BAC Information

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BAC

Clone NameB6Ng01-099E02
Chromosome12 (Build37)
Map Location 81,244,195 - 81,352,905
singlet/doubletdoublet
Overlap geneActn1
Upstream geneArg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1
Downstream geneWdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099E02.bB6Ng01-099E02.g
ACCDH909100DH909101
length953844
definitionDH909100|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E02, 5' end.DH909101|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,244,195 - 81,245,145)(81,352,063 - 81,352,905)
sequence
gaattctgtgcctggtgttgcaaatctggtcaaaagctcatagcttagaa
tgccataggcccccccaaaaaagagaatcttttattaattgccttgctaa
gcatataccaaattgccctctaaatatttgtttttatatagagagactag
tgctgccctcaacctcggccagaaagtcttctttcagcagtgctcagcag
ttgggacagactcattaatggtcaaagtgctaaggctaagcgactgttta
gtactcagccctaaatgggacatctgtatcacaaacgcacactcacacac
cacgcacacacacacatacacacacatagacacgcatacactcacacaca
catgaactcacacacactcacacacacaacacgataagcgcatacaacaa
tgaacacacacgtgcgtacacaggtgtacaatttaggacatattcaaatt
gtactcgatgggggggaaataacccacaagtggtcatgaagcagggagag
gatctgccggggatgttccggggagactgagggcagggagtggggtggtt
atggtcaagatgtattgtttacacatatggaattgtcaccgagtgagtga
aaaatacctcatttagatcattctgacaacaaggcacttgtagctattca
gcacagccccagcctttgtaccttggctctctcctgataataatgacggt
gtcaatgagatggtgtcaacgagagtcacctacttcatctatacagcatt
acttatttccccaaatgaaagggaaactctctttggagcagagacaaatg
cgcacaccttgggtttcaactcagccgcaatctcaaattcgtgtcgtttt
ccgggcacctgcttctgctgccaagattctacaagagagactctctccgg
tcagaggggacatctgccacttgtaacctttccccatagttactggcgta
ctg
gaattcaggaacacagagtaatgtgctcccaggcccacagaggaaggggt
ggacatgaaggcccaggtgttccattttggtttgaaatgtttcataagtg
aaaggtacttaaaagggaaatgtaaacactgtccactttctggggaggga
agagaagattctcgagggtggattggccaggagagctgtctgttttgcat
cagtcaaccagctagtctttattaacagtaagtaagtaagaaagaaagac
caacagctcacagtgattaaagttaactgactgagatgacctcagtctgc
acgcctcttcaaggaaggcgctggtagtctgttttgctagatgggaaact
gagacacagagaagtcgcttgcccaggagctgaccggctaataagctgag
ttatgcacaaagccaggcagattaacttcagaattctgacttttaaccat
cagtacagacacaccctctgctgtgaaggggcttatgatttcactgagac
tggagtcttaaatgtgagtgaacaatgcctcggggtggtatgtaatcaag
ggctcgttttatgattcatggtttttcacatttatactcttacattaacc
gtgatgtgatttcttgccactaatgtcggtgagcaaacgtgcgagggctg
atctccattttagggtagagaaaatgagactcagaaaagttaggggactt
tagccaaggcctggacacaacttgaaatgtttagggggagttttagccaa
agtctctggagggactcttagcctgacagatcctggatgacacacagaca
tttctgaagttacttttcttagttggagagggagggggggaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81244195_81245145
seq2: B6Ng01-099E02.b_47_999

seq1  GAATTCTGTGCCTGGTGTTGCAAATCTGGTCAAAAGCTCATAGCTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCTGGTGTTGCAAATCTGGTCAAAAGCTCATAGCTTAGAA  50

seq1  TGCCATAGGCCCCCCCAAAAAAGAGAATCTTTTATTAATTGCCTTGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGGCCCCCCCAAAAAAGAGAATCTTTTATTAATTGCCTTGCTAA  100

