BAC Information

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BAC

Clone NameB6Ng01-107H15
Chromosome12 (Build37)
Map Location 113,181,463 - 113,321,136
singlet/doubletdoublet
Overlap gene2010107E04Rik, BC048943, Tdrd9
Upstream gene4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886
Downstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107H15.bB6Ng01-107H15.g
ACCDH914937DH914938
length1,087938
definitionDH914937|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H15, 5' end.DH914938|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,181,463 - 113,182,550)(113,320,212 - 113,321,136)
sequence
gaattccagtcagtctgagcagctctggactccccaccacaggaggctgg
gcctgcacattcctgtagccatcttcatcactgctgagcccccttccctc
tgctctgggccgcatggaccgtccagactgggcaccatggcgattcatga
ggatggccagccgtctgtccatcccagactaaaggcccaaaactggccct
gcaaggcagacctgggttttgagagcctgagccctctggctgtgcctcct
aagcccctctgtccctgtagggcctgccttgtggaagcacaaagaattag
ctttcgaagcagcaggtcaggaaaagcagggtctaactgatattctaatt
agggcggcttgagcctcctccaccccatgacagtgcgagctcggcctgct
ggggacagagagcgcaatgacagctctggtctcctcctgcctgattttgc
tggaggcatctttcctcccttctgttcatcaattgtttctttttggccag
catggtgggggatggggctcatggacactgtggctacggtggcacctgtg
ttctctccccaagcctaagccatattgccctcctgctccaacagagaccc
agctttccttcctctggccttggcctgcctacctggaaaggcactgggtt
ggcttccattcaggctgattcctcattaaacagacacgccccttgaaagt
tccgttttcctggtcactcattaggaaacccagttcctggcctaccttca
cgagagaatgggggagccgagctgtgcagactgtggaggccccactctgc
agaaagaaggtctccctaggagacagcaacagatgccacagactgggccc
tggccatgctcatcccgctttcaggacccacgagtccctcctcccccagc
cctacctagatgaggatacaggagagccaggctcagtgatgactccggga
gcagaaggaagttctgagtcaccctggcgggagcaggaagtggttatcac
cagaaccagcactcccaaagctcaggaagccagaagtgtgacgtcccggc
ggtgatgtcacagccagcagggatagaaagcatctgc
gaattccctgtataaccaggctgaccttgaactcagagatctacctaccc
ctgccccccaagtgtggctcttcctgccctagaggattgtggacaaagga
agcagagatgacaaacaggggttcagaagccctgtgagtatgtgtggtga
ataactcacactgggaccagctgcagggagtcagaccaactatactttgg
gtgactcaaggcttataaagttttgggggacggtgtgtagaaacatccag
gatgggcaaaggtcattggctgagggcttagggtaccaaaatgcctcatt
agtctggggaagcatttcaggagtctcagatgctaactgaacaggttctt
accaggagaaagcaagttacataacagttctcaggtagaggcaagcatgg
ggcttagaattccccacacagtcagagaaggagaagatctgctaaatgaa
aggagtctttcatattgtgccaagctcagaggctatccagtcatggtgga
ctttgaccttaattaatcttcccctctttgaacggtagactgagcctcta
gatgaggctggctgctgattagattttcatctagaactggctcatggact
aaggaaggaaacccaggaagattcacacctcttcaaactgtgccaacatg
ggaagatggttaaagggccagaaaaagaaagcaaatgtctggttttaaat
catcagtgatcaaacaggattaagttgaataaagcaaaaggagtcagttc
agggcctggccgagaggttcagcaggaaactgattccaaagaaaaccata
ggccgggcgtggtggcccacgcctttaatcccagcactcgggaggcaaag
gcaggtggatttctgagttcgaggccggcctggtctacaaagtgagttcc
agacagccagggctatacaaagaaaccctgtctgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113181463_113182550
seq2: B6Ng01-107H15.b_39_1126

seq1  GGAATTCCAGTCAGTCTGAGCAGCTCTGGACTCCCCACCACAGGAGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCAGTCAGTCTGAGCAGCTCTGGACTCCCCACCACAGGAGGCTG  50

seq1  GGCCTGCACATTCCTGTAGCCATCTTCATCACTGCTGAGCCCCCTTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCACATTCCTGTAGCCATCTTCATCACTGCTGAGCCCCCTTCCCT  100

seq1  CTGCTCTGGGCCGCATGGACCGTCCAGACTGGGCACCATGGCGATTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGGGCCGCATGGACCGTCCAGACTGGGCACCATGGCGATTCATG  150

