BAC Information

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BAC

Clone NameB6Ng01-100C08
Chromosome12 (Build37)17 (Build37)
Map Location 62,570,107 - 62,570,2413,653,600 - 3,654,081
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
Downstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C08.bB6Ng01-100C08.g
ACCDH909730DH909731
length600878
definitionDH909730|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C08, 5' end.DH909731|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,570,107 - 62,570,241)(3,653,600 - 3,654,081)
sequence
gaattcacagcattgatgattatattttcgtgttttgaacagctcatatc
tcagtgctttcagagatttctgaaagttttcaaagatgattctaactagt
gacttaataacaatcttggtaagtgtcatctcgctttactctacagccac
agaatcccatgagatcatgagtagaaaaatcatgttatatgaactgagca
ttgcagctgtctgtggatgtatggaaagtatcacaaaaagaatgttccca
ataaactttcctttaatacccatgaaaagaaattctgtagatagaaaaaa
actgatatatatttgaaactcttacccatataagtataaggaatagggtg
aatggaaaaaaaaaacttttgctcatttttatataaatgaataccattta
actcaaaataataaaaatatattatattaaaatatgctatatatcttaca
tgtctttatcttgtctaaggtatatgcttacatataagtgaatggattaa
aataataatataataaaaacagagaggccaattggtcgtgcaaactttat
atgcctcaatacaggggaacaccagggccaagaagtgggagtgggtgggt

gaattcctgattttacttagttttaggaagttagaataattgatagaatg
tttaagaagatggcttgacttgtttaaccagaaatatataataaaagtta
gaatatagagaagaatgagccttgtagattagtgcaggctatataggtta
caaaaggagtacagcgcgcttccatgcattataagcatgtaattgtactt
ggaagagaaaaaataggcttgggacaacataatgatcaaaggaaacactg
attctaggttgggtctgagttcctggatcttgtgatctagggatgtggcc
acaggtttcagtgtgcgctataaaaagtcaaggttatgaataaagattaa
ataattatattataaatataagaataaagaacagattattagccagttta
gctggctaagtttcctaagcataggaaaaacttgctactatagacgggct
tgctaacaatttgtgaatcaatgacaaatgaattattgctttggggtttc
aatgaacttatggagagaaagataaattggaaatgtttagtaaggtatga
gtttcaaaagaggaatacgtaatcaataatcctattgtaatttcatttgt
gtaatgattttaatctgtttttgaagaatttttatggtgattgtttttag
tgaatgtaataacttgtggctatgaggtaatctttttcctatgaagagaa
cttaatcttagatgatataaaaaggctaagagaaaattcagttgctggga
acagcttgtttggagctttgtctcatctaatatatctctgtgtgtgtgtg
tttgtgtgtgtgtgtgtgcagttttttgagcttgcattgcttcatcctct
ctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62570107_62570241
seq2: B6Ng01-100C08.b_395_643 (reverse)

seq1  ACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCAT  50
      |||||||||||||||||| |||||||||| ||||||||||| || |||||
seq2  ACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTATTGAGGCAT  50

seq1  ATAAAGTTTGCAAGACCAATGGGCATTTGTGTGCATGTTTGTTTGTTTTT  100
      |||||||||||| ||||||| ||| | | |||   | ||  | | || ||
seq2  ATAAAGTTTGCACGACCAATTGGCCTCTCTGT---TTTTATTATATTATT  97

seq1  GGTTTGGGGGTTTGTTTTGGTTTTTTTTTTTCCAT---------------  135
        |||       |   ||   || | | |   |||               
seq2  ATTTT-----AATCCATTCACTTATATGTAAGCATATACCTTAGACAAGA  142

seq1  --------------------------------------------------  135
                                                        
seq2  TAAAGACATGTAAGATATATAGCATATTTTAATATAATATATTTTTATTA  192

seq1  --------------------------------------------------  135
                                                        
seq2  TTTTGAGTTAAATGGTATTCATTTATATAAAAATGAGCAAAAGTTTTTTT  242

seq1  -------  135
             
seq2  TTTCCAT  249

seq1: chr17_3653600_3654081
seq2: B6Ng01-100C08.g_856_949 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGAGAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGGAACCTCAGCCCTAATTGGGAATATCTTCATCAAATCCCTTTCTTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGCTCAGGAAAATCTACAGAAGAGATGAGACAAAGAGAGTATTAGAGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGGGAATGGAGAATACAGGCCCTCTCATGGAGACTGTAGTTTTCTAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TATTATATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTATTTTATTTTATTTTATTTTATTATTATCTCTTAGAAGCCTAATGAGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  GACAGAAAGGGAGGAGGTCTGCATAGTACAGAAGGTGGAGAGGAACTGGG  350
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAGTAGAGGGAGAGGAAACCACAGTCACAATATATTTTCAATAAAAGC  400
                                                   | || 
seq2  ---------------------------------------------AGAGA  5

seq1  AAAAAATGTAGTGGGGGAGAGAGAGAGACAGACACA---CACACACACAC  447
       | | |   || | | |||||||||||   ||  ||   ||  | || | 
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGGATGAAGCAATGCAAGCTCAAAA  55

seq1  A----CACACACACACACACACACACACACACACAGAGA  482
      |    |||||||||||||||| |||||||||||||||||
seq2  AACTGCACACACACACACACAAACACACACACACAGAGA  94