BAC Information

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BAC

Clone NameB6Ng01-097A14
Chromosome12 (Build37)16 (Build37)
Map Location 110,036,317 - 110,036,68510,970,059 - 10,971,202
singlet/doubletsingletsinglet
Overlap geneYy1
Upstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164
Downstream geneSlc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097A14.bB6Ng01-097A14.g
ACCDH907516DH907517
length8811,145
definitionDH907516|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A14, 5' end.DH907517|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,036,317 - 110,036,685)(10,970,059 - 10,971,202)
sequence
gaattcacttagatcgcagcgagggagctgctctgctacgtacgaaaccc
cgacccagaagcaggtcgtctacgaatggtttagcgccaggttccacacg
aacgtgcgttcaacgtgacgggcgagagggcggccccctttccggccgca
ccccgtttcccaagacgaacggctctccgcaccggaccccggtcccgacg
cccggcggggggagaccccgcgccgccgcggggacgacgcggggaccccg
ccgagcggggacggacggggacccggctatccggggccaaccgaggctcc
ttcggcgctgccgtatcgttccgcctgggcgggattctgacttagaggcg
ttcagtcataatcccacagatggtagcttcgccccattggctcctcagcc
aagcacatacaccaaatgtatttcactcatgcagtggcacctcttgtttt
gggagggacttaagtggccatgacaataccaaaactaggcaggtcaatta
tctatggacttgtcctttttttttttttttttttttttttttggtttttc
gagacagggtttctctgtgcagccctggctgtcctggaactcactctaga
ccaggctggcctcgaactcagaaatccgccgcctctgcctcccgagggct
gggattaaaggcgtggccaccattgcccggctgggacttgtcttttcaca
agacggtccagaggcgtcacactgtgatgtgacaaataaggacatgtgga
gtattgacaagcaacatgccaggacgtctcgtccgagaagccaggcacac
atcctctttgtgggttggagagtgaaggaagcacacaatgagcattgcat
cgcctgtgtgtgtgtgttgtaccgcctgtgt
gaattcactcggtagaccaggctggccttgaactcagaaatccacctgcc
tctgcctcccaagtgctgggattaaaggcatgcaccagcactgcctggca
tcttcttttttttaaattgtatttatttaatgcataagtgctctgctgca
catatagctgactgcctgaagagggcatcacatccctcctgtgagccacc
atgtggttgctgggaattgaactcatgacctctggaagagcagtcagtgc
tcttggccactgagccatctcaccagccccaaggttttgcttatcttaag
agaagacttcagtatagaccaggctgacctagaacacctgacctgccacc
tcctcagctccccagtgctggaattacagctttgtgccaccaggcctggc
tttaataccagtttcaaaagaactgactgactggtttgatcctgcactgt
cctggccctgagagtaaggccctacctcccaccccaacacacagctcgct
aactgagccatcttcacgagctctgaccgaatcttctggagcagatgaac
agtctctcaggctgtgggctccaacagacacaaacaaacatttataattc
ctaagagagagacagagacagagacagagacacggagatagagaaagcaa
gggccagcaaaatggctcagacagcttccacccacatggtagggaaagag
aactgattcctgcaagctgtcctttgacctctataccaaagcaagccatg
aggtgagtgtgccttatccctcacaaaataattagctttttgtttgtttg
tttgtttgaagaaagtccggccttgtaacatctatttggtggtcttgggc
agctgagtggtcatacaagtcaagtcaggtgatcctgacaaaatccagtt
gccatagttactgggagctttgtggaggaaataaaggagtatccagcttg
tccctctccttcctccccactgtttaactttgccactaggatctttcatt
gttcatccagactcatcttacccagcattcaccaagggaacacaaggagc
aggaggtggttgtcctccgccatctcgaaaagactttctcttagctttag
ctagtttccaaactagactcagaatccttgcaaaaacttgaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_110036317_110036685
seq2: B6Ng01-097A14.b_567_928

seq1  TTTTTTGTTTGTTTTTTGTTTTTCGATTTTTGGTTTTTTGAGACAGGGTT  50
      ||||||     |||||| |||||   |||||||||||| |||||||||||
seq2  TTTTTT-----TTTTTTTTTTTT---TTTTTGGTTTTTCGAGACAGGGTT  42

seq1  TCTCTGTGTAGCCCTGGCTGTCCTGGAACTCCCTCTGTAGACCAGGCTGG  100
      |||||||| |||||||||||||||||||||| |||  |||||||||||||
seq2  TCTCTGTGCAGCCCTGGCTGTCCTGGAACTCACTC--TAGACCAGGCTGG  90

seq1  CCTTGAACTCAGAGATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  150
      ||| ||||||||| ||||||| ||||||||||||| || |||||||||||
seq2  CCTCGAACTCAGAAATCCGCC-GCCTCTGCCTCCCGAGGGCTGGGATTAA  139

seq1  AGATATGCGCCACCA-CGCCCGGCTTAACCCCTCCTCTTGTTCAGATGAC  199
      ||   || |||||||  ||||||||      ||  |||| |||| | |||
seq2  AGGCGTG-GCCACCATTGCCCGGCT--GGGACTTGTCTT-TTCACAAGAC  185

seq1  TCTATTCTTGC-TCCTGCTTTGA-ATAAGAATTATTGAAATAGGAAGAGT  247
        |      || ||   || |||  | | || ||  || ||  | ||  |
seq2  GGTCCAGAGGCGTCACACTGTGATGTGACAAATAAGGACATGTGGAGTAT  235

seq1  TAAAAA--AAAGT---AGAACCTTTATAGTTTTATC--AGAAACGTGCCT  290
      | | ||  ||  |   || ||       || |  ||  |||| |  | | 
seq2  TGACAAGCAACATGCCAGGAC-------GTCTCGTCCGAGAAGCCAGGCA  278

