BAC Information

Click to search

BAC

Clone NameB6Ng01-100O04
Chromosome12 (Build37)
Map Location 118,407,443 - 118,408,496
singlet/doubletsinglet
Overlap genePtprn2
Upstream geneWdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100O04.bB6Ng01-100O04.g
ACCDH910249DH910250
length1,046118
definitionDH910249|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O04, 5' end.DH910250|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttctgcattattcatattgtaaacttctttctttctcattatt
tgaactaagagccaaaggtgatttggggctttatgcggcacgttctgacg
agtgatggacctacagttgtgtggggtcctgacacatgtctctattttgt
catgtgttttcccatacatggggttgatttggccttggatcttgattcag
ggtgtctcagaagtataatctgtaaagaaaacacatactaggagaaacag
ggaagacccaccatgcaggccctccacagagaggggagaacttctgtgga
atgtagctggaggggctaagatgttcctgtgagtcctgagtctagggcct
tcagatagtactgagttctggtcaggacctatagtgttaaggatctataa
ggatctatagtataaggatctatagagttatatccttcaatgcctggcaa
ggtcacaccaaggtgagagtgcctgggtaggaaatgcaagtgaggagaat
cccactgccattagtcagatctctgggataaaagctgagtaaacaggaac
acagaggtgggctcggctggggcttaaaaaggagtagcagaaatggggag
ctgacacataccaagggagacactgggaggtcggaacaggtaaagagaac
atgggtgagctgtgtgcatcctaacagaaagcagacggacccacacagca
cagctggactccctccaaggcagaggagcctcgaagccagggcaagtgac
tccttggtccatatttaacaaagctggcaactccctagggtaaagagcct
tggtgtaggagtgaagtacttgtaaggtctcagtttctaaagtgaccatg
gcagctgcagagccgactgtgggcaaagcaggggacaatatgctccagtg
tgtgatgatgtcacccacgggtagtgccgcttttcaggaagctctcacag
agctacactgggcagataaggcctggtgagcccggggatacaagagagtt
cttagccatacgagaaagaaaagctttgaggaaagcaactgcagtc
aaggcagggcaggaacctggaggcaggaattgatgcagaggccatggagg
gatgatgcttgttggctttctctgcctgctttcatcttccttccttcctt
ccttccttccttacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118407443_118408496
seq2: B6Ng01-100O04.b_43_1088

seq1  GAATTCTTTCTGCATTATTCATATTGTAAACTTCTTTCTTTCTCATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCATTATTCATATTGTAAACTTCTTTCTTTCTCATTATT  50

seq1  TGAACTAAGAGCCAAAGGTGATTTGGGGCTTTATGCGGCACGTTCTGACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAGAGCCAAAGGTGATTTGGGGCTTTATGCGGCACGTTCTGACG  100

seq1  AGTGATGGACCTACAGTTGTGTGGGGTCCTGACACATGTCTCTATTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGACCTACAGTTGTGTGGGGTCCTGACACATGTCTCTATTTTGT  150

seq1  CATGTGTTTTCCCATACATGGGGTTGATTTGGCCTTGGATCTTGATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTTTCCCATACATGGGGTTGATTTGGCCTTGGATCTTGATTCAG  200

seq1  GGTGTCTCAGAAGTATAATCTGTAAAGAAAACACATACTAGGAGAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTCAGAAGTATAATCTGTAAAGAAAACACATACTAGGAGAAACAG  250

seq1  GGAAGACCCACCATGCAGGCCCTCCACAGAGAGGGGAGAACTTCTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCCACCATGCAGGCCCTCCACAGAGAGGGGAGAACTTCTGTGGA  300

seq1  ATGTAGCTGGAGGGGCTAAGATGTTCCTGTGAGTCCTGAGTCTAGGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTGGAGGGGCTAAGATGTTCCTGTGAGTCCTGAGTCTAGGGCCT  350

seq1  TCAGATAGTACTGAGTTCTGGTCAGGACCTATAGTGTTAAGGATCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGTACTGAGTTCTGGTCAGGACCTATAGTGTTAAGGATCTATAA  400

seq1  GGATCTATAGTATAAGGATCTATAGAGTTATATCCTTCAATGCCTGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTATAGTATAAGGATCTATAGAGTTATATCCTTCAATGCCTGGCAA  450

seq1  GGTCACACCAAGGTGAGAGTGCCTGGGTAGGAAATGCAAGTGAGGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACCAAGGTGAGAGTGCCTGGGTAGGAAATGCAAGTGAGGAGAAT  500

seq1  CCCACTGCCATTAGTCAGATCTCTGGGATAAAAGCTGAGTAAACAGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCCATTAGTCAGATCTCTGGGATAAAAGCTGAGTAAACAGGAAC  550

seq1  ACAGAGGTGGGCTCGGCTGGGGCTTAAAAAGGAGTAGCAGAAATGGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTGGGCTCGGCTGGGGCTTAAAAAGGAGTAGCAGAAATGGGGAG  600

seq1  CTGACACATACCAAGGGAGACACTGGGAGGTCGGAACAGGTAAAGAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACATACCAAGGGAGACACTGGGAGGTCGGAACAGGTAAAGAGAAC  650

seq1  ATGGGTGAGCTGTGTGCATCCTAACAGAAAGCAGACGGACCCACACAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGAGCTGTGTGCATCCTAACAGAAAGCAGACGGACCCACACAGCA  700

seq1  CAGCTGGACTCCCTCCAAGGCAGAGGAGCCTCGAAGCCAGGGCAAGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGACTCCCTCCAAGGCAGAGGAGCCTCGAAGCCAGGGCAAGTGAC  750

seq1  TCCTTGGTCCATATTCAACAAAGCTGGCAACTCCCTAGGGTAAAGAGCCT  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTCCATATTTAACAAAGCTGGCAACTCCCTAGGGTAAAGAGCCT  800

seq1  TGGTGTAGGAGTGAAGTACTTGTAAGGTCTCAGTTTCTAAGGTGACCATG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGTGTAGGAGTGAAGTACTTGTAAGGTCTCAGTTTCTAAAGTGACCATG  850

seq1  GCAGCTGCAGAGCCGACTGTGGGCAAAGGCAGGGGACAATATGCTCCAGT  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCAGCTGCAGAGCCGACTGTGGGCAAA-GCAGGGGACAATATGCTCCAGT  899

seq1  GTGTGATGATGTCACCCACGGGTAGTGCCGCTTTTCAGGAAGCTCTCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGTGATGATGTCACCCACGGGTAGTGCCGCTTTTCAGGAAGCTCTC-AC  948

seq1  AGAGCTACACTGGCAGGATAAGGGGCCTGGTGAGGCCCGGGGATACAAAG  1000
      |||||||||||||   |||||  |||||||||| ||||||||||||||  
seq2  AGAGCTACACTGGGCAGATAA--GGCCTGGTGA-GCCCGGGGATACAA--  993

seq1  GAGAGCTTCCTAGCCATACAGAGAAAG-AGAGCTTTGAGGAAAGCAACTG  1049
      ||||| ||| ||||||||| ||||||| | ||||||||||||||||||||
seq2  GAGAG-TTCTTAGCCATAC-GAGAAAGAAAAGCTTTGAGGAAAGCAACTG  1041

seq1  CAGTC  1054
      |||||
seq2  CAGTC  1046