BAC Information

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BAC

Clone NameB6Ng01-108E15
Chromosome12 (Build37)
Map Location 116,242,065 - 116,243,311
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3
Downstream geneEG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108E15.bB6Ng01-108E15.g
ACCDH915513DH915514
length1,2231,027
definitionDH915513|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E15, 5' end.DH915514|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagtctcagctttggattttcaattcaagtttctttggagaca
ggaaagatttgcatcccctcatcaggtgttcaccctgatgctctccttaa
gttttagaactcagaggaaccaatttgttataggaatcacaggagccctc
aagggagatcacctctgatacccttaaagagtaactaactgaagtccaga
gtcctcagaataaagcacttctaatgaatgctgtattgaagagaaagatt
gagaaaaccccttggtctaacgtgaagagtcttggctctgttcactcaac
ctgggagcattaccttttgtttttgcaggtagaacacgtgaagaactcaa
agcattgatgtttctccttcctttgtttttctgtgtgtatgaggccagaa
actgctacgtataatgtgagatgtgaatcttgtaaggacatattttcatt
cacacacacacaaacaaaaaataaatacggattctataaactccttgtag
agtttaagaatatgcatgacctgcatgctggcttctgtgaatgttataat
gatacagaagagagtgatgtttcattgactacagttagctgtcaatttcc
tgcctcacatttttctgatttctgtttactcaatagtcggtaccttcatc
tatatagtgaccactatttgtgaaaatattaaaagcagagaaatattgtt
tgttagttcacatctgtcagatgctaaacatcttagagaatggtacaatg
ggcagaagatgctggaagtcacgcactgggcctgggggattttcatcaat
atttcagagatgtttaatgcataatgtattctcctttgtttctgtaaata
attatctttagaacatagaattaataggaattgcctaaatttggacagct
ttcatagtgaatttttggtatgaacatgatgaatatatggaaatagttgt
gagttactactaatttcatcacaaagcagcatagagtacttattttatga
ataaaatatctttatatttaaaactttagaaagataagatattcaagtat
gcataaccatgaaatattgatcttaccacaagttgtagcacatttgtaaa
aagatgaaccagatggcgaggtgccagctgaaactctgacccctaagata
gaatgggccaaagagacctgcctaagtttcttttccaggtatacaatata
ggaattccttgatgcattctatg
gaattcatagatggattcagggtggggggcacatctgcaataaagactca
ttgttttcttgctgccctcagctgctctggcccaagtactgtctgatgta
ggcaacaaagaccctgatcgctcttgtttacaccttattaaaaatgggaa
ctgctagacctgtatccatctatcattaggaaagaggatgacactgagga
catcagtgatgataataaagaaacaacttaaattcagatgctgagaaacc
agtcatcttcaagagataaacaagagccatttctccctgtggctaaatcc
tgtaagcaccctctttgcagggatatgttactattcaattcagactggac
aacttagtgatgggaaatctatctgaagatgcattcatgaccagctgggg
tcaaaagggaaccaagaatctatttagtccccatactctatagtcattta
aacaacatagaacacccaagatacagtttgcaaaacacaagaaaatcaag
aagagggaagaaaaatgggtgggtacttcattcctccttagaattgggaa
caaaatacccatgaaaggagttacagaggcaaagtttggaacttagacga
aatgatggagtatccagagactaccccacctgggcatccatcccataatc
agccactaaacccagacactactgaatatgccaggaagattttcctgatg
ggaccctgttatagctgtctcatatgaggttatgccagtgagtggcaaat
atggacgtggatgctcacagtcatctataaaatggaatacagggcccaca
atggagaatctagagaaagcacccaagagctgaaggggtctgcaacccca
taggtggaacaatatatgaaataactagtacccccagagcacatatccct
agctgcatatgtaacagagatggcctagtcgacatcactgggaatagagt
cccttggtattgcaaactttatatgccccagtgtatggaaatgccaggcc
agaggagagtgggtggggtaggggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116242065_116243311
seq2: B6Ng01-108E15.b_46_1268

seq1  GAATTCAAAGTCTCAGCTTTGGATTTTCAATTCAAGTTTCTTTGGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCTCAGCTTTGGATTTTCAATTCAAGTTTCTTTGGAGACA  50

seq1  GGAAAGATTTGCATCCCCTCATCAGGTGTTCACCCTGATGCTCTCCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATTTGCATCCCCTCATCAGGTGTTCACCCTGATGCTCTCCTTAA  100

seq1  GTTTTAGAACTCAGAGGAACCAATTTGTTATAGGAATCACAGGAGCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAACTCAGAGGAACCAATTTGTTATAGGAATCACAGGAGCCCTC  150