seq1  TACA----GTTTATAGTTTTATCAGAAAAAATACTTTACAGTCCCCCCCC  336
       |||     ||| | | ||    ||  ||   |    ||| |   |    
seq2  CACATCCTCTTTGTGGGTTGGAGAGTGAAGGAAGCACACAATGAGCATTG  328

seq1  CCTCTGTGTGTGTGTGTGTGTGTTGT----GCTGTGT  369
      | ||   |  ||||||||||||||||     ||||||
seq2  CATC---GCCTGTGTGTGTGTGTTGTACCGCCTGTGT  362

seq1: chr16_10970059_10971202
seq2: B6Ng01-097A14.g_68_1212

seq1  GAATTCACTCGGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCAGCACTGCCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCAGCACTGCCTGGCA  100

seq1  TCTTCTTTTTTTTAAATTGTATTTATTTAATGCATAAGTGCTCTGCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTTTTTAAATTGTATTTATTTAATGCATAAGTGCTCTGCTGCA  150

seq1  CATATAGCTGACTGCCTGAAGAGGGCATCACATCCCTCCTGTGAGCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCTGACTGCCTGAAGAGGGCATCACATCCCTCCTGTGAGCCACC  200

seq1  ATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCAGTGC  250

seq1  TCTTGGCCACTGAGCCATCTCACCAGCCCCAAGGTTTTGCTTATCTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCACTGAGCCATCTCACCAGCCCCAAGGTTTTGCTTATCTTAAG  300

seq1  AGAAGACTTCAGTATAGACCAGGCTGACCTAGAACACCTGACCTGCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTTCAGTATAGACCAGGCTGACCTAGAACACCTGACCTGCCACC  350

seq1  TCCTCAGCTCCCCAGTGCTGGAATTACAGCTTTGTGCCACCAGGCCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTCCCCAGTGCTGGAATTACAGCTTTGTGCCACCAGGCCTGGC  400

seq1  TTTAATACCAGTTTCAAAAGAACTGACTGACTGGTTTGATCCTGCACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACCAGTTTCAAAAGAACTGACTGACTGGTTTGATCCTGCACTGT  450

seq1  CCTGGCCCTGAGAGTAAGGCCCTACCTCCCACCCCAACACACAGCTCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCTGAGAGTAAGGCCCTACCTCCCACCCCAACACACAGCTCGCT  500

seq1  AACTGAGCCATCTTCACGAGCTCTGACCGAATCTTCTGGAGCAGATGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCCATCTTCACGAGCTCTGACCGAATCTTCTGGAGCAGATGAAC  550

seq1  AGTCTCTCAGGCTGTGGGCTCCAACAGACACAAACAAACATTTATAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCAGGCTGTGGGCTCCAACAGACACAAACAAACATTTATAATTC  600

seq1  CTAAGAGAGAGACAGAGACAGAGACAGAGACACGGAGATAGAGAAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAGAGACAGAGACAGAGACAGAGACACGGAGATAGAGAAAGCAA  650

seq1  GGGCCAGCAAAATGGCTCAGACAGCTTCCACCCACATGGTAGGGAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCAAAATGGCTCAGACAGCTTCCACCCACATGGTAGGGAAAGAG  700

seq1  AACTGATTCCTGCAAGCTGTCCTTTGACCTCTATACCAAAGCAAGCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTCCTGCAAGCTGTCCTTTGACCTCTATACCAAAGCAAGCCATG  750

seq1  AGGTGAGTGTGCCTTATCCCTCACAAAATTAATTAGCTTTTTGTTTGTTT  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGTGAGTGTGCCTTATCCCTCACAAAA-TAATTAGCTTTTTGTTTGTTT  799

seq1  GTTTGTTTGAAGAAAGTCCGGCCTTGTAACATCTATTTGGTGGTCTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGAAGAAAGTCCGGCCTTGTAACATCTATTTGGTGGTCTTGGG  849

seq1  CAGCTGAGTGGTCATACAAGTCAAGTCAGGTGATCCTGACAAAATCCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGTGGTCATACAAGTCAAGTCAGGTGATCCTGACAAAATCCAGT  899

seq1  TGCCATAGTTACTGGGAGCTTTGTGGAGGAAATAAAGGAGTATCCAGC-T  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCCATAGTTACTGGGAGCTTTGTGGAGGAAATAAAGGAGTATCCAGCTT  949

seq1  GTCCCTCTCCTTCCTCCCCACTGTTTAACTTTGCCACTAAGATCTTTCAA  999
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  GTCCCTCTCCTTCCTCCCCACTGTTTAACTTTGCCACTAGGATCTTTC-A  998

seq1  TTGTTCATCCAGACTCATCTTACCCCAGCATTCACCAAGGGAACACAAGG  1049
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTTCATCCAGACTCATCTTA-CCCAGCATTCACCAAGGGAACACAAGG  1047

seq1  AGCTAGAGGTGGTTGTCCT-CGCCATCTCAGAAAGAC-TTCTC-TAGCCT  1096
      |||  |||||||||||||| |||||||||  |||||| ||||| |||| |
seq2  AGCAGGAGGTGGTTGTCCTCCGCCATCTCGAAAAGACTTTCTCTTAGCTT  1097

seq1  TAGCTAGTTCCAAACCTAGACCTCAGAATCCTTGCAAAAAC-TGACCAG  1144
      ||||||||| | || ||||| |||||||||||||||||||| |||||||
seq2  TAGCTAGTTTCCAAACTAGA-CTCAGAATCCTTGCAAAAACTTGACCAG  1145