BAC Information

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BAC

Clone NameB6Ng01-098D08
Chromosome12 (Build37)8 (Build37)
Map Location 32,631,616 - 32,631,77653,200,582 - 53,201,206
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098D08.bB6Ng01-098D08.g
ACCDH908363DH908364
length409865
definitionDH908363|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D08, 5' end.DH908364|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,776)(53,200,582 - 53,201,206)
sequence
tttgtttagctatgcaccccatttttgatggggttatttgattttctgga
gtccagcttcttgagttccttgtatatgttagatattagtcccctatcag
atttaggattggtaaaggtattttcccaatctgttggtggcctttttgtc
atattaacagtgtcctttgccttaaagaagaacacagggcccccagtgaa
agagctagagaaagtacccaagagctgaaggggtctgtaaccctataggt
ggaacaacaatatgaactaatcagtaccccccagagctcttgtctctgca
tatgtatcagaagattgcctattctgccatcattgggaagagaggcccct
tggtctaacacactttatatgctccagtacagagaaatgccagggccaag
aagtgggag
gaattcagtgaattggttttgacaacatggtcatttttactgatttgatt
gaatcaatccatgagcattgaaagtttttccatcttcttatatctttctc
aatttcttcatttccctaaaatcttccctgaagtggaaatttctggtttc
tctagagactcggttatgtcttgtgatttttttttctagaaagtgttttc
tcagacgatgtttttgctgaagtagacagatagaaaatgttttgctgagg
aaagacagagtgtttctgggagcagccaggacaaaatggatatactggag
aaaacatgttttggttggaaagggtataattataaccctacagcctatga
gtgatgctgtgtgatgttgatactcagtcccattcttttctggtcatcat
tgtactttgctgacactggtcatcatttgctgtaaattcatatagagaaa
tgcaccaaagaacttctgatgttattctagttgatttttgcagcttctga
tgcctgattgacagagcctagcagtttattctggtttaactgtaattgtt
gattcataaaaggtgtttgcgtgtggatcaagctgctactgttgagtcat
atgaactgaactacctatatcctgacaacacaggtaagattcactccatg
gaattatttctaaacagaatcacttcctcttttgcccttataacctttcc
tttccaatatctctggagggtggtaggctggaagggagtttaaaaacatt
taagagcacatattatttttaaaaatataagcatatatatatatgtatgt
atatatattccacttgattaattacagttaactgaaaataatatatggtt
atatttgaggatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631776
seq2: B6Ng01-098D08.b_259_462 (reverse)

seq1  CTCCCACTTCTTGGCCCTGGCA----------------------------  22
      ||||||||||||||||||||||                            
seq2  CTCCCACTTCTTGGCCCTGGCATTTCTCTGTACTGGAGCATATAAAGTGT  50

seq1  ---AGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
         ||||| | ||||||||||| ||| |||                ||||
seq2  GTTAGACCAAGGGGCCTCTCTTCCCAATGATGGCAGAATAGGCAATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTC-CGGGGGTACTGGTCAGTTC  102
      ||||||||| ||    ||||||| ||||||  |||||||||| | |||||
seq2  TGATACATATGC----AGAGACAAGAGCTCTGGGGGGTACTGATTAGTTC  146

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTA  152
      ||| ||||||||||||||||||||| |||||||||| |||| ||||||||
seq2  ATATTGTTGTTCCACCTATAGGGTTACAGACCCCTTCAGCT-CTTGGGTA  195

seq1  CTTTCTCTA  161
      |||||||||
seq2  CTTTCTCTA  204

seq1: chr8_53200582_53201206
seq2: B6Ng01-098D08.g_69_693

seq1  GAATTCAGTGAATTGGTTTTGACAACATGGTCATTTTTACTGATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAATTGGTTTTGACAACATGGTCATTTTTACTGATTTGATT  50

seq1  GAATCAATCCATGAGCATTGAAAGTTTTTCCATCTTCTTATATCTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATCCATGAGCATTGAAAGTTTTTCCATCTTCTTATATCTTTCTC  100

seq1  AATTTCTTCATTTCCCTAAAATCTTCCCTGAAGTGGAAATTTCTGGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTCATTTCCCTAAAATCTTCCCTGAAGTGGAAATTTCTGGTTTC  150

seq1  TCTAGAGACTCGGTTATGTCTTGTGATTTTTTTTTCTAGAAAGTGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGACTCGGTTATGTCTTGTGATTTTTTTTTCTAGAAAGTGTTTTC  200

seq1  TCAGACGATGTTTTTGCTGAAGTAGACAGATAGAAAATGTTTTGCTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGATGTTTTTGCTGAAGTAGACAGATAGAAAATGTTTTGCTGAGG  250

seq1  AAAGACAGAGTGTTTCTGGGAGCAGCCAGGACAAAATGGATATACTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGAGTGTTTCTGGGAGCAGCCAGGACAAAATGGATATACTGGAG  300

seq1  AAAACATGTTTTGGTTGGAAAGGGTATAATTATAACCCTACAGCCTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTTTTGGTTGGAAAGGGTATAATTATAACCCTACAGCCTATGA  350

seq1  GTGATGCTGTGTGATGTTGATACTCAGTCCCATTCTTTTCTGGTCATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCTGTGTGATGTTGATACTCAGTCCCATTCTTTTCTGGTCATCAT  400

seq1  TGTACTTTGCTGACACTGGTCATCATTTGCTGTAAATTCATATAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTGCTGACACTGGTCATCATTTGCTGTAAATTCATATAGAGAAA  450

seq1  TGCACCAAAGAACTTCTGATGTTATTCTAGTTGATTTTTGCAGCTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAAAGAACTTCTGATGTTATTCTAGTTGATTTTTGCAGCTTCTGA  500

seq1  TGCCTGATTGACAGAGCCTAGCAGTTTATTCTGGTTTAACTGTAATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATTGACAGAGCCTAGCAGTTTATTCTGGTTTAACTGTAATTGTT  550

seq1  GATTCATAAAAGGTGTTTGCGTGTGGATCAAGCTGCTACTGTTGAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATAAAAGGTGTTTGCGTGTGGATCAAGCTGCTACTGTTGAGTCAT  600

seq1  ATGAACTGAACTACCTATATCCTGA  625
      |||||||||||||||||||||||||
seq2  ATGAACTGAACTACCTATATCCTGA  625