BAC Information

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BAC

Clone NameB6Ng01-104B08
Chromosome12 (Build37)9 (Build37)
Map Location 32,631,610 - 32,631,8467,121,625 - 7,122,707
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104B08.bB6Ng01-104B08.g
ACCDH912485DH912486
length5541,078
definitionDH912485|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B08, 5' end.DH912486|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,610 - 32,631,846)(7,121,625 - 7,122,707)
sequence
tttgtttagctctgagccccattttttaatggggttatttgattttctgg
agtccaccttctcttacaattgggaacaaaacacccatggaaggaattac
agagacaaagtttggagctgagatgaaaggatggaccatctagagactgc
catattcagggatccaacccataatcaatttctaaacgctgacaccattg
catacactagcaagattttgctgaaaggacccagatatagctgtctcttg
tgagactatgctggggcctagcaaacacagaagtggatgctcacagtcag
ctattggatggatcacagggcctccaatggaggagctagagaaagaaacc
aaggagctaaagggatctgcaaccctataggtggaacaacaatatgaact
aaccagtacccccctggagctcgtgtctctagctgcatatgtagcagaag
atggcctagtcggccatcactggaaagaaaggcccattggttgtgcaaac
tttatatgcctcagtacaggggaacaccagggccaagaagtgggagtggg
aggg
gaattcagtttggtccaaatgttaactttgtatttgaaactcatgattta
agttgtgcttcaccagccacaatatctagaatgggaatgatatttcttag
gtaagccacagatcatttctatactatatattagaatattctttattttt
cattttagtttcataactaacttaattcagaatagaatgaacagcctggt
gatagaggtacacatcatttattccagctcttgggaggcagagcctggta
tccacttctgtgagtttaagaccatcctggtgtacagagagaattccaat
acacctagggctacaaagagaaaccttgtctttaaaatgcaaaaaaaaaa
aaaaaaagaatgagtttatataagttatgtattcatagtgattgtatcta
tgattagctttttttggttgtattttaattgattcagagtttgttttatt
atatgtgaattattttagcaatttggtcatacctcaaaattatttttatt
attttaagagaaatagcaactacttaatttactttaaaaacttaaaatat
tttgaatttagagatgtaagcatactaagtaagcattaggaaacagtgtt
taaatcccagtagcatatcttagttacgtagttttaaattgttaagccat
tacgtctaattcaagattaggttccacagcctaaatttggcatcttacac
cttgacaacctctttcctaagtaattttttatttttccagtgaactgaga
aaaggtttaaacagcaaaaatgagtactaactagttttagatttcacata
ctccatgttgtgtcctgtttaaatgtcacatgcaccgttacaagtagtaa
ctagttttagctgtcacatactcattcacataccagaacatggacatttg
ggtcagatttattttcccaaatgagtaatagtttggcacaaatgttagaa
tttgtcattcatcaccctatatttcaggacagtttgagttgtcttatgtt
gttggctgatgcactgctgttaccactggggttagagtttgtcttgaaat
tattaactgtttttttcactggaagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631610_32631846
seq2: B6Ng01-104B08.b_318_604 (reverse)

seq1  CCCTCC--CTCCCACTTCTTGGCCCTG-----------------------  25
      ||||||  |||||||||||||||||||                       
seq2  CCCTCCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATA  50

seq1  --------GCAAGACCCATGGGCCTCTCTTTCCACTGA------------  55
              |||  ||| |||||||| |||||||| |||            
seq2  TAAAGTTTGCACAACCAATGGGCCTTTCTTTCCAGTGATGGCCGACTAGG  100

seq1  ----CTTCTGATACATACGCAGCTAGAGACACGAGCTCC--GGGGGTACT  99
          |||||| |||||| |||||||||||||||||||||  |||||||||
seq2  CCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCCAGGGGGGTACT  150

seq1  GGTCAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCT  149
      ||| |||||||| |||||||||||||||||||||||||| ||||||||||
seq2  GGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCT  200

seq1  CCTTGGGTACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCC  199
      |||||| | ||||||||| |||||||||||| | ||||||||||| ||||
seq2  CCTTGGTTTCTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGATCC-ATCC  249

seq1  AATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG  237
      ||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG  287

seq1: chr9_7121625_7122707
seq2: B6Ng01-104B08.g_68_1145 (reverse)

seq1  ATACTTTCAGTGAAAGAAACAGTTAAATAATTTCAAGACATACTCTAAAC  50
      |||||| |||||||| |||||||| ||||||||||||||| ||||| |||
seq2  ATACTTCCAGTGAAAAAAACAGTT-AATAATTTCAAGACAAACTCT-AAC  48