seq1  GCATATACCAAATTGCCCTCTAAATATTTGTTTTTATATAGAGAGACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACCAAATTGCCCTCTAAATATTTGTTTTTATATAGAGAGACTAG  150

seq1  TGCTGCCCTCAACCTCGGCCAGAAAGTCTTCTTTCAGCAGTGCTCAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCTCAACCTCGGCCAGAAAGTCTTCTTTCAGCAGTGCTCAGCAG  200

seq1  TTGGGACAGACTCATTAATGGTCAAAGTGCTAAGGCTAAGCGACTGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACAGACTCATTAATGGTCAAAGTGCTAAGGCTAAGCGACTGTTTA  250

seq1  GTACTCAGCCCTAAATGGGACATCTGTATCACAAACGCACACTCACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAGCCCTAAATGGGACATCTGTATCACAAACGCACACTCACACAC  300

seq1  CACGCACACACACACATACACACACATAGACACGCATACACTCACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACACACACACATACACACACATAGACACGCATACACTCACACACA  350

seq1  CATGAACTCACACACACTCACACACACAACACGATAAGCGCATACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTCACACACACTCACACACACAACACGATAAGCGCATACAACAA  400

seq1  TGAACACACACGTGCGTACACAGGTGTACAATTTAGGACATATTCAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACACACGTGCGTACACAGGTGTACAATTTAGGACATATTCAAATT  450

seq1  GTACTCGATGGGGGGGAAATAACCCACAAGTGGTCATGAAGCAGGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCGATGGGGGGGAAATAACCCACAAGTGGTCATGAAGCAGGGAGAG  500

seq1  GATCTGCCGGGGATGTTCCGGGGAGACTGAGGGCAGGGAGTGGGGTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCGGGGATGTTCCGGGGAGACTGAGGGCAGGGAGTGGGGTGGTT  550

seq1  ATGGTCAAGATGTATTGTTTACACATATGGAATTGTCACCGAGTGAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAAGATGTATTGTTTACACATATGGAATTGTCACCGAGTGAGTGA  600

seq1  AAAATACCTCA-TTAGATCATTCTGACAACAAGGCACTTGTAGCTATTCA  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCTCATTTAGATCATTCTGACAACAAGGCACTTGTAGCTATTCA  650

seq1  GCACAGCCCCAGCCTTTGTACCTTGGCTCTCTCCTGATAATAATGACGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCCCAGCCTTTGTACCTTGGCTCTCTCCTGATAATAATGACGGT  700

seq1  GTCAATGAGATGGTGTCAACGAGAGTCACCTACTTCATCTATACAGCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGAGATGGTGTCAACGAGAGTCACCTACTTCATCTATACAGCATT  750

seq1  AC-TACTTCCCCAAATGAAAGGGAAACTCTCTTTGGAGCAGAGACAAATG  798
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTCCCCAAATGAAAGGGAAACTCTCTTTGGAGCAGAGACAAATG  800

seq1  CGCACACCTTGGGTTTCAACTCAGCCGCAATCTCAAATTCGTGTCGTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACCTTGGGTTTCAACTCAGCCGCAATCTCAAATTCGTGTCGTTTT  850

seq1  CCGGGCACCTGCTTCTGCTGCCAAGACTCTACAAGAGAGACTCTCTCCGG  898
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCGGGCACCTGCTTCTGCTGCCAAGATTCTACAAGAGAGACTCTCTCCGG  900

seq1  TCAGAGGGGACATCTGCCTCTTGTCACCTGTCCCCATAGTTACTGTCGTA  948
      |||||||||||||||||| ||||| |||| ||||||||||||||| ||||
seq2  TCAGAGGGGACATCTGCCACTTGTAACCTTTCCCCATAGTTACTGGCGTA  950

seq1  CTG  951
      |||
seq2  CTG  953

seq1: chr12_81352063_81352905
seq2: B6Ng01-099E02.g_70_913 (reverse)

