BAC Information

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BAC

Clone NameB6Ng01-099B20
Chromosome12 (Build37)
Map Location 119,685,022 - 119,851,434
singlet/doubletdoublet
Overlap geneLOC100042993, LOC668611
Upstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
Downstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099B20.bB6Ng01-099B20.g
ACCDH909003DH909004
length9141,131
definitionDH909003|Mus musculus domesticus DNA, BAC clone: B6Ng01-099B20, 5' end.DH909004|Mus musculus domesticus DNA, BAC clone: B6Ng01-099B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,850,522 - 119,851,434)(119,685,022 - 119,685,844)
sequence
gaattctgacataattgcatagtgcttcatgggaacaagaatgttttcaa
ctttcccacctacatctccaggacctagagcaatgctgggtacatagtac
ttactcgataaatacttgctatgtaaataataagtggagcatgttgcaat
tagcaatcaaagagttgaaatactatggcctttcaggaatatgagggttt
tgtttctctggactattgtctccatagaagtaagaagcaggcagttattt
ggtgtgattactttaaattattctttaaaatactcaacctaacttgactc
cctgtacctgattgttagcattacaaaattaaaggcaagaagtgcctatt
tcagtgatagggccttgcagtaaagaacaaaagtcatagatttagcaaat
cttttccagaatggaatatagcttaaaaggcaaaagttatcatttctgtt
tttatttattcaaacagtaataaggttgaacatgtggcattacatgtacc
aactcttttgttcattttgagttttaataggttgggagttgtttttatta
gtttgtatgagctcttatatgaaatctctgtgtattatcagtgacactta
cctttaatctcagcactaggagggcagaggcaggcagatctctgtgagtt
tggtggtctacagagcaggttttaggacaactagggctacacaaagaaat
caatcaatcaatcttcaaaatgacaataaaaacctataaaaagagccatt
tgactatcatgaagaatgtgtagggcattagcaatctaagacaagatact
ctggaaagaaaattcagttaaccaaatggtcttcttatactgtcagttat
aagagggaaatataacatgagtagttattcagatacaatttaaaaaatgc
tagtggcatcttaa
gaattcattggcatgggaaaggttttcctgaacaggaccctgtcagtaca
agaattaatattaacaacttaataaacgggacttcatgaaactaaaaagt
ttcttttcaggaaaggattccattgttcaataggcaacctacagaatggg
gaaaaaatcttttctaactctatatctgacacagggttagtatctagaat
atacaaagaaataaaaaaaaaaaaaaacccaatcaaccaaccaaccaaac
aaacaaacaaaaaagcctgaatgttgagaaaacaaaccgatttaaaaatg
gggtacagaacttatcagagactccccaaaggatgaaaaataaatggctg
agaaacactttaaaatgttcaacttccttagtcatcaggaaaattaaaat
tactttgagatttcatcttagtccatccaggtggccaagattaataagta
acagcaaatgcttacaaggatgtgggcaacagggaacacttactcattgc
tgataggaacgtgaattggtagaacttctatgaaagtcagcataaaggtt
gctaaaaaatctaaaaatagatctcccacttaccattcttggacatataa
agaaggactctacctcttactacagagatattagttcattcatgtttatt
gccgctttgctgtccatcaattgatgaatggataatggaaatgtggtaca
tttgcacacaatagaatattattcagctgttaagaagatgaaaatatgaa
atttcaggtaaatgaatggaactaggaatatcatcctggataagggtcac
tgaaatccccaatgccaattcccccaactaaattcccatgccaatggatt
tatcagtctcaccgcctgtggaccccaagagctgcaataatcactgtgtt
ttgaagatgtgcccactggtggaatggtggcctgtttcttttttatgtgg
atgctaagctttatgctttagatatctgcatttcatttagatactcacaa
aggttagtagctgttagggacagggggagagtagaggatcttccaagggt
ggaaaattagaatatagtttatataagggataaagggccaatcgaaagga
gtgatttaagtgggttggtggggcgtgtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119850522_119851434
seq2: B6Ng01-099B20.b_48_961 (reverse)

