BAC Information

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BAC

Clone NameB6Ng01-100I15
Chromosome12 (Build37)
Map Location 27,656,836 - 27,816,562
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100I15.bB6Ng01-100I15.g
ACCDH910011DH910012
length1,0721,081
definitionDH910011|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I15, 5' end.DH910012|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,815,485 - 27,816,562)(27,656,836 - 27,657,913)
sequence
gaattcctctgactagattaaaaatgatcacagggaaggcttgttggcaa
acggagcactcttgtttctagagctgagactgagcatgtaggtggattca
cagtggtgaggagatccctggagatcacagagttctcaagggaggacaca
accacctctgagcaattgctagtatagcaagaactatagattgaggcaaa
tctgggcttatattcaacattgcctgttttgaacttcatgacttttgaaa
caactgttcagtttttattttgatatttagttttcttaaaaaattgccag
caaacaaaatactcctcaaggtgtactttcaggatttactaaatcagttg
atcaagtaaatcattaagtgaaagaatctctattcatattcccaaaaact
gaagactgccctttctttgagagagcaagtatcatatagaagtttagcaa
cacacaaatgaaaatatagcccattatgaaattagtttgttgttatattt
tgtttgaaatcaacataaaatcaatgtttttctaccattaagaactttga
aagaagccctttggaaaataattgtaatctattaactttacccacaactt
gtgatagacaagatgtctcaaaactctacttctgaaacttgtaatagcat
ttctgtaggaaaatatttcatagctgcatagctgggttatcaggttagtt
aggaacataagtagcagccaaagatgtgagcacatattggattgactcag
aaataaggcttggtggaatgctttccagtttatttgtcataggggccaga
gttgagactttgaatctacttgagttctacataaaaccttctctcacctt
tttttcttggtgtgaatcaggaggaggcttaacccatggtgagaattctg
ctaattctgccagggagaacttctgtgagtttggatcatggaaaagaata
cttggctgggtcacttaacttggggttaaataaaactagatgagaagctt
tctgctttcccaaatgatgccatgatgacgctgactcataaaaggcactc
actcgaagagtgaatcaagata
gaattctcacttacaaaacatcttttccaggcttcttcatcctcctttta
ccattgtattattgatctttatatttactacacattagacatagactaga
ggatatatatatatatatatatatatatatatatatatatataatttaca
taagccttatgtataaaatatatacctattttagatatagttaatataaa
ttatccataggatttatccatagaagatagaattcttctctgatgcacta
cactcatgatgtgtaagggagtctcaaataagtcaggtcaataatatcca
aatgcattctacccatgtataaaataaccaaagaacaaataaaagtatgt
tttagaatcatttgtagtttgcttcctatgagtctattgcaaataaaatg
taggcccaggatcattttcaagaaccttaagactgcaggtcggagaacac
cctaaggaccaggcatcccctcttcctgctcctcctctcagattacagcc
tcccacatggccagcacttagccgaagaaccaaaagaaaatcccaagcat
tcatcagaattttctgatgagaaagcttacaaagttcagggaggaataca
agatgaactgcaagtcacttgtgctctgtacagccattgtgagaagctca
catctgccctggaagcagaggtagaccatgacctgcagctataaacctgg
gagcctaaccctacctctgtctgtggagcttgcaggcacaaagaaacctt
attctttgattgattctctagcaggtcaccttcctcctgaccatcggtaa
ccagagctgcctcaattataccccatcaagaagaacagataacaggaaag
ccagtttcatggagacggctgtattttaagagcacttcctgtcatgaggc
tgacttttgatctccggatggtgcaggtcagtgagttgaaagccaaggca
tgcatgcatcactgtctctggctgctgaaaacctggttgtgcatgaacta
gagtcttcagggtttctgcttgaatcttatctgagaggcccactctttcc
ctcaataccagtttgggcagaatttgttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27815485_27816562
seq2: B6Ng01-100I15.b_43_1114 (reverse)

seq1  TATCTTGATTCACTCTCTGAGTGGGTGGCCTTTTATGAGTCAGCGTCATC  50
      ||||||||||||||||  ||||| || |||||||||||||||||||||||
seq2  TATCTTGATTCACTCTTCGAGTGAGT-GCCTTTTATGAGTCAGCGTCATC  49

seq1  ATTGCAATCATTTTGGGAAAGCAGAAAGCCTTCTCATCTAGTTTTATTTA  100
      || || |||| ||||||||||||||||| |||||||||||||||||||| 
seq2  ATGGC-ATCA-TTTGGGAAAGCAGAAAG-CTTCTCATCTAGTTTTATTT-  95

