BAC Information

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BAC

Clone NameB6Ng01-106F19
Chromosome12 (Build37)
Map Location 27,403,475 - 27,577,126
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106F19.bB6Ng01-106F19.g
ACCDH914126DH914127
length806979
definitionDH914126|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F19, 5' end.DH914127|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,403,475 - 27,404,279)(27,576,151 - 27,577,126)
sequence
gaattcaatgtaggtaagcatatgtagtgcaaagacttagtccatgggct
cctcatgagattgaatccatgggctcctgagacaagtatctattggcctg
cagttctgggttcaaatattttgtcacaggaaaggtggttcacattttat
acctgcccaaatcgcagattgatttcagttgggggcatgcttagcttaga
aatattgttaggacctcagacaaggtaaacttctaaatataggtacccca
ggtttctgttttatgttaaaaaatttgagaagtctgagctacttaaccat
gtgataagtgacagaaggccagatggggatacttaggcagacgttgttcg
aggcctgtcttccaatgctcaacctgccacaggcagcattaagggtcact
gcataatttgctgcttattaaaattctcaaataacaaagtcactcatttt
tagccttacggttcttaagtacatttggtcactccctgctttggagccct
aaggtaaccagaatcaaaaggaaaacccactttgctttgtgtctgaagcc
catcgttcctccaaggaagcaggctgagggtgatgagtcatttcttccac
tcaggaaatgcactgtgggttctaactggtttccagtaaaaggctgtggc
tgagctggccattctctgctctaggtccctgcggattaacttttccttaa
ttagtggtgtgtgtgtgcgtgcatgcgtgcgtgcgtgcgtgcctgcgtgc
gtgcgtgcgtgcgtgcatgtgtgtgtgtgtgtgtgtgtgtatatgtgtgt
gtgtgt
gaattccttgaataagaatcaaaggcattgagacccctacatttggacat
ctactgataataaattctctcttacactcaggtggctcttcatgactttc
aggagccattcttcccctgggccccagctgtgagcctgacagctctgctc
ctggtagctctcttatcatggccagaatgcaatttctaatgtgctcccag
agtctaggctgactcttggagtaggaagaactttagcctcttatttaatt
agtgtatttaaattctgaatttctccaggctacaaaagttgtagtagtga
gagtagaaaattaatctgagcaaagaggtagatgaagggagaggctgagt
ctcacttttagggcattaaggctcacaacactctgcattcaattatcctt
aaagcaatttcaaatttttaaagtttctgtgtcaaagtagacaatggatt
tgtaaaagaaagaaatattttcctaaagtaggccacctatgaaaatcagc
acaggcccctaagcttgggtactttcagagaaattgggccaggctcaagt
aaactcaggttgtggaaaagacaggggtaagttcaaatctgaaaacagcc
tgttccacaccagtgaggctaaagcccctgatgagagtgaccaacagtag
ctgctaccttcagttgttttacttctctgttgcaggtgttcaaaatcaga
acaaggtttatcttgaagcatggggtattctttctaatgaagtgatcgaa
acaagatgcattcttgaaactcagccatgtgggtcaggttttgtgaatga
gttcttcccctcccagctgagctcagggacctacatccttccaggaatgg
tttccaaggtgaccagagaagctcatcattcttcagtgcccagggctccc
ttactgctgtgtagttggcatgagcattcttttctcatgggggaaatcaa
ggcataattgtgtgtgtgtgttgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27403475_27404279
seq2: B6Ng01-106F19.b_42_847

seq1  GAATTCAATGTAGGTAAGCATATGTAGTGCAAAGACTTAGTCCATGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAGGTAAGCATATGTAGTGCAAAGACTTAGTCCATGGGCT  50

seq1  CCTCATGAGATTGAATCCATGGGCTCCTGAGACAAGTATCTATTGGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGAGATTGAATCCATGGGCTCCTGAGACAAGTATCTATTGGCCTG  100