seq1  CATT-CCCCCCTCCCTCTCCAACTAAGAAAAGTAACTTCAGAAATGTCTG  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCCCCTCCCTCTCCAACTAAGAAAAGTAACTTCAGAAATGTCTG  50

seq1  TGTGTCATCCAGGATCTGTCAGGCTAAGAGTCCCTCCAGAGACTTTGGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATCCAGGATCTGTCAGGCTAAGAGTCCCTCCAGAGACTTTGGCT  100

seq1  AAAACTCCCCCTAAACATTTCAAGTTGTGTCCAGGCCTTGGCTAAAGTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCCCCTAAACATTTCAAGTTGTGTCCAGGCCTTGGCTAAAGTCC  150

seq1  CCTAACTTTTCTGAGTCTCATTTTCTCTACCCTAAAATGGAGATCAGCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTTTCTGAGTCTCATTTTCTCTACCCTAAAATGGAGATCAGCCC  200

seq1  TCGCACGTTTGCTCACCGACATTAGTGGCAAGAAATCACATCACGGTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACGTTTGCTCACCGACATTAGTGGCAAGAAATCACATCACGGTTAA  250

seq1  TGTAAGAGTATAAATGTGAAAAACCATGAATCATAAAACGAGCCCTTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGTATAAATGTGAAAAACCATGAATCATAAAACGAGCCCTTGAT  300

seq1  TACATACCACCCCGAGGCATTGTTCACTCACATTTAAGACTCCAGTCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACCACCCCGAGGCATTGTTCACTCACATTTAAGACTCCAGTCTCA  350

seq1  GTGAAATCATAAGCCCCTTCACAGCAGAGGGTGTGTCTGTACTGATGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCATAAGCCCCTTCACAGCAGAGGGTGTGTCTGTACTGATGGTT  400

seq1  AAAAGTCAGAATTCTGAAGTTAATCTGCCTGGCTTTGTGCATAACTCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAGAATTCTGAAGTTAATCTGCCTGGCTTTGTGCATAACTCAGC  450

seq1  TTATTAGCCGGTCAGCTCCTGGGCAAGCGACTTCTCTGTGTCTCAGTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGCCGGTCAGCTCCTGGGCAAGCGACTTCTCTGTGTCTCAGTTTC  500

seq1  CCATCTAGCAAAACAGACTACCAGCGCCTTCCTTGAAGAGGCGTGCAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGCAAAACAGACTACCAGCGCCTTCCTTGAAGAGGCGTGCAGAC  550

seq1  TGAGGTCATCTCAGTCAGTTAACTTTAATCACTGTGAGCTGTTGGTCTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCATCTCAGTCAGTTAACTTTAATCACTGTGAGCTGTTGGTCTTT  600

seq1  CTTTCTTACTTACTTACTGTTAATAAAGACTAGCTGGTTGACTGATGCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTACTTACTTACTGTTAATAAAGACTAGCTGGTTGACTGATGCAA  650

seq1  AACAGACAGCTCTCCTGGCCAATCCACCCTCGAGAATCTTCTCTTCCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGCTCTCCTGGCCAATCCACCCTCGAGAATCTTCTCTTCCCTC  700

seq1  CCCAGAAAGTGGACAGTGTTTACATTTCCCTTTTAAGTACCTTTCACTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAGTGGACAGTGTTTACATTTCCCTTTTAAGTACCTTTCACTTA  750

seq1  TGAAACATTTCAAACCAAAATGGAACACCTGGGCCTTCATGTCCACCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATTTCAAACCAAAATGGAACACCTGGGCCTTCATGTCCACCCCT  800

seq1  TCCTCTGTGGGCCTGGGAGCACATTACTCTGTGTTCCTGAATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTGGGCCTGGGAGCACATTACTCTGTGTTCCTGAATTC  844