BAC Information

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BAC

Clone NameB6Ng01-102A05
Chromosome12 (Build37)14 (Build37)
Map Location 32,631,616 - 32,631,84620,616,085 - 20,617,069
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102A05.bB6Ng01-102A05.g
ACCDH911025DH911026
length620983
definitionDH911025|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A05, 5' end.DH911026|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,846)(20,616,085 - 20,617,069)
sequence
gaattcacacaatatgtactcactgataagtggatattagttcagatacg
tagaatacccaagatacaagataacaatttgtgaaactcatgaaactcaa
gaagaatgaagaccaaagtgtggacactttgccccttcttataattggga
acaaaacacccatggaaggagttacaaagacaaagtttggagctgagatg
aaaggatggaccatctagacactgccatatccggggatccatcccataat
cagccccccaaatgctgacaccattgcatatactagcaagattttgctga
aaggaccctgatatagctgtctcttgtgagactatgccgggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggatcacagggccccc
aatggaggagctagagaaagtacccaaggagctaaagggatctgcaatcc
tataggtggaacaacaatataaactaaccagtacctcccagagctcttgt
ctctagctgcatatgtatcagaagatagcctatttggccatcactagaaa
gagaggcccatttgtcttgcaaactttctatgcctcagtacaggggaaca
ccagggccaagaagtgggag
gaattccctccatttgccccgtacatccctacataaatacaaatgtaagc
tagtccagtttgttcctcagccttggggccagctgatatctgggcaaaat
gaagaataaactgcctggcgttctgggagactctggagaggacaagttaa
ctccatccactctttgggacccagagtcttaagtctaagcagcccaggtc
agtagcagccatgttgctgtatgttggccaaggcccatgaaagcagtcac
cacgagtgctgacttgggctcaccagtgcatgaggctcctactgaataag
cttcccctcaatgggtccccaaacaacacccagcaaagcacatcactcgg
gtagtgaaccagagcagccacagggtgggtgagactccaagaagctcaca
accagctagcggtcagtggacatcaggagtctactgagaagaatccagag
cctggaaagtgccccccatcaggcctcagtccaggttccatcttgggcag
ggaggaaaataggagggaaggagctgggagattcccgagtttactcaggt
cttccatcacttaccagaggtgcagtgaaacccgtcccctcgatacccag
gctggcaacggcaggagaaggacccgggggtattgtagcagatagctgcc
tcatgacatcggttttccgcacattcatcaacatctgcagaggtcaggga
caggcagagaggtgaggaaaggaaggaaggaaggccatgacttcaccaca
aacagctgtgtgactacatggtcagagtgcacgtggctagaacatccctg
ggtctgagctgagacgtgctaatgtcgaacactaagcataacagaaacaa
aaacaaaacagaaagcgtgtactggcagttttatgacaacttgacactag
tcagagacataaggggaggggcgcgctcactgcgataatgcttctatagg
tattttcttagtgatcagtggagggtgggactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-102A05.b_384_661 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATAGAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||  ||||||||||||||| | |||                ||||
seq2  GCAAGACAAATGGGCCTCTCTTTCTAGTGATGGCCAAATAGGCTATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGG-GGTACTGGTCAGTTC  102
      ||||||||| ||||||||||||| |||||| ||| ||||||||| |||| 
seq2  TGATACATATGCAGCTAGAGACAAGAGCTCTGGGAGGTACTGGTTAGTTT  150

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTA  152
      ||| |||||||||||||||||| ||||||| |||||||||||||||||||
seq2  ATATTGTTGTTCCACCTATAGGATTGCAGATCCCTTTAGCTCCTTGGGTA  200

seq1  CTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGA  202
      ||||||||| |||||||||||||| ||||||||||| |||||||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTGA  249

seq1  CTGTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||||||||||||||||||||||||||
seq2  CTGTGAGCATCCACTTCTGTGTTTGCTAG  278

seq1: chr14_20616085_20617069
seq2: B6Ng01-102A05.g_68_1050 (reverse)

seq1  GAGT-CCACCCT-CACTGATCACTAAGAAAATACCCTATAGAAGCATTAT  48
      |||| ||||||| |||||||||||||||||||| ||||||||||||||||
seq2  GAGTCCCACCCTCCACTGATCACTAAGAAAATA-CCTATAGAAGCATTAT  49

