BAC Information

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BAC

Clone NameB6Ng01-104L15
Chromosome12 (Build37)
Map Location 110,711,678 - 110,813,737
singlet/doubletdoublet
Overlap geneGtl2
Upstream geneEml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1
Downstream geneRtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104L15.bB6Ng01-104L15.g
ACCDH912938DH912939
length7531,118
definitionDH912938|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L15, 5' end.DH912939|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,711,678 - 110,712,424)(110,812,606 - 110,813,737)
sequence
gaattctacaggatggtcacaccaccccagcaagaggaaacagctgacca
aggtttgtctgtcttgggggggggggcgggtaccactgtgggtgtggctt
gctcttgccatctgcacggcacacatgtccttctttctcacactccttcc
ttgtgctctttgaactccagtaacagaggggaaggcagtcacagagcctg
ggagcagcccctgtggtcctgtgtaaggtcaagttcctggaacaaacggt
tcaattgccacttgccctgcctcttggggcagcttggctcccgtgctgca
attcccagccaatgctgctcccaaccactgtgcaattcaggccggccatc
ggattgtcagagaagatcaagctctcggcacactcattccctcaggaaat
acatccttgctccccccatgttgggaactgggcccagcctgatgctaaag
acctgtcattccacccaccattgcaggctgtgttcagcacagtccctgtg
agttctgtgcaaccgtcaggagttattgtcacactccagagcatcacttt
ttcacattgtagatgctatcctcaaaaagcatttaattatccgtttcata
aaaacaaccaccctcaactttaacatcttatcccttcataaaacagccgc
cctcaactaaaacatctgtccgtcgtcgctttggggtttttgttttggga
ctgctttcttctctgctggctgcccaaattagggagggtggacggattgg
agg
gaattccatgggccacaggaaagcactgccatctgccccctccaggatca
ggtcaagctttggacattatattcagccctgtcccaggaaagcctgtagt
ctccaagttttttcctcaattccagatatctgagtttttctcaaaaattt
aaatctgactttcagctctagaataccaaagaggtaaccttcttctggac
ggatgatccaaagtagatcgtcacaaaggtctccctttctggacacttca
atttcattagaggataaagatgggatctccactctataagaacagaggcc
tctctcttgacgaacctatctgagcgtcaccagagctgcatctttagaac
aatatggaagtctctctttctagacacctgagcttcattagatattgaaa
tgaaattctagatatagaatatgaagaaagtctctatttctagacaatca
aacttcactgaaaatgggctggatttctggcattagcatatttctggacc
tttgatcatcactggagactagaaatgcagaattgtagaacactataaag
aggtcttctgggtatctaagtttcagaaccttgaaccgggattctagctc
aaaaatgttaaggaggaccctctttctagacttctgtgcttctggcatct
gtgcttcatcagcaaatgaaaagtacagtctttgttctagaacatcgtaa
agggtcctctttctggataattgggcatcaaagattagaggtggagctta
gcttctgaacagagtggaggtcccctttctagatatctggacatcagaga
gtggggatggagtccaggttctagtacattgtgaaagttctttatggatg
tctgaacgtcatcaaaggctatagatggatagagttctgggtctataaca
tcattgagaatgctcttttctggacatctgtgcttcatcaaaggctggag
tagattcttaggtctggaacatcagagaggtcctttttcagacatctgag
cttcatcaaaggctagatagagggtcctagatctggacatcagaagaggt
catctttctgacatctgagctcatcagctagaagagggttcttagatctg
acatcagaaggcatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_110711678_110712424
seq2: B6Ng01-104L15.b_42_794

seq1  GAATTCTACAGGATGGTCACACCACCCAAGCAAGAGGAAACAGCTGACCA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTACAGGATGGTCACACCACCCCAGCAAGAGGAAACAGCTGACCA  50

seq1  AGGTTTGTCTGTCTTGGGGGGGGGGGCGGGTACCACTGTGGGTGTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTCTGTCTTGGGGGGGGGGGCGGGTACCACTGTGGGTGTGGCTT  100

seq1  GCTCTTGCCATCTGCACGGCACACATGTCCTTCTTTCTCACACTCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCCATCTGCACGGCACACATGTCCTTCTTTCTCACACTCCTTCC  150