seq1  CAGTTCTGGGTTCAAATATTTTGTCACAGGAAAGGTGGTTCACATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGGTTCAAATATTTTGTCACAGGAAAGGTGGTTCACATTTTAT  150

seq1  ACCTGCCCAAATCGCAGATTGATTTCAGTTGGGGGCATGCTTAGCTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCAAATCGCAGATTGATTTCAGTTGGGGGCATGCTTAGCTTAGA  200

seq1  AATATTGTTAGGACCTCAGACAAGGTAAACTTCTAAATATAGGTACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTTAGGACCTCAGACAAGGTAAACTTCTAAATATAGGTACCCCA  250

seq1  GGTTTCTGTTTTATGTTAAAAAATTTGAGAAGTCTGAGCTACTTAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGTTTTATGTTAAAAAATTTGAGAAGTCTGAGCTACTTAACCAT  300

seq1  GTGATAAGTGACAGAAGGCCAGATGGGGATACTTAGGCAGACGTTGTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAGTGACAGAAGGCCAGATGGGGATACTTAGGCAGACGTTGTTCG  350

seq1  AGGCCTGTCTTCCAATGCTCAACCTGCCACAGGCAGCATTAAGGGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTCTTCCAATGCTCAACCTGCCACAGGCAGCATTAAGGGTCACT  400

seq1  GCATAATTTGCTGCTTATTAAAATTCTCAAATAACAAAGTCACTCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTTGCTGCTTATTAAAATTCTCAAATAACAAAGTCACTCATTTT  450

seq1  TAGCCTTACGGTTCTTAAGTACATTTGGTCACTCCCTGCTTTGGAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTACGGTTCTTAAGTACATTTGGTCACTCCCTGCTTTGGAGCCCT  500

seq1  AAGGTAACCAGAATCAAAAGGAAAACCCACTTTGCTTTGTGTCTGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAACCAGAATCAAAAGGAAAACCCACTTTGCTTTGTGTCTGAAGCC  550

seq1  CATCGTTCCTCCAAGGAAGCAGGCTGAGGGTGATGAGTCATTTCTTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTCCTCCAAGGAAGCAGGCTGAGGGTGATGAGTCATTTCTTCCAC  600

seq1  TCAGGAAATGCACTGTGGGTTCTAACTGGTTTCCAGT-AAAGGCTGTGGC  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAGGAAATGCACTGTGGGTTCTAACTGGTTTCCAGTAAAAGGCTGTGGC  650

seq1  TGAGCTGGCCATTCTCTGCTCTAGGTCCCTGCGGATTAACTTTTCCTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGCCATTCTCTGCTCTAGGTCCCTGCGGATTAACTTTTCCTTAA  700

seq1  TTAGTGGTGTGTGTGTGCGTGCATGCGTGCGTGCGTGCGTGCCTGCGTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTGTGTGTGTGCGTGCATGCGTGCGTGCGTGCGTGCCTGCGTGC  750

seq1  GTGCGTGCGTGCGTGCATGTGTGTGTGTGTGTGTGTGTGTATATGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGCGTGCGTGCATGTGTGTGTGTGTGTGTGTGTGTATATGTGTGT  800

seq1  GTGTGT  805
      ||||||
seq2  GTGTGT  806

seq1: chr12_27576151_27577126
seq2: B6Ng01-106F19.g_61_1039 (reverse)

seq1  CCCCCCCCACACACACACAC-ATTATGCCTTGATTT-CCCCATGAGGAAA  48
      | ||||| |||||||||||| ||||||||||||||| ||||||||| |||
seq2  CACCCCCAACACACACACACAATTATGCCTTGATTTCCCCCATGAGAAAA  50

seq1  GGATGCTCATGCCAACTACACAGCAGT-AGGGAGCCCTGGGCACTGAAGA  97
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATGCTCATGCCAACTACACAGCAGTAAGGGAGCCCTGGGCACTGAAGA  100