seq1  CGCAGTTGAGCGCGCCCCTCCCCTTTATGTCTCTGACTAGTGTCAAGTTG  98
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  CGCAG-TGAGCGCGCCCCTCCCC-TTATGTCTCTGACTAGTGTCAAGTTG  97

seq1  TCATAAAACTGCCAGTACACGCTTTCTGTTTTGTTTTTTGTTTCTGTTAT  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCATAAAACTGCCAGTACACGCTTTCTGTTTTG-TTTTTGTTTCTGTTAT  146

seq1  GCTTAGTGTTCGACATTAGCACGTCTCAGCTCAGACCCAGGGATGTTCTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGTTCGACATTAGCACGTCTCAGCTCAGACCCAGGGATGTTCTA  196

seq1  GCCACGTGCACTCTGACCATGTAGTCACACAGCTGTTTGTGGTGAAGTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTGCACTCTGACCATGTAGTCACACAGCTGTTTGTGGTGAAGTCA  246

seq1  TGGCCTTCCTTCCTTCCTTTCCTCACCTCTCTGCCTGTCCCTGACCTCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCCTTCCTTCCTTTCCTCACCTCTCTGCCTGTCCCTGACCTCTG  296

seq1  CAGATGTTGATGAATGTGCGGAAAACCGATGTCATGAGGCAGCTATCTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTGATGAATGTGCGGAAAACCGATGTCATGAGGCAGCTATCTGC  346

seq1  TACAATACCCCCGGGTCCTTCTCCTGCCGTTGCCAGCCTGGGTATCGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATACCCCCGGGTCCTTCTCCTGCCGTTGCCAGCCTGGGTATCGAGG  396

seq1  GGACGGGTTTCACTGCACCTCTGGTAAGTGATGGAAGACCTGAGTAAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGGTTTCACTGCACCTCTGGTAAGTGATGGAAGACCTGAGTAAACT  446

seq1  CGGGAATCTCCCAGCTCCTTCCCTCCTATTTTCCTCCCTGCCCAAGATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAATCTCCCAGCTCCTTCCCTCCTATTTTCCTCCCTGCCCAAGATGG  496

seq1  AACCTGGACTGAGGCCTGATGGGGGGCACTTTCCAGGCTCTGGATTCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGACTGAGGCCTGATGGGGGGCACTTTCCAGGCTCTGGATTCTTC  546

seq1  TCAGTAGACTCCTGATGTCCACTGACCGCTAGCTGGTTGTGAGCTTCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGACTCCTGATGTCCACTGACCGCTAGCTGGTTGTGAGCTTCTTG  596

seq1  GAGTCTCACCCACCCTGTGGCTGCTCTGGTTCACTACCCGAGTGATGTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCACCCACCCTGTGGCTGCTCTGGTTCACTACCCGAGTGATGTGC  646

seq1  TTTGCTGGGTGTTGTTTGGGGACCCATTGAGGGGAAGCTTATTCAGTAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGGTGTTGTTTGGGGACCCATTGAGGGGAAGCTTATTCAGTAGG  696

seq1  AGCCTCATGCACTGGTGAGCCCAAGTCAGCACTCGTGGTGACTGCTTTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCATGCACTGGTGAGCCCAAGTCAGCACTCGTGGTGACTGCTTTCA  746

seq1  TGGGCCTTGGCCAACATACAGCAACATGGCTGCTACTGACCTGGGCTGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTGGCCAACATACAGCAACATGGCTGCTACTGACCTGGGCTGCT  796

seq1  TAGACTTAAGACTCTGGGTCCCAAAGAGTGGATGGAGTTAACTTGTCCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTAAGACTCTGGGTCCCAAAGAGTGGATGGAGTTAACTTGTCCTC  846

seq1  TCCAGAGTCTCCCAGAACGCCAGGCAGTTTATTCTTCATTTTGCCCAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTCTCCCAGAACGCCAGGCAGTTTATTCTTCATTTTGCCCAGAT  896

seq1  ATCAGCTGGCCCCAAGGCTGAGGAACAAACTGGACTAGCTTACATTTGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGGCCCCAAGGCTGAGGAACAAACTGGACTAGCTTACATTTGTA  946

seq1  TTTATGTAGGGATGTACGGGGCAAATGGAGGGAATTC  985
      |||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAGGGATGTACGGGGCAAATGGAGGGAATTC  983