seq1  TTGTGCTCTTTGAACTCCAGTAACAGAGGGGAAGGCAGTCACAGAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCTTTGAACTCCAGTAACAGAGGGGAAGGCAGTCACAGAGCCTG  200

seq1  GGAGCAGCCCCTGTGGTCCTGTGTAAGGTCAAGTTCCTGGAACAAACGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCCCCTGTGGTCCTGTGTAAGGTCAAGTTCCTGGAACAAACGGT  250

seq1  TCAATTGCCACTTGCCCTGCCTCTTGGGGCAGCTTGGCTCCCGTGCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCCACTTGCCCTGCCTCTTGGGGCAGCTTGGCTCCCGTGCTGCA  300

seq1  ATTCCCAGCCAATGCTGCTCCCAACCACTGTGCAATTCAGGCCGGCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCCAATGCTGCTCCCAACCACTGTGCAATTCAGGCCGGCCATC  350

seq1  GGATTGTCAGAGAAGATCAAGCTCTCGGCACACTCATTCCCTCAGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTCAGAGAAGATCAAGCTCTCGGCACACTCATTCCCTCAGGAAAT  400

seq1  ACATCCTTGCTCCCCCCATGTTGGGAACTGGGCCCAGCCTGATGCTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTGCTCCCCCCATGTTGGGAACTGGGCCCAGCCTGATGCTAAAG  450

seq1  ACCTGTCATTCCACCCACCATTGCAGGCTGTGTTCAGCACAGTCCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCATTCCACCCACCATTGCAGGCTGTGTTCAGCACAGTCCCTGTG  500

seq1  AGTTCTGTGCAACCGTCAGGAGTTATTGTCACACTCCAGAGCAACAC-TT  549
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  AGTTCTGTGCAACCGTCAGGAGTTATTGTCACACTCCAGAGCATCACTTT  550

seq1  TTCACATTGTAGATGCTATCCTCAAAAAGCATTTAATTATCCG-TTCAT-  597
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  TTCACATTGTAGATGCTATCCTCAAAAAGCATTTAATTATCCGTTTCATA  600

seq1  AAAACAACCACCCTCAACTTTAACATCTTATCCCTTCATAAAACAGCCGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCACCCTCAACTTTAACATCTTATCCCTTCATAAAACAGCCGC  650

seq1  CCTCAACTTAAACATCTGTCCGTCGTCGCTTTGGGG-TTTTGTTTT-GGA  695
      |||||||| ||||||||||||||||||||||||||| ||||||||| |||
seq2  CCTCAACTAAAACATCTGTCCGTCGTCGCTTTGGGGTTTTTGTTTTGGGA  700

seq1  CTGCTTTCTTCTCTGCTGGCTG-CCAGAATAGGGAGGGTGGACGGATTGG  744
      |||||||||||||||||||||| ||| | |||||||||||||||||||||
seq2  CTGCTTTCTTCTCTGCTGGCTGCCCAAATTAGGGAGGGTGGACGGATTGG  750

seq1  AGG  747
      |||
seq2  AGG  753

seq1: chr12_110812606_110813737
seq2: B6Ng01-104L15.g_68_1185 (reverse)

seq1  AAAGATGGCCCTCTCTGATGTTCCAGATCT-AGGACCCTCTCTCTAGCCT  49
      |||||||  ||| ||||||||  ||||||| || ||||||| ||||||  
seq2  AAAGATG--CCT-TCTGATGT--CAGATCTAAGAACCCTCT-TCTAGC--  42

seq1  TTGATGAAGCTCAGATGTCCAGAAAGATGGCCCTCTCTGATGTTCCAGAT  99
       ||||| ||||||||||| |||||||||| ||   ||||||| |||||||
seq2  -TGATG-AGCTCAGATGT-CAGAAAGATGACCTCTTCTGATG-TCCAGAT  88

seq1  CTAGGACCCTCTATCTAGCCTTTGATGAAGCTCAGATGTCCTGAAAGAGG  149
      ||||||||||||||||||||||||||||||||||||||| |||||| | |
seq2  CTAGGACCCTCTATCTAGCCTTTGATGAAGCTCAGATGT-CTGAAA-AAG  136

seq1  GACCTCTCTGATGTTCCAGACCTAAGAATCTACCTCCAGCCTTTGATGAA  199
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GACCTCTCTGATGTTCCAGACCTAAGAATCTA-CTCCAGCCTTTGATGAA  185