seq1  AAGGGAGATCACCTCTGATACCCTTAAAGAGTAACTAACTGAAGTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGATCACCTCTGATACCCTTAAAGAGTAACTAACTGAAGTCCAGA  200

seq1  GTCCTCAGAATAAAGCACTTCTAATGAATGCTGTATTGAAGAGAAAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGAATAAAGCACTTCTAATGAATGCTGTATTGAAGAGAAAGATT  250

seq1  GAGAAAACCCCTTGGTCTAACGTGAAGAGTCTTGGCTCTGTTCACTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACCCCTTGGTCTAACGTGAAGAGTCTTGGCTCTGTTCACTCAAC  300

seq1  CTGGGAGCATTACCTTTTGTTTTTGCAGGTAGAACACGTGAAGAACTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGCATTACCTTTTGTTTTTGCAGGTAGAACACGTGAAGAACTCAA  350

seq1  AGCATTGATGTTTCTCCTTCCTTTGTTTTTCTGTGTGTATGAGGCCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGATGTTTCTCCTTCCTTTGTTTTTCTGTGTGTATGAGGCCAGAA  400

seq1  ACTGCTACGTATAATGTGAGATGTGAATCTTGTAAGGACATATTTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACGTATAATGTGAGATGTGAATCTTGTAAGGACATATTTTCATT  450

seq1  CACACACACACAAACAAAAAATAAATACGGATTCTATAAACTCCTTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAAACAAAAAATAAATACGGATTCTATAAACTCCTTGTAG  500

seq1  AGTTTAAGAATATGCATGACCTGCATGCTGGCTTCTGTGAATGTTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGAATATGCATGACCTGCATGCTGGCTTCTGTGAATGTTATAAT  550

seq1  GATACAGAAGAGAGTGATGTTTCATTGACTACAGTTAGCTGTCAATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGAAGAGAGTGATGTTTCATTGACTACAGTTAGCTGTCAATTTCC  600

seq1  TGCCTCACATTTTTCTGATTTCTGTTTACTCAATAGTCGGTACCTTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACATTTTTCTGATTTCTGTTTACTCAATAGTCGGTACCTTCATC  650

seq1  TATATAGTGACCACTATTTGTGAAAATATTAAAAGCAGAGAAATATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTGACCACTATTTGTGAAAATATTAAAAGCAGAGAAATATTGTT  700

seq1  TGTTAGTTCACATCTGTCAGATGCTAAACATCTTAGAGAATGGTACAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTCACATCTGTCAGATGCTAAACATCTTAGAGAATGGTACAATG  750

seq1  GGCAGAAGATGCTGGAAGTCACGCACTGGGCCTGGGGGATTTTCATCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGATGCTGGAAGTCACGCACTGGGCCTGGGGGATTTTCATCAAT  800

seq1  ATTTCAGAGATGTTTAATGCATAATGTATTCTCCTTTGTTTCTGTAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAGATGTTTAATGCATAATGTATTCTCCTTTGTTTCTGTAAATA  850

seq1  ATTATCTTTAGAACATAGAATTAATAGGAATTGCCTAAATTTGGACAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTTAGAACATAGAATTAATAGGAATTGCCTAAATTTGGACAGCT  900

seq1  TTCATAGTGAATTTTTGGTATGAACATGATTGAATATATGGAAATAGTTG  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCATAGTGAATTTTTGGTATGAACATGA-TGAATATATGGAAATAGTTG  949

seq1  TGAGTTAACTACTAATTTCATCAACAAAGCAGCAATAGAGTACTTATTTT  1000
      |||||| ||||||||||||||| |||||||||| ||||||||||||||||
seq2  TGAGTT-ACTACTAATTTCATC-ACAAAGCAGC-ATAGAGTACTTATTTT  996

seq1  ATGAATAAAATATCTTTATATTTAAAAACTTTAGAAAGATAAAGATATCA  1050
      ||||||||||||||||||||||| |||||||||||||||| |||||||  
seq2  ATGAATAAAATATCTTTATATTT-AAAACTTTAGAAAGAT-AAGATATTC  1044

seq1  AGGTATGCATAAACCATGAAATA-TGATCTTACCACAAAGTTGTAGCAAC  1099
      | |||||||| |||||||||||| |||||||||||| |||||||||||  
seq2  AAGTATGCAT-AACCATGAAATATTGATCTTACCAC-AAGTTGTAGCACA  1092

seq1  ATTGTAAAAAGAAATGAAACCCAGAATGCCGA-