BAC Information

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BAC

Clone NameB6Ng01-103H11
Chromosome12 (Build37)
Map Location 37,637,751 - 37,760,945
singlet/doubletdoublet
Overlap genenone
Upstream geneAgr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103H11.bB6Ng01-103H11.g
ACCDH912047DH912048
length1,1501,095
definitionDH912047|Mus musculus domesticus DNA, BAC clone: B6Ng01-103H11, 5' end.DH912048|Mus musculus domesticus DNA, BAC clone: B6Ng01-103H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,637,751 - 37,638,908)(37,759,845 - 37,760,945)
sequence
gaattcttcaatcagtaactccagccagtgcttctccctctggctcccac
tccttcccactgagccacgacactgggctgatttgtgctgattctacgtg
tacttctggctgtaagttcatatttggatccaaacagtgagatctgttca
gactccacagcctgataaacttcatcatcttgaagttcactggcatagtt
actatttccaagaaccctgaaaggatgaaacatgcattgcacatttagga
agtatggcattcatcactaggagaacatccatattctgcaagccagtcta
cgtttggtttgcttgctggggcacggagtggggtggggaacaggacaata
gaagtttgcattttcgttcaataataacatttaatttaattttctcaaaa
tattattttcaaaattaaagcataaaagagtgaggagataaaatacttca
gtgggctgaaataaatttaacacgacttaccacgtcttcacattggttcc
aagtaacacagcaaggcttccaaaacaaatgctgcgtgtaagagctaatg
atgataaaattatgttttttttttcctttttattgtgtctaacagaacga
agtagaaaatgcttaggcatcggttcatacgtgaggaataaccatttaga
actctgtgatctttgagttctgtggatattactattcttgtggatgtgca
tcttgcgtttacaccttcaaagctaacatagtaacccaaagaaaaacaag
aacttctattcatctggacatacaactctctgggtagtactaaataaagt
caatgaacaagtgtgctggtaaatttcaaagagatttttaaatgtgattt
acttccattctcatgagtgtttttccccctttctttcctcctccttgtaa
catgtcgattcccttctctcagaaataaacccttagagaatgaaactgac
agaagtaaaggggtgaaaagacacgcttgcataatatcgcctaggctcat
caaaaagcgtgtaatattcagagaatttttaaaatcattcacatgtttaa
tatctcggatgatagctattttccctggtatccctcacaaagcgccccaa
catccacaactctctcttctctcctttcttggatggagggggtgcttccc

gaattcaggagtatgatctgtccagaaagacaacgatgggtttttttttt
taacaaaggcaaagatggttttttttttttaacaaagtaggttttaagaa
atgctttctgagagtattaagggtgagatgttaaaaaaaaattagtatct
tcagaagaagttgaatgaaagaaccaagcagatagttagcatagatatta
cttaaatttgatatcctgttttaaattttataaacttttaagtaaaataa
tatggcttataatcaacagctggaaaccaatttttgtaattatcaaagga
ttaatctcttgagttaaaaaaggacagctcccagtactatatgttaaaaa
tatagagaggtcaaggaagctagtctttgggttacaagtgtactcacaca
cacatcccctagctcacacatacaatacattcataacaatgtccttctaa
gtattaatgaaatttaccttcacatataaaaattcctccaccattattat
catcatggtttgatgatccaggaacccccaaaggagataaccctatactt
gagatacttgatcagtagagtctaaggtttctcttattcctaaagctaaa
tcactgtgcttcacctcatcaaatagacactgatgaatctcttatcatcc
cattgtatgaataatgtaagaagatattttgaaagacactaataatttat
caggctacatggttgtgattgttatgttttttattaattagcatgacgaa
tctcttaatgtacgtaaattatcagttaaactttattataggcctgacgg
tacaaaaacaataggagtttataaagtttcatgctgtttgtggctcttaa
tattcattgaagccttggaactcagaccccttagataatgtgtaactgct
gaaagtctcccgttagggacaaagttcagttttctatgtagtccaatatt
ctttaaactatagaattggccaaattagtcacccatcagtaatttactca
ttagtcttcatgtaagacatttcaccctatagcaatcaaacagaagagga
gtaatgatgcatgatgaaattaagacattataaatgtcttctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_37637751_37638908
seq2: B6Ng01-103H11.b_42_1191

seq1  GAATTCTTCAATCAGTAACTCCAGCCAGTGCTTCTCCCTCTGGCTCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAATCAGTAACTCCAGCCAGTGCTTCTCCCTCTGGCTCCCAC  50

seq1  TCCTTCCCACTGAGCCACGACACTGGGCTGATTTGTGCTGATTCTACGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCACTGAGCCACGACACTGGGCTGATTTGTGCTGATTCTACGTG  100

seq1  TACTTCTGGCTGTAAGTTCATATTTGGATCCAAACAGTGAGATCTGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGGCTGTAAGTTCATATTTGGATCCAAACAGTGAGATCTGTTCA  150

