTAGTGCTAGATAGAAAAGGGTATTTAATGAAAGGCATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATGTAGTGCTAGATAGAAAAGGGTATTTAATGAAAGGCATTGA  100

seq1  AGGTACCCAGTGACTGGTACTCCACTGAAGATCCAGCCTACACTTAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCCAGTGACTGGTACTCCACTGAAGATCCAGCCTACACTTAGAGA  150

seq1  TGACTGTTGATTCAGTAAACTCCTCTAGAGTACTCAGGACATTTCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTGATTCAGTAAACTCCTCTAGAGTACTCAGGACATTTCTCCTC  200

seq1  CCTAAACTTTGAGGAATAGAAGGAAGGCACTCCTCGCCTGGCATTGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTTTGAGGAATAGAAGGAAGGCACTCCTCGCCTGGCATTGCAAC  250

seq1  AGGAATGAAAGACTCTAATCTAGAGGCTTGGGTTATGGTCACAACAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAAAGACTCTAATCTAGAGGCTTGGGTTATGGTCACAACAGGAG  300

seq1  CTGGCATGTCGCCATCCTGTTGAATGGTTGCTATATGGTCTCTAGGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGTCGCCATCCTGTTGAATGGTTGCTATATGGTCTCTAGGCCAT  350

seq1  CAGAGATGATAAGAAAGATGAGTTCAGAGGATGTGAATATGGACCCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGATAAGAAAGATGAGTTCAGAGGATGTGAATATGGACCCAGGT  400

seq1  CCCAGGTGCCTGCTCCCAATATAGAGGATTCCATGAGTACCAAGTAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGCCTGCTCCCAATATAGAGGATTCCATGAGTACCAAGTAGCTG  450

seq1  AATGAATTC  459
      |||||||||
seq2  AATGAATTC  459

seq1: chr1_144619909_144620144
seq2: B6Ng01-096D01.g_558_844 (reverse)

seq1  AGACAGCCGGCCACCTTCCTGGTGAGAGCACGGGGGTCTGCC--------  42
      ||||||||||||||||||||||||||||||||||||||||||        
seq2  AGACAGCCGGCCACCTTCCTGGTGAGAGCACGGGGGTCTGCCCGGCCTGA  50

seq1  -------------------------------------------GGACTCC  49
                                                 |||||||
seq2  GAGGTTTGTGGCACAGGCGCCGGCGGGAGCCTTCTTGGCTCCGGGACTCC  100

seq1  GCGGAGGGCAGGCTGCACGGGAGACTGTGTGGAATACAGAG-GCCAGCCG  98
      ||||||||||||||||||||| |||  |||||||||||||| ||||||||
seq2  GCGGAGGGCAGGCTGCACGGGTGACCTTGTGGAATACAGAGTGCCAGCCG  150

seq1  TTTCTGGGACGGGCGAGAGTCGCAGAGCTTCTGGGGCGGCGCCATCTTCA  148
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  TTTCTGGGACGGGCGAGAGTCGCAGAGCTTCT-GGGAGGCGCCATCTTCA  199

seq1  TCTCCAGACAACCTGCCACCTTCCTGGCGAGAGCCACAGAGCTTCTGAGG  198
       |||||||||||| |||||||||| ||| |||||||||||||||||||||
seq2  GCTCCAGACAACCAGCCACCTTCCCGGCAAGAGCCACAGAGCTTCTGAGG  249

seq1  TGGCGACATCTTCGACTCCAGAAAACCGGCCACCTTCC  236
       |||| |||| ||  |||||||   |||||| ||||||
seq2  CGGCGCCATCCTCAGCTCCAGACGGCCGGCCTCCTTCC  287