seq1  CCCAGTGGTAACAGCAGTGCATCAGCC-ACAACATAAGACAACCTCAAAC  99
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  CCCAGTGGTAACAGCAGTGCATCAGCCAACAACATAAGACAA-CTCAAAC  97

seq1  TGTCCTGAAATATAGGGTTGATGAATGACAAATTCTAAACATTTGTGCCA  149
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TGTCCTGAAATATAGGG-TGATGAATGACAAATTCT-AACATTTGTGCCA  145

seq1  AACTATTACTCATTTGGGAAAATAAATCTGACCCAAATGTCCATGTTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTACTCATTTGGGAAAATAAATCTGACCCAAATGTCCATGTTCTG  195

seq1  GTATGTGAATGAGTATGTGACAGCTAAAACTAGTTACTACTTGTAACGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGAATGAGTATGTGACAGCTAAAACTAGTTACTACTTGTAACGGT  245

seq1  GCATGTGACATTTAAAACAGGACACAACATGGAGTATGTGAAATCTAAAA  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCATGTGACATTT-AAACAGGACACAACATGGAGTATGTGAAATCTAAAA  294

seq1  CTAGTTAGTACTCATTTTTGCTGTTTAAACCTTTTCTCAGTTCACTGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAGTACTCATTTTTGCTGTTTAAACCTTTTCTCAGTTCACTGGAA  344

seq1  AAATAAAAAATTACTTAGGAAAGAGGTTGTCAAGGTGTAAGATGCCAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAATTACTTAGGAAAGAGGTTGTCAAGGTGTAAGATGCCAAAT  394

seq1  TTAGGCTGTGGAACCTAATCTTGAATTAGACGTAATGGCTTAACAATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTGTGGAACCTAATCTTGAATTAGACGTAATGGCTTAACAATTTA  444

seq1  AAACTACGTAACTAAGATATGCTACTGGGATTTAAACACTGTTTCCTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACGTAACTAAGATATGCTACTGGGATTTAAACACTGTTTCCTAAT  494

seq1  GCTTACTTAGTATGCTTACATCTCTAAATTCAAAATATTTTAAGTTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTAGTATGCTTACATCTCTAAATTCAAAATATTTTAAGTTTTTA  544

seq1  AAGTAAATTAAGTAGTTGCTATTTCTCTTAAAATAATAAAAATAATTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTAAGTAGTTGCTATTTCTCTTAAAATAATAAAAATAATTTTG  594

seq1  AGGTATGACCAAATTGCTAAAATAATTCACATATAATAAAACAAACTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGACCAAATTGCTAAAATAATTCACATATAATAAAACAAACTCTG  644

seq1  AATCAATTAAAATACAACCAAAAAAAGCTAATCATAGATACAATCACTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTAAAATACAACCAAAAAAAGCTAATCATAGATACAATCACTAT  694

seq1  GAATACATAACTTATATAAACTCATTCTTTTTTTTTTTTTTTTTGCATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATAACTTATATAAACTCATTCTTTTTTTTTTTTTTTTTGCATTT  744

seq1  TAAAGACAAGGTTTCTCTTTGTAGCCCTAGGTGTATTGGAATTCTCTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAAGGTTTCTCTTTGTAGCCCTAGGTGTATTGGAATTCTCTCTG  794

seq1  TACACCAGGATGGTCTTAAACTCACAGAAGTGGATACCAGGCTCTGCCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGGATGGTCTTAAACTCACAGAAGTGGATACCAGGCTCTGCCTC  844

seq1  CCAAGAGCTGGAATAAATGATGTGTACCTCTATCACCAGGCTGTTCATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCTGGAATAAATGATGTGTACCTCTATCACCAGGCTGTTCATTC  894

seq1  TATTCTGAATTAAGTTAGTTATGAAACTAAAATGAAAAATAAAGAATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAATTAAGTTAGTTATGAAACTAAAATGAAAAATAAAGAATATT  944

seq1  CTAATATATAGTATAGAAATGATCTGTGGCTTACCTAAGAAATATCATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATATAGTATAGAAATGATCTGTGGCTTACCTAAGAAATATCATTC  994

seq1  CCATTCTAGATATTGTGGCTGGTGAAGCACAACTTAAATCATGAGTTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTAGATATTGTGGCTGGTGAAGCACAACTTAAATCATGAGTTTCA  1044

seq1  AATACAAAGTTAACATTTGGACCAAACTGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  AATACAAAGTTAACATTTGGACCAAACTGAATTC  1078