seq1  GACTCCACAGCCTGATAAACTTCATCATCTTGAAGTTCACTGGCATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACAGCCTGATAAACTTCATCATCTTGAAGTTCACTGGCATAGTT  200

seq1  ACTATTTCCAAGAACCCTGAAAGGATGAAACATGCATTGCACATTTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCCAAGAACCCTGAAAGGATGAAACATGCATTGCACATTTAGGA  250

seq1  AGTATGGCATTCATCACTAGGAGAACATCCATATTCTGCAAGCCAGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGCATTCATCACTAGGAGAACATCCATATTCTGCAAGCCAGTCTA  300

seq1  CGTTTGGTTTGCTTGCTGGGGCACGGAGTGGGGTGGGGAACAGGACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGTTTGCTTGCTGGGGCACGGAGTGGGGTGGGGAACAGGACAATA  350

seq1  GAAGTTTGCATTTTCGTTCAATAATAACATTTAATTTAATTTTCTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGCATTTTCGTTCAATAATAACATTTAATTTAATTTTCTCAAAA  400

seq1  TATTATTTTCAAAATTAAAGCATAAAAGAGTGAGGAGATAAAATACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTCAAAATTAAAGCATAAAAGAGTGAGGAGATAAAATACTTCA  450

seq1  GTGGGCTGAAATAAATTTAACACGACTTACCACGTCTTCACATTGGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGAAATAAATTTAACACGACTTACCACGTCTTCACATTGGTTCC  500

seq1  AAGTAACACAGCAAGGCTTCCAAAACAAATGCTGCGTGTAAGAGCTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACACAGCAAGGCTTCCAAAACAAATGCTGCGTGTAAGAGCTAATG  550

seq1  ATGATAAAATTATGTTTTTTTTTTCCTTTTTATTGTGTCTAACAGAACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAATTATGTTTTTTTTTTCCTTTTTATTGTGTCTAACAGAACGA  600

seq1  AGTAGAAAATGCTTAGGCATCGGTTCATACGTGAGGAATAACCATTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAATGCTTAGGCATCGGTTCATACGTGAGGAATAACCATTTAGA  650

seq1  ACTCTGTGATCTTTGAGTTCTGTGGATATTACTATTCTTGTGGATGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGATCTTTGAGTTCTGTGGATATTACTATTCTTGTGGATGTGCA  700

seq1  TCTTGCGTTTACACCTTCAAAGCTAACATAGTAACCCAAAGAAAAACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCGTTTACACCTTCAAAGCTAACATAGTAACCCAAAGAAAAACAAG  750

seq1  AACTTCTATTCATCTGGACATACAACTCTCTGGGTAGTACTAAATAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTATTCATCTGGACATACAACTCTCTGGGTAGTACTAAATAAAGT  800

seq1  CAATGAACAAGTGTGCTGGTAAATTTCAAAGAGATTTTTAAATGTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACAAGTGTGCTGGTAAATTTCAAAGAGATTTTTAAATGTGATTT  850

seq1  ACTTCCATTCTCATGAGTGTTTTTCCCCCTTTCTTTCCTCCTCCTTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTCTCATGAGTGTTTTTCCCCCTTTCTTTCCTCCTCCTTGTAA  900

seq1  CATGTCGATTCCCTTCTCTCAGATATAAACCCTTAGAGAATGAAACTGAC  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATGTCGATTCCCTTCTCTCAGAAATAAACCCTTAGAGAATGAAACTGAC  950

seq1  AGAAGTAAA-GGGTGAAAAGACACGCTTGCATAATATCGCCTAGGCTCAT  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAAGGGGTGAAAAGACACGCTTGCATAATATCGCCTAGGCTCAT  1000

seq1  CAAAAAAGCGTGTAATATTCAGGAGAATTTTTAAAAATCATTCCACATGT  1049
      | ||||||||||||||||||| |||||||||| ||||||||| |||||||
seq2  C-AAAAAGCGTGTAATATTCA-GAGAATTTTT-AAAATCATT-CACATGT  1046

seq1  TT-ATATCTCGAATGATAGCCTATTTCCCTGGTATCCCTCCACAAGCCGC  1098
      || |||||||| ||||||||   |||||||||||||||| |||||  || 
seq2  TTAATATCTCGGATGATAGCTATTTTCCCTGGTATCCCT-CACAAAGCG-  1094

seq1  CCCCACCATCCCACAACCTCTCTCTCCTCCCTCCCCCTTTCTTGTAT---  1145
      ||||| ||| |||||| |||||||| ||     | ||||||||| ||   
seq2  CCCCAACAT-CCACAA-CTCTCTCTTCT-----CTCCTTTCTTGGATGGA  1137

seq1  GAGGGTGCTTCCC  1158
      | |||||||||||
seq2  GGGGGTGCTTCCC  1150

seq1: chr12_37759845_37760945
seq2: B6Ng01-103H11.g_68_1162 (reverse)

