BAC Information

Click to search

BAC

Clone NameB6Ng01-107N22
Chromosome12 (Build37)
Map Location 108,821,390 - 108,981,451
singlet/doubletdoublet
Overlap geneLOC100040497, LOC668151
Upstream geneLOC673604, LOC100040484, LOC382635, LOC100041251
Downstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N22.bB6Ng01-107N22.g
ACCDH915210DH915211
length1,127703
definitionDH915210|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N22, 5' end.DH915211|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,821,390 - 108,822,528)(108,980,750 - 108,981,451)
sequence
gaattccaacagcaaagccacatggtgaacgtgccgcccccttctgcttt
tccatttgcctcccgacctgcttacctcctgacctctaaaccagatcgag
tctcctcttcttgctaaagctgctgtgatatatgatcctccccatttgag
ttcccagaggtcacctcagcttgactcctaagagtactttcccgtgttct
ctctcaaagaactgcagccataccctgcccccgtgatgctatctgcaccc
taacgagatctgcacttgagataaaatatccagactgcatgttccgtgtc
tgccctgagccatgtgaggaccggggctttggggacattgctacatcaat
atgtgccctggggactcaatgtctaatcagggaaatgaaaacacgaccat
tttgttcctgtttcttcttaaccctcctgctctccatctgctgagggtct
atgcttagtggccaggcacggttcataataacaagaaagtggaaagtgaa
aagtggaaaagagatcaagacatttgatatttggtcagttggagagatag
attttatgacagggaatgccatcttctttgaggtcaaaccacaggcccca
gcatccaggggatcctcacactgtagattccaaggagaagagacacaatc
ctctcctggcctgagtgcatttcctacacaggatttttgatggtaagccc
ccagatgcctcagcctgcacaccagcttgtcagatccaccttgggcggag
agggggaaattcatctttattttccctcaagagagaaggaggggcagaga
gaggggacagaaagggtgggtttgtttggcttgtttgcatcctataaata
aaaattcatcaaaggataaaaaaaaaatgattcgttttccgtggagatac
tgcaggctccttgcccggtatccagataaacattgatttaggcagatagt
ttatgaattatacagtgtttaaaagtggggtggcagggaaaatagaatat
accgtagacttcgcatgtttcagccgatacaaatgaggatctggaaagaa
tcttgccctctgtgcctgagatatccccatttcaaggtgccagtcaggac
tcctttgggcaactgcacgttaaaccg
gaattcattggaatctggcaaccgcgggagctaacaaggacagactttat
taaatcgcacacgcaggcttcttgcgactctagcaacctcttgccttttt
gctgtttatttttcttttaagcccaagttcaataaataaacccaactaac
aattaaaaagtccccaaatgattctagattgaaaactgcagaaaccgcct
ggctggcgctcctcttgcagtgggggcgtttgattaacctctctaattgc
attcggaggggtggggtgggggctcaccaggcgcaggggcttttagtgct
ggagctgcctatgaaaaacctcaattatcactaagaatggaaaatgttca
caacggataaatgcccttccgagttgagcgctgccttctcggcacagcac
acccgatctgggagacactattctacgcccctttcttctctgccccaagc
ccagtggctttctttcacttggctgtaggtgagccccttggccggcagcc
agctccactaaaacagctatttctctaactctgacactggatgctctaca
cggatgaagatgagacccgaaggctgagttgagaagtaaaaccaagatgg
agaaaggtactcagatgggacctgcccttggttggttgggattcactgtg
ggaggtagtttgatttaacctctctaattgcattcggaggggtggggtgg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108821390_108822528
seq2: B6Ng01-107N22.b_49_1175

seq1  GAATTCCAACAGCAAAGCCACATGGTGAACGTGCCGCCCCCTTCTGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAGCAAAGCCACATGGTGAACGTGCCGCCCCCTTCTGCTTT  50

seq1  TCCATTTGCCTCCCGACCTGCTTACCTCCTGACCTCTAAACCAGATCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGCCTCCCGACCTGCTTACCTCCTGACCTCTAAACCAGATCGAG  100

seq1  TCTCCTCTTCTTGCTAAAGCTGCTGTGATATATGATCCTCCCCATTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTCTTGCTAAAGCTGCTGTGATATATGATCCTCCCCATTTGAG  150