seq1  TTAAGATGCCACTAGCATTTTTTAAATTGTATCTGAATAACTACTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGCCACTAGCATTTTTTAAATTGTATCTGAATAACTACTCATGT  50

seq1  TATATTTCCCTCTTATAACTGACAGTATAAGAAGACCATTTGGTTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCCTCTTATAACTGACAGTATAAGAAGACCATTTGGTTAACTG  100

seq1  AATTTTCTTTCCAGAGTATCTTGTCTTAGATTGCTAATGCCCTACACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTTCCAGAGTATCTTGTCTTAGATTGCTAATGCCCTACACATT  150

seq1  CTTCATGATAGTC-AATGGCTCTTTTTATAGGTTTTTATTGTCATTTTGA  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTCATGATAGTCAAATGGCTCTTTTTATAGGTTTTTATTGTCATTTTGA  200

seq1  AGATTGATTGATTGATTTCTTTGTGTAGCCCTAGTTGTCCTAAAACCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGATTGATTGATTTCTTTGTGTAGCCCTAGTTGTCCTAAAACCTGC  250

seq1  TCTGTAGACCACCAAACTCACAGAGATCTGCCTGCCTCTGCCCTCCTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCACCAAACTCACAGAGATCTGCCTGCCTCTGCCCTCCTAGT  300

seq1  GCTGAGATTAAAGGTAAGTGTCACTGATAATACACAGAGATTTCATATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATTAAAGGTAAGTGTCACTGATAATACACAGAGATTTCATATAA  350

seq1  GAGCTCATACAAACTAATAAAAACAACTCCCAACCTATTAAAACTCAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATACAAACTAATAAAAACAACTCCCAACCTATTAAAACTCAAAA  400

seq1  TGAACAAAAGAGTTGGTACATGTAATGCCACATGTTCAACCTTATTACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAAGAGTTGGTACATGTAATGCCACATGTTCAACCTTATTACTG  450

seq1  TTTGAATAAATAAAAACAGAAATGATAACTTTTGCCTTTTAAGCTATATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAAATAAAAACAGAAATGATAACTTTTGCCTTTTAAGCTATATT  500

seq1  CCATTCTGGAAAAGATTTGCTAAATCTATGACTTTTGTTCTTTACTGCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGGAAAAGATTTGCTAAATCTATGACTTTTGTTCTTTACTGCAA  550

seq1  GGCCCTATCACTGAAATAGGCACTTCTTGCCTTTAATTTTGTAATGCTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTATCACTGAAATAGGCACTTCTTGCCTTTAATTTTGTAATGCTAA  600

seq1  CAATCAGGTACAGGGAGTCAAGTTAGGTTGAGTATTTTAAAGAATAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGTACAGGGAGTCAAGTTAGGTTGAGTATTTTAAAGAATAATTT  650

seq1  AAAGTAATCACACCAAATAACTGCCTGCTTCTTACTTCTATGGAGACAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATCACACCAAATAACTGCCTGCTTCTTACTTCTATGGAGACAAT  700

seq1  AGTCCAGAGAAACAAAACCCTCATATTCCTGAAAGGCCATAGTATTTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAGAAACAAAACCCTCATATTCCTGAAAGGCCATAGTATTTCAA  750

seq1  CTCTTTGATTGCTAATTGCAACATGCTCCACTTATTATTTACATAGCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGATTGCTAATTGCAACATGCTCCACTTATTATTTACATAGCAAG  800

seq1  TATTTATCGAGTAAGTACTATGTACCCAGCATTGCTCTAGGTCCTGGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCGAGTAAGTACTATGTACCCAGCATTGCTCTAGGTCCTGGAGA  850

seq1  TGTAGGTGGGAAAGTTGAAAACATTCTTGTTCCCATGAAGCACTATGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGGGAAAGTTGAAAACATTCTTGTTCCCATGAAGCACTATGCAA  900