seq1  GCACAGATGTCCAGAAAAGAGCATTCTCAATGATGTTATAGACCCAGAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGATGTCCAGAAAAGAGCATTCTCAATGATGTTATAGACCCAGAAC  235

seq1  TCTATCCATCTATAGCCTTTGATGACGTTCAGACATCCATAAAGAACTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCATCTATAGCCTTTGATGACGTTCAGACATCCATAAAGAACTTT  285

seq1  CACAATGTACTAGAACCTGGACTCCATCCCCACTCTCTGATGTCCAGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTACTAGAACCTGGACTCCATCCCCACTCTCTGATGTCCAGATA  335

seq1  TCTAGAAAGGGGACCTCCACTCTGTTCAGAAGCTAAGCTCCACCTCTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAGGGGACCTCCACTCTGTTCAGAAGCTAAGCTCCACCTCTAAT  385

seq1  CTTTGATGCCCAATTATCCAGAAAGAGGACCCTTTACGATGTTCTAGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGCCCAATTATCCAGAAAGAGGACCCTTTACGATGTTCTAGAAC  435

seq1  AAAGACTGTACTTTTCATTTGCTGATGAAGCACAGATGCCAGAAGCACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTACTTTTCATTTGCTGATGAAGCACAGATGCCAGAAGCACAG  485

seq1  AAGTCTAGAAAGAGGGTCCTCCTTAACATTTTTGAGCTAGAATCCCGGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGAAAGAGGGTCCTCCTTAACATTTTTGAGCTAGAATCCCGGTT  535

seq1  CAAGGTTCTGAAACTTAGATACCCAGAAGACCTCTTTATAGTGTTCTACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCTGAAACTTAGATACCCAGAAGACCTCTTTATAGTGTTCTACA  585

seq1  ATTCTGCATTTCTAGTCTCCAGTGATGATCAAAGGTCCAGAAATATGCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCATTTCTAGTCTCCAGTGATGATCAAAGGTCCAGAAATATGCTA  635

seq1  ATGCCAGAAATCCAGCCCATTTTCAGTGAAGTTTGATTGTCTAGAAATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGAAATCCAGCCCATTTTCAGTGAAGTTTGATTGTCTAGAAATAG  685

seq1  AGACTTTCTTCATATTCTATATCTAGAATTTCATTTCAATATCTAATGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTTCATATTCTATATCTAGAATTTCATTTCAATATCTAATGAA  735

seq1  GCTCAGGTGTCTAGAAAGAGAGACTTCCATATTGTTCTAAAGATGCAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTGTCTAGAAAGAGAGACTTCCATATTGTTCTAAAGATGCAGCT  785

seq1  CTGGTGACGCTCAGATAGGTTCGTCAAGAGAGAGGCCTCTGTTCTTATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGACGCTCAGATAGGTTCGTCAAGAGAGAGGCCTCTGTTCTTATAG  835

seq1  AGTGGAGATCCCATCTTTATCCTCTAATGAAATTGAAGTGTCCAGAAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGATCCCATCTTTATCCTCTAATGAAATTGAAGTGTCCAGAAAGG  885

seq1  GAGACCTTTGTGACGATCTACTTTGGATCATCCGTCCAGAAGAAGGTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTTGTGACGATCTACTTTGGATCATCCGTCCAGAAGAAGGTTAC  935

seq1  CTCTTTGGTATTCTAGAGCTGAAAGTCAGATTTAAATTTTTGAGAAAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGTATTCTAGAGCTGAAAGTCAGATTTAAATTTTTGAGAAAAAC  985

seq1  TCAGATATCTGGAATTGAGGAAAAAACTTGGAGACTACAGGCTTTCCTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATCTGGAATTGAGGAAAAAACTTGGAGACTACAGGCTTTCCTGG  1035

seq1  GACAGGGCTGAATATAATGTCCAAAGCTTGACCTGATCCTGGAGGGGGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCTGAATATAATGTCCAAAGCTTGACCTGATCCTGGAGGGGGCA  1085

seq1  GATGGCAGTGCTTTCCTGTGGCCCATGGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  GATGGCAGTGCTTTCCTGTGGCCCATGGAATTC  1118