seq1  ATGATGAGCTTCTCTGGTCACCTTGGAAACCATTCCTGGAAGGATGTAGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGCTTCTCTGGTCACCTTGGAAACCATTCCTGGAAGGATGTAGG  150

seq1  TCCCTGAGCTCAGCTGGGAGGGGAAGAACTCATTCACAAAACCTGACCCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGCTCAGCTGGGAGGGGAAGAACTCATTCACAAAACCTGACCCA  200

seq1  CATGGCTGAGTTTCAAGAATGCATCTTGTTTCGATCACTTCATTAGAAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGAGTTTCAAGAATGCATCTTGTTTCGATCACTTCATTAGAAAG  250

seq1  AATACCCCATGCTTCAAGATAAACCTTGTTCTGATTTTGAACACCTGCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCCATGCTTCAAGATAAACCTTGTTCTGATTTTGAACACCTGCAA  300

seq1  CAGAGAAGTAAAACAACTGAAGGTAGCAGCTACTGTTGGTCACTCTCATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGTAAAACAACTGAAGGTAGCAGCTACTGTTGGTCACTCTCATC  350

seq1  AGGGGCTTTAGCCTCACTGGTGTGGAACAGGCTGTTTTCAGATTTGAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTTAGCCTCACTGGTGTGGAACAGGCTGTTTTCAGATTTGAACT  400

seq1  TACCCCTGTCTTTTCCACAACCTGAGTTTACTTGAGCCTGGCCCAATTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTGTCTTTTCCACAACCTGAGTTTACTTGAGCCTGGCCCAATTTC  450

seq1  TCTGAAAGTACCCAAGCTTAGGGGCCTGTGCTGATTTTCATAGGTGGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGTACCCAAGCTTAGGGGCCTGTGCTGATTTTCATAGGTGGCCT  500

seq1  ACTTTAGGAAAATATTTCTTTCTTTTACAAATCCATTGTCTACTTTGACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGAAAATATTTCTTTCTTTTACAAATCCATTGTCTACTTTGACA  550

seq1  CAGAAACTTTAAAAATTTGAAATTGCTTTAAGGATAATTGAATGCAGAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTTTAAAAATTTGAAATTGCTTTAAGGATAATTGAATGCAGAGT  600

seq1  GTTGTGAGCCTTAATGCCCTAAAAGTGAGACTCAGCCTCTCCCTTCATCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCTTAATGCCCTAAAAGTGAGACTCAGCCTCTCCCTTCATCT  650

seq1  ACCTCTTTGCTCAGATTAATTTTCTACTCTCACTACTACAACTTTTGTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTGCTCAGATTAATTTTCTACTCTCACTACTACAACTTTTGTAG  700

seq1  CCTGGAGAAATTCAGAATTTAAATACACTAATTAAATAAGAGGCTAAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAAATTCAGAATTTAAATACACTAATTAAATAAGAGGCTAAAGT  750

seq1  TCTTCCTACTCCAAGAGTCAGCCTAGACTCTGGGAGCACATTAGAAATTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTACTCCAAGAGTCAGCCTAGACTCTGGGAGCACATTAGAAATTG  800

seq1  CATTCTGGCCATGATAAGAGAGCTACCAGGAGCAGAGCTGTCAGGCTCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGCCATGATAAGAGAGCTACCAGGAGCAGAGCTGTCAGGCTCAC  850

seq1  AGCTGGGGCCCAGGGGAAGAATGGCTCCTGAAAGTCATGAAGAGCCACCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGCCCAGGGGAAGAATGGCTCCTGAAAGTCATGAAGAGCCACCT  900

seq1  GAGTGTAAGAGAGAATTTATTATCAGTAGATGTCCAAATGTAGGGGTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAAGAGAGAATTTATTATCAGTAGATGTCCAAATGTAGGGGTCTC  950

seq1  AATGCCTTTGATTCTTATTCAAGGAATTC  976
      |||||||||||||||||||||||||||||
seq2  AATGCCTTTGATTCTTATTCAAGGAATTC  979