seq1  TTATGTCAGAATTC  913
      ||||||||||||||
seq2  TTATGTCAGAATTC  914

seq1: chr12_119685022_119685844
seq2: B6Ng01-099B20.g_378_1199

seq1  AACTTATCAGAGACTCCCCAAAGGATGAAAAATAAATGGCTGAGAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATCAGAGACTCCCCAAAGGATGAAAAATAAATGGCTGAGAAACAC  50

seq1  TTTAAAATGTTCAACTTCCTTAGTCATCAGGAAAATTAAAATTACTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTTCAACTTCCTTAGTCATCAGGAAAATTAAAATTACTTTGA  100

seq1  GATTTCATCTTAGTCCATCCAGGTGGCCAAGATTAATAAGTAACAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATCTTAGTCCATCCAGGTGGCCAAGATTAATAAGTAACAGCAAA  150

seq1  TGCTTACAAGGATGTGGGCAACAGGGAACACTTACTCATTGCTGATAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAAGGATGTGGGCAACAGGGAACACTTACTCATTGCTGATAGGA  200

seq1  ACGTGAATTGGTAGAACTTCTATGAAAGTCAGCATAAAGGTTGCTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAATTGGTAGAACTTCTATGAAAGTCAGCATAAAGGTTGCTAAAAA  250

seq1  ATCTAAAAATAGATCTCCCACTTACCATTCTTGGACATATAAAGAAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAATAGATCTCCCACTTACCATTCTTGGACATATAAAGAAGGAC  300

seq1  TCTACCTCTTACTACAGAGATATTAGTTCATTCATGTTTATTGCCGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCTTACTACAGAGATATTAGTTCATTCATGTTTATTGCCGCTTT  350

seq1  GCTGTCCATCAATTGATGAATGGATAATGGAAATGTGGTACATTTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCATCAATTGATGAATGGATAATGGAAATGTGGTACATTTGCACA  400

seq1  CAATAGAATATTATTCAGCTGTTAAGAAGATGAAAATATGAAATTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAATATTATTCAGCTGTTAAGAAGATGAAAATATGAAATTTCAGG  450

seq1  TAAATGAATGGAACTAGGAATATCATCCTGGATAA-GGTCACTGAAATCC  499
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAATGAATGGAACTAGGAATATCATCCTGGATAAGGGTCACTGAAATCC  500

seq1  CCAATGCCAATTCCCCCAACTAAATTCCCATGCCAATGGATTTATCAGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCAATTCCCCCAACTAAATTCCCATGCCAATGGATTTATCAGTC  550

seq1  TCACCGCCTGTGGACCCCAAGAGCTGCAATAATCACTGTGTTTTGAAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGCCTGTGGACCCCAAGAGCTGCAATAATCACTGTGTTTTGAAGAT  600

seq1  GTGCCCACTGGTGGAATGGTGGCCTGTTTCTTTTTTATGTGGATGCTAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACTGGTGGAATGGTGGCCTGTTTCTTTTTTATGTGGATGCTAAG  650

seq1  CTTTATGCTTTAGATATCTGCATTTCATTTAGAATACTCACAAAGGTTAG  699
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  CTTTATGCTTTAGATATCTGCATTTCATTTAG-ATACTCACAAAGGTTA-  698

seq1  GTAGCTTGTTAGGGACCAGGGGAGAGTAGAGGATCTTCCAAGGGTGGGAC  749
      ||||| ||||||||||  ||||||||||||||||||||||||||||| | 
seq2  GTAGC-TGTTAGGGACAGGGGGAGAGTAGAGGATCTTCCAAGGGTGGAAA  747

seq1  AATAGAATATAGTTTTATA-AAGGGATAAAGGGGCAATCAGAACAGGAGT  798
      | |||||||||| |||||| ||||||||||||| ||||| ||| ||||||
seq2  ATTAGAATATAG-TTTATATAAGGGATAAAGGGCCAATC-GAA-AGGAGT  794

seq1  GATTTAAATGG---GGTGGGGGGTGTGC  823
      ||||||| |||   ||||||| ||||||
seq2  GATTTAAGTGGGTTGGTGGGGCGTGTGC  822