seq1  AACCCCAAGTTAAGTGGACCCAGCCAAGTATTCTTTTCCATGATCCAAAC  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACCCCAAGTTAAGT-GACCCAGCCAAGTATTCTTTTCCATGATCCAAAC  144

seq1  TCACAGAAGTTCTCCCTGGCAGAATTAGCAGAATTCTCACCATGGGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAGTTCTCCCTGGCAGAATTAGCAGAATTCTCACCATGGGTTAA  194

seq1  GCCTCCTCCTGATTCACACCAAGAAAAAAAGGTGAGAGAAGGTTTTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCCTGATTCACACCAAGAAAAAAAGGTGAGAGAAGGTTTTATGT  244

seq1  AGAACTCAAGTAGATTCAAAGTCTCAACTCTGGCCCCTATGACAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGTAGATTCAAAGTCTCAACTCTGGCCCCTATGACAAATAAA  294

seq1  CTGGAAAGCATTCCACCAAGCCTTATTTCTGAGTCAATCCAATATGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGCATTCCACCAAGCCTTATTTCTGAGTCAATCCAATATGTGCT  344

seq1  CACATCTTTGGCTGCTACTTATGTTCCTAACTAACCTGATAACCCAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTTGGCTGCTACTTATGTTCCTAACTAACCTGATAACCCAGCTA  394

seq1  TGCAGCTATGAAATATTTTCCTACAGAAATGCTATTACAAGTTTCAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTATGAAATATTTTCCTACAGAAATGCTATTACAAGTTTCAGAAG  444

seq1  TAGAGTTTTGAGACATCTTGTCTATCACAAGTTGTGGGTAAAGTTAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTTGAGACATCTTGTCTATCACAAGTTGTGGGTAAAGTTAATAG  494

seq1  ATTACAATTATTTTCCAAAGGGCTTCTTTCAAAGTTCTTAATGGTAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATTATTTTCCAAAGGGCTTCTTTCAAAGTTCTTAATGGTAGAAA  544

seq1  AACATTGATTTTATGTTGATTTCAAACAAAATATAACAACAAACTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGATTTTATGTTGATTTCAAACAAAATATAACAACAAACTAATTT  594

seq1  CATAATGGGCTATATTTTCATTTGTGTGTTGCTAAACTTCTATATGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGGCTATATTTTCATTTGTGTGTTGCTAAACTTCTATATGATAC  644

seq1  TTGCTCTCTCAAAGAAAGGGCAGTCTTCAGTTTTTGGGAATATGAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTCAAAGAAAGGGCAGTCTTCAGTTTTTGGGAATATGAATAGA  694

seq1  GATTCTTTCACTTAATGATTTACTTGATCAACTGATTTAGTAAATCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCACTTAATGATTTACTTGATCAACTGATTTAGTAAATCCTGA  744

seq1  AAGTACACCTTGAGGAGTATTTTGTTTGCTGGCAATTTTTTAAGAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACCTTGAGGAGTATTTTGTTTGCTGGCAATTTTTTAAGAAAACT  794

seq1  AAATATCAAAATAAAAACTGAACAGTTGTTTCAAAAGTCATGAAGTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAAATAAAAACTGAACAGTTGTTTCAAAAGTCATGAAGTTCAA  844

seq1  AACAGGCAATGTTGAATATAAGCCCAGATTTGCCTCAATCTATAGTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCAATGTTGAATATAAGCCCAGATTTGCCTCAATCTATAGTTCTT  894

seq1  GCTATACTAGCAATTGCTCAGAGGTGGTTGTGTCCTCCCTTGAGAACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTAGCAATTGCTCAGAGGTGGTTGTGTCCTCCCTTGAGAACTCT  944

seq1  GTGATCTCCAGGGATCTCCTCACCACTGTGAATCCACCTACATGCTCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTCCAGGGATCTCCTCACCACTGTGAATCCACCTACATGCTCAGT  994

seq1  CTCAGCTCTAGAAACAAGAGTGCTCCGTTTGCCAACAAGCCTTCCCTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTAGAAACAAGAGTGCTCCGTTTGCCAACAAGCCTTCCCTGTG  1044

seq1  ATCATTTTTAATCTAGTCAGAGGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  ATCATTTTTAATCTAGTCAGAGGAATTC  1072

seq1: chr12_27656836_27657913
seq2: B6Ng01-100I15.g_67_1147

seq1  GAATTCTCACTTACAAAACATCTTTTCCAGGCTTCTTCATCCTCCTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTACAAAACATCTTTTCCAGGCTTCTTCATCCTCCTTTTA  50

seq1  CCATTGTATTATTGATCTTTATATTTACTACACATTAGACATAGACTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATTATTGATCTTTATATTTACTACACATTAGACATAGACTAGA  100