seq1  TTTAGAAGACATTTAT-ATGTCTTTCATTTCAATCCATGCATCATTACCT  49
      |||||||||||||||| ||||| || ||||||   |||||||||||| ||
seq2  TTTAGAAGACATTTATAATGTC-TTAATTTCA--TCATGCATCATTA-CT  46

seq1  CCTCTTCTGGTTTGATTGCTATAGGGTTGAAATGTCTGTACATGGAGACT  99
      |||||||| ||||||||||||||||| |||||||||| |||||| |||||
seq2  CCTCTTCT-GTTTGATTGCTATAGGG-TGAAATGTCT-TACATGAAGACT  93

seq1  AATGAGTAAATTACTGATGGGTGACTAATTTGG-CAATTCTATAGTTAAA  148
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  AATGAGTAAATTACTGATGGGTGACTAATTTGGCCAATTCTATAGTTTAA  143

seq1  AGAATATTGGACTACATAGAAAACTGAACTTTGTCCCTAACGGGAGACTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTGGACTACATAGAAAACTGAACTTTGTCCCTAACGGGAGACTT  193

seq1  TCAGCAGTTAACACATTATCTAAGGGGTCTGAGTTCCAAGGCTTCAATGA  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTT-ACACATTATCTAAGGGGTCTGAGTTCCAAGGCTTCAATGA  242

seq1  ATATTAAGAGCCACAAACAGCATGAAACTTTATAAACTCCTATTGTTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGAGCCACAAACAGCATGAAACTTTATAAACTCCTATTGTTTTT  292

seq1  GTACCGTCAGGCCTATAATAAAGTTTAACTGATAATTTACGTACATTAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGTCAGGCCTATAATAAAGTTTAACTGATAATTTACGTACATTAAG  342

seq1  AGATTCGTCATGCTAATTAATAAAAAACATAACAATCACAACCATGTAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCGTCATGCTAATTAATAAAAAACATAACAATCACAACCATGTAGC  392

seq1  CTGATAAATTATTAGTGTCTTTCAAAATATCTTCTTACATTATTCATACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATTATTAGTGTCTTTCAAAATATCTTCTTACATTATTCATACA  442

seq1  ATGGGATGATAAGAGATTCATCAGTGTCTATTTGATGAGGTGAAGCACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGATAAGAGATTCATCAGTGTCTATTTGATGAGGTGAAGCACAG  492

seq1  TGATTTAGCTTTAGGAATAAGAGAAACCTTAGACTCTACTGATCAAGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGCTTTAGGAATAAGAGAAACCTTAGACTCTACTGATCAAGTAT  542

seq1  CTCAAGTATAGGGTTATCTCCTTTGGGGGTTCCTGGATCATCAAACCATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTATAGGGTTATCTCCTTTGGGGGTTCCTGGATCATCAAACCATG  592

seq1  ATGATAATAATGGTGGAGGAATTTTTATATGTGAAGGTAAATTTCATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATAATGGTGGAGGAATTTTTATATGTGAAGGTAAATTTCATTAA  642

seq1  TACTTAGAAGGACATTGTTATGAATGTATTGTATGTGTGAGCTAGGGGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAAGGACATTGTTATGAATGTATTGTATGTGTGAGCTAGGGGAT  692

seq1  GTGTGTGTGAGTACACTTGTAACCCAAAGACTAGCTTCCTTGACCTCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGAGTACACTTGTAACCCAAAGACTAGCTTCCTTGACCTCTCT  742

seq1  ATATTTTTAACATATAGTACTGGGAGCTGTCCTTTTTTAACTCAAGAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAACATATAGTACTGGGAGCTGTCCTTTTTTAACTCAAGAGAT  792

seq1  TAATCCTTTGATAATTACAAAAATTGGTTTCCAGCTGTTGATTATAAGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTTGATAATTACAAAAATTGGTTTCCAGCTGTTGATTATAAGCC  842

seq1  ATATTATTTTACTTAAAAGTTTATAAAATTTAAAACAGGATATCAAATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTTACTTAAAAGTTTATAAAATTTAAAACAGGATATCAAATTT  892

seq1  AAGTAATATCTATGCTAACTATCTGCTTGGTTCTTTCATTCAACTTCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATATCTATGCTAACTATCTGCTTGGTTCTTTCATTCAACTTCTTC  942

seq1  TGAAGATACTAATTTTTTTTTAACATCTCACCCTTAATACTCTCAGAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATACTAATTTTTTTTTAACATCTCACCCTTAATACTCTCAGAAAG  992

seq1  CATTTCTTAAAACCTACTTTGTTAAAAAAAAAAAACCATCTTTGCCTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTAAAACCTACTTTGTTAAAAAAAAAAAACCATCTTTGCCTTTG  1042

seq1  TTAAAAAAAAAAACCCATCGTTGTCTTTCTGGACAGATCATACTCCTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAACCCATCGTTGTCTTTCTGGACAGATCATACTCCTGAA  1092

seq1  TTC  1101
      |||
seq2  TTC  1095