seq1  AGGATGGCCAGCCGTCTGTCCATCCCAGACTAAAGGCCCAAAACTGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGCCAGCCGTCTGTCCATCCCAGACTAAAGGCCCAAAACTGGCCC  200

seq1  TGCAAGGCAGACCTGGGTTTTGAGAGCCTGAGCCCTCTGGCTGTGCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCAGACCTGGGTTTTGAGAGCCTGAGCCCTCTGGCTGTGCCTCC  250

seq1  TAAGCCCCTCTGTCCCTGTAGGGCCTGCCTTGTGGAAGCACAAAGAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCCTCTGTCCCTGTAGGGCCTGCCTTGTGGAAGCACAAAGAATTA  300

seq1  GCTTTCGAAGCAGCAGGTCAGGAAAAGCAGGGTCTAACTGATATTCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCGAAGCAGCAGGTCAGGAAAAGCAGGGTCTAACTGATATTCTAAT  350

seq1  TAGGGCGGCTTGAGCCTCCTCCACCCCATGACAGTGCGAGCTCGGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCGGCTTGAGCCTCCTCCACCCCATGACAGTGCGAGCTCGGCCTGC  400

seq1  TGGGGACAGAGAGCGCAATGACAGCTCTGGTCTCCTCCTGCCTGATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAGAGAGCGCAATGACAGCTCTGGTCTCCTCCTGCCTGATTTTG  450

seq1  CTGGAGGCATCTTTCCTCCCTTCTGTTCATCAATTGTTTCTTTTTGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCATCTTTCCTCCCTTCTGTTCATCAATTGTTTCTTTTTGGCCA  500

seq1  GCATGGTGGGGGATGGGGCTCATGGACACTGTGGCTACGGTGGCACCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGGGGATGGGGCTCATGGACACTGTGGCTACGGTGGCACCTGT  550

seq1  GTTCTCTCCCCAAGCCTAAGCCATATTGCCCTCCTGCTCCAACAGAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCCCCAAGCCTAAGCCATATTGCCCTCCTGCTCCAACAGAGACC  600

seq1  CAGCTTTCCTTCCTCTGGCCTTGGCCTGCCTACCTGGAAAGGCACTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCCTTCCTCTGGCCTTGGCCTGCCTACCTGGAAAGGCACTGGGT  650

seq1  TGGCTTCCATTCAGGCTGATTCCTCATTAAACAGACACGCCCCTTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCATTCAGGCTGATTCCTCATTAAACAGACACGCCCCTTGAAAG  700

seq1  TTCCGTTTTCCTGGTCACTCATTAGGAAACCCAGTTCCTGGCCTACCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTTTTCCTGGTCACTCATTAGGAAACCCAGTTCCTGGCCTACCTTC  750

seq1  ACGAGAGAAT-GGGGAGCCGAGCTGTGCAGACTGTGGAGGCCCCACTCTG  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGAATGGGGGAGCCGAGCTGTGCAGACTGTGGAGGCCCCACTCTG  800

seq1  CAGAAAGAAGGTCTCCCTAGGAGACAGCAACAGATGCCACAGACT-GGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGAAAGAAGGTCTCCCTAGGAGACAGCAACAGATGCCACAGACTGGGCC  850

seq1  CTGGCCATGCTCATCCCGCTTTCAGGGACCCACGAGTCCCTCCTCCCCCA  898
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGGCCATGCTCATCCCGCTTTCA-GGACCCACGAGTCCCTCCTCCCCCA  899

seq1  GCCCTACCTAGATGAGGATACAGGAGAGCCAGGCTCAGTGATGACTCCGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACCTAGATGAGGATACAGGAGAGCCAGGCTCAGTGATGACTCCGG  949

seq1  GAGCAGAAGGAAGTCCTGAGTCACCCTGGCCGGGAGCAGGAAGTGGTTAT  998
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  GAGCAGAAGGAAGTTCTGAGTCACCCTGG-CGGGAGCAGGAAGTGGTTAT  998

seq1  CACCAGAACCAGCACTCCCAAAGCCCAGGAAGCCAG-AGTGTGACGTCAC  1047
      |||||||||||||||||||||||| ||||||||||| ||||||||||| |
seq2  CACCAGAACCAGCACTCCCAAAGCTCAGGAAGCCAGAAGTGTGACGTCCC  1048

seq1  AGCGGTGATGTCACCAGCCAGCAGGGATAGGAAGCATCTGC  1088
       |||||||||||| |||||||||||||||| ||||||||||
seq2  GGCGGTGATGTCA-CAGCCAGCAGGGATAGAAAGCATCTGC  1088

seq1: chr12_113320212_113321136
seq2: B6Ng01-107H15.g_82_1004 (reverse)

seq1  TTTTCAAGACAGGGTTTCTTTGTATAGCCCTGGCTGTCCTGGAACTCACT  50
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTC-AGACAGGGTTTCTTTGTATAGCCCTGGCTGT-CTGGAACTCACT  48

seq1  TTGTAGACCAGGCCGGCCTCGAACTCAGAAATCCACCTGCCTTTGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCCGGCCTCGAACTCAGAAATCCACCTGCCTTTGCCTCC  98

seq1  CGAGTGCTGGGATTAAAGGCGTGGGCCACCACGCCCGGCCTATGGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGCGTGGGCCACCACGCCCGGCCTATGGTTTTC  148

seq1  TTTGGAATCAGTTTCCTGCTGAACCTCTCGGCCAGGCCCTGAACTGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATCAGTTTCCTGCTGAACCTCTCGGCCAGGCCCTGAACTGACTC  198

seq1  CTTTTGCTTTATTCAACTTAATCCTGTTTGATCACTGATGATTTAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTATTCAACTTAATCCTGTTTGATCACTGATGATTTAAAACC  248

seq1  AGACATTTGCTTTCTTTTTCTGGCCCTTTAACCATCTTCCCATGTTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTGCTTTCTTTTTCTGGCCCTTTAACCATCTTCCCATGTTGGCA  298

seq1  CAGTTTGAAGAGGTGTGAATCTTCCTGGGTTTCCTTCCTTAGTCCATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGAAGAGGTGTGAATCTTCCTGGGTTTCCTTCCTTAGTCCATGAG  348

seq1  CCAGTTCTAGATGAAAATCTAATCAGCAGCCAGCCTCATCTAGAGGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTAGATGAAAATCTAATCAGCAGCCAGCCTCATCTAGAGGCTCA  398

seq1  GTCTACCGTTCAAAGAGGGGAAGATTAATTAAGGTCAAAGTCCACCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCGTTCAAAGAGGGGAAGATTAATTAAGGTCAAAGTCCACCATGA  448

seq1  CTGGATAGCCTCTGAGCTTGGCACAATATGAAAGACTCCTTTCATTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAGCCTCTGAGCTTGGCACAATATGAAAGACTCCTTTCATTTAGC  498

seq1  AGATCTTCTCCTTCTCTGACTGTGTGGGGAATTCTAAGCCCCATGCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCTCCTTCTCTGACTGTGTGGGGAATTCTAAGCCCCATGCTTGC  548

seq1  CTCTACCTGAGAACTGTTATGTAACTTGCTTTCTCCTGGTAAGAACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTGAGAACTGTTATGTAACTTGCTTTCTCCTGGTAAGAACCTGT  598

seq1  TCAGTTAGCATCTGAGACTCCTGAAATGCTTCCCCAGACTAATGAGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGCATCTGAGACTCCTGAAATGCTTCCCCAGACTAATGAGGCAT  648

seq1  TTTGGTACCCTAAGCCCTCAGCCAATGACCTTTGCCCATCCTGGATGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACCCTAAGCCCTCAGCCAATGACCTTTGCCCATCCTGGATGTTT  698

seq1  CTACACACCGTCCCCCAAAACTTTATAAGCCTTGAGTCACCCAAAGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACCGTCCCCCAAAACTTTATAAGCCTTGAGTCACCCAAAGTATA  748

seq1  GTTGGTCTGACTCCCTGCAGCTGGTCCCAGTGTGAGTTATTCACCACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTGACTCCCTGCAGCTGGTCCCAGTGTGAGTTATTCACCACACA  798

seq1  TACTCACAGGGCTTCTGAACCCCTGTTTGTCATCTCTGCTTCCTTTGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAGGGCTTCTGAACCCCTGTTTGTCATCTCTGCTTCCTTTGTCC  848

seq1  ACAATCCTCTAGGGCAGGAAGAGCCACACTTGGGGGGCAGGGGTAGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCTCTAGGGCAGGAAGAGCCACACTTGGGGGGCAGGGGTAGGTAG  898

seq1  ATCTCTGAGTTCAAGGTCAGCCTGG  925
      |||||||||||||||||||||||||
seq2  ATCTCTGAGTTCAAGGTCAGCCTGG  923