seq1  GG--ATATATATATATATATATATATATATATATATATATATAATTTACA  148
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATATATATATATATATATATATATATATATATATATAATTTACA  150

seq1  TAAGCCTTATGTATAAAATATATACCTATTTTAGATATAGTTAATATAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTATGTATAAAATATATACCTATTTTAGATATAGTTAATATAAA  200

seq1  TTATCCATAGGATTTATCCATAGAAGATAGAATTCTTCTCTGATGCACTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATAGGATTTATCCATAGAAGATAGAATTCTTCTCTGATGCACTA  250

seq1  CACTCATGATGTGTAAGGGAGTCTCAAATAAGTCAGGTCAATAATATCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGATGTGTAAGGGAGTCTCAAATAAGTCAGGTCAATAATATCCA  300

seq1  AATGCATTCTACCCATGTATAAAATAACCAAAGAACAAATAAAAGTATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTCTACCCATGTATAAAATAACCAAAGAACAAATAAAAGTATGT  350

seq1  TTTAGAATCATTTGTAGTTTGCTTCCTATGAGTCTATTGCAAATAAAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATCATTTGTAGTTTGCTTCCTATGAGTCTATTGCAAATAAAATG  400

seq1  TAGGCCCAGGATCATTTTCAAGAACCTTAAGACTGCAGGTCGGAGAACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCAGGATCATTTTCAAGAACCTTAAGACTGCAGGTCGGAGAACAC  450

seq1  CCTAAGGACCAGGCATCCCCTCTTCCTGCTCCTCCTCTCAGATTACAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGACCAGGCATCCCCTCTTCCTGCTCCTCCTCTCAGATTACAGCC  500

seq1  TCCCACATGGCCAGCACTTAGCCGAAGAACCAAAAGAAAATCCCAAGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATGGCCAGCACTTAGCCGAAGAACCAAAAGAAAATCCCAAGCAT  550

seq1  TCATCAGAATTTTCTGATGAGAAAGCTTACAAAGTTCAGGGAGGAATACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAATTTTCTGATGAGAAAGCTTACAAAGTTCAGGGAGGAATACA  600

seq1  AGATGAACTGCAAGTCACTTGTGCTCTGTACAGCCATTGTGAGAAGCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACTGCAAGTCACTTGTGCTCTGTACAGCCATTGTGAGAAGCTCA  650

seq1  CATCTGCCCTGGAAGCAGAGGTAGACCATGACCTGCAGCTATAAACCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCCTGGAAGCAGAGGTAGACCATGACCTGCAGCTATAAACCTGG  700

seq1  GAGCCTAACCCTACCTCTGTCTGTGGAGCTTGCAGGCACAAAGAAACCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAACCCTACCTCTGTCTGTGGAGCTTGCAGGCACAAAGAAACCTT  750

seq1  ATTCTTTGATTGATTCTCTAGCAGGTCACCTTCCTCCTGACCATCGGTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGATTGATTCTCTAGCAGGTCACCTTCCTCCTGACCATCGGTAA  800

seq1  CCAGAGCTGCCTCAATTATACCCCATCAAGAAGAACAGATAACAGGAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTGCCTCAATTATACCCCATCAAGAAGAACAGATAACAGGAAAG  850

seq1  CCAGGTTCATGGAGACGGCTGTAATTTTAGAAGCACTTCCTGTCATGAGG  898
      |||| ||||||||||||||||| ||||||  |||||||||||||||||||
seq2  CCAGTTTCATGGAGACGGCTGT-ATTTTAAGAGCACTTCCTGTCATGAGG  899

seq1  CTGACTTTTGATCTCCGGATGGTGCAGGTCAGTGAGTTG-AAGCCAAGGC  947
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGACTTTTGATCTCCGGATGGTGCAGGTCAGTGAGTTGAAAGCCAAGGC  949

seq1  ATGCATGCATCACTGTCTCTGGCTGCTGAGAACCTGGTGTGTGCATG-AC  996
      ||||||||||||||||||||||||||||| |||||||| |||||||| ||
seq2  ATGCATGCATCACTGTCTCTGGCTGCTGAAAACCTGGT-TGTGCATGAAC  998

seq1  TAGAGTCCTACAGGG-TTCTGCTTGAATCCTATCTGAGAAGCCCACTC-T  1044
      |||||| || ||||| ||||||||||||| ||||||||| |||||||| |
seq2  TAGAGT-CTTCAGGGTTTCTGCTTGAATCTTATCTGAGAGGCCCACTCTT  1047

seq1  GCTCTCAAATACAGTTTGGGCAGAATTTGTTGGC  1078
       | |||||   |||||||||||||||||||||||
seq2  TCCCTCAATACCAGTTTGGGCAGAATTTGTTGGC  1081