seq1  TTCCCAGAGGTCACCTCAGCTTGACTCCTAAGAGTACTTTCCCGTGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAGGTCACCTCAGCTTGACTCCTAAGAGTACTTTCCCGTGTTCT  200

seq1  CTCTCAAAGAACTGCAGCCATACCCTGCCCCCGTGATGCTATCTGCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAGAACTGCAGCCATACCCTGCCCCCGTGATGCTATCTGCACCC  250

seq1  TAACGAGATCTGCACTTGAGATAAAATATCCAGACTGCATGTTCCGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGAGATCTGCACTTGAGATAAAATATCCAGACTGCATGTTCCGTGTC  300

seq1  TGCCCTGAGCCATGTGAGGACCGGGGCTTTGGGGACATTGCTACATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGAGCCATGTGAGGACCGGGGCTTTGGGGACATTGCTACATCAAT  350

seq1  ATGTGCCCTGGGGACTCAATGTCTAATCAGGGAAATGAAAACACGACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCTGGGGACTCAATGTCTAATCAGGGAAATGAAAACACGACCAT  400

seq1  TTTGTTCCTGTTTCTTCTTAACCCTCCTGCTCTCCATCTGCTGAGGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTGTTTCTTCTTAACCCTCCTGCTCTCCATCTGCTGAGGGTCT  450

seq1  ATGCTTAGTGGCCAGGCACGGTTCATAATAACAAGAAAGTGGAAAGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGTGGCCAGGCACGGTTCATAATAACAAGAAAGTGGAAAGTGAA  500

seq1  AAGTGGAAAAGAGATCAAGACATTTGATATTTGGTCAGTTGGAGAGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAAAGAGATCAAGACATTTGATATTTGGTCAGTTGGAGAGATAG  550

seq1  ATTTTATGACAGGGAATGCCATCTTCTTTGAGGTCAAACCACAGGCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGACAGGGAATGCCATCTTCTTTGAGGTCAAACCACAGGCCCCA  600

seq1  GCATCCAGGGGATCCTCACACTGTAGATTCCAAGGAGAAGAGACACAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAGGGGATCCTCACACTGTAGATTCCAAGGAGAAGAGACACAATC  650

seq1  CTCTCCTGGCCTGAGTGCATTTCCTACACAGGATTTTTGATGGTAAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGCCTGAGTGCATTTCCTACACAGGATTTTTGATGGTAAGCCC  700

seq1  CCAGATGCCTCAGCCTGCACACCAGCTTGTCAGATCCACCTTGGGCGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCCTCAGCCTGCACACCAGCTTGTCAGATCCACCTTGGGCGGAG  750

seq1  AGGGGGAAATTCATCTTTATTTTCCCTCAAGAGAGAAGGAGGGGCAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAATTCATCTTTATTTTCCCTCAAGAGAGAAGGAGGGGCAGAGA  800

seq1  GAGGGGACAG-AAGGGTGGGTTTG-TTGGCTTGTTTGCATCCTATAAATA  848
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  GAGGGGACAGAAAGGGTGGGTTTGTTTGGCTTGTTTGCATCCTATAAATA  850

seq1  AAAATTCATCAAAGGATAAAAAAAAAATGATTCGTTTTCCGTGGAGATAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATCAAAGGATAAAAAAAAAATGATTCGTTTTCCGTGGAGATAC  900

seq1  TGCAGGCTCCTTGCCCGGTATCCAGATAAACATTGATTTAGGCAGATAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTCCTTGCCCGGTATCCAGATAAACATTGATTTAGGCAGATAGT  950

seq1  TTATGAATTATACAGTGGTTTTAAAAGTGGGGTGGCAAGGAAAATAGAAT  998
      |||||||||||||||||  |||||||||||||||||| ||||||||||||
seq2  TTATGAATTATACAGTG--TTTAAAAGTGGGGTGGCAGGGAAAATAGAAT  998

seq1  ATACCGTAGAACTTCGCATGGTTTCAGCCGATACAAATGAAGGATTCTGG  1048
      ||||||||| ||||||||| ||||||||||||||||||| |||| |||||
seq2  ATACCGTAG-ACTTCGCAT-GTTTCAGCCGATACAAATG-AGGA-TCTGG  1044

seq1  ATAGAATCCTGCCCCTCCTGTGCTTGAGATATCCCCACTTCAAAGGTGGC  1098
      | |||||| |||||   |||||| ||||||||||||| ||| ||||| ||
seq2  AAAGAATCTTGCCC--TCTGTGCCTGAGATATCCCCATTTC-AAGGT-GC  1090

seq1  CAGTCAGGACACCCTTTTTGGCGACTGCACGTTTAAAACCG  1139
      |||||||||| ||  ||| ||| ||||||||||  ||||||
seq2  CAGTCAGGACTCC--TTTGGGCAACTGCACGTT--AAACCG  1127

seq1: chr12_108980750_108981451
seq2: B6Ng01-107N22.g_67_769 (reverse)

seq1  CCCCCACCCCACCCCTCCGAATGCAATTAGAGAGGTT-AATCAAACTACC  49
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCCCACCCCACCCCTCCGAATGCAATTAGAGAGGTTAAATCAAACTACC  50

seq1  TCCCACAGTGAATCCCAACCAACCAAGGGCAGGTCCCATCTGAGTACCTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGTGAATCCCAACCAACCAAGGGCAGGTCCCATCTGAGTACCTT  100

seq1  TCTCCATCTTGGTTTTACTTCTCAACTCAGCCTTCGGGTCTCATCTTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTTGGTTTTACTTCTCAACTCAGCCTTCGGGTCTCATCTTCAT  150

seq1  CCGTGTAGAGCATCCAGTGTCAGAGTTAGAGAAATAGCTGTTTTAGTGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTAGAGCATCCAGTGTCAGAGTTAGAGAAATAGCTGTTTTAGTGGA  200

seq1  GCTGGCTGCCGGCCAAGGGGCTCACCTACAGCCAAGTGAAAGAAAGCCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGCCGGCCAAGGGGCTCACCTACAGCCAAGTGAAAGAAAGCCAC  250

seq1  TGGGCTTGGGGCAGAGAAGAAAGGGGCGTAGAATAGTGTCTCCCAGATCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGGGGCAGAGAAGAAAGGGGCGTAGAATAGTGTCTCCCAGATCG  300

seq1  GGTGTGCTGTGCCGAGAAGGCAGCGCTCAACTCGGAAGGGCATTTATCCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTGTGCCGAGAAGGCAGCGCTCAACTCGGAAGGGCATTTATCCG  350

seq1  TTGTGAACATTTTCCATTCTTAGTGATAATTGAGGTTTTTCATAGGCAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACATTTTCCATTCTTAGTGATAATTGAGGTTTTTCATAGGCAGC  400

seq1  TCCAGCACTAAAAGCCCCTGCGCCTGGTGAGCCCCCACCCCACCCCTCCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACTAAAAGCCCCTGCGCCTGGTGAGCCCCCACCCCACCCCTCCG  450

seq1  AATGCAATTAGAGAGGTTAATCAAACGCCCCCACTGCAAGAGGAGCGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATTAGAGAGGTTAATCAAACGCCCCCACTGCAAGAGGAGCGCCA  500

seq1  GCCAGGCGGTTTCTGCAGTTTTCAATCTAGAATCATTTGGGGACTTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCGGTTTCTGCAGTTTTCAATCTAGAATCATTTGGGGACTTTTTA  550

seq1  ATTGTTAGTTGGGTTTATTTATTGAACTTGGGCTTAAAAGAAAAATAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGTTGGGTTTATTTATTGAACTTGGGCTTAAAAGAAAAATAAAC  600

seq1  AGCAAAAAGGCAAGAGGTTGCTAGAGTCGCAAGAAGCCTGCGTGTGCGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAGGCAAGAGGTTGCTAGAGTCGCAAGAAGCCTGCGTGTGCGAT  650

seq1  TTAATAAAGTCTGTCCTTGTTAGCTCCCGCGGTTGCCAGATTCCAATGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAGTCTGTCCTTGTTAGCTCCCGCGGTTGCCAGATTCCAATGAA  700

seq1  TTC  702
      |||
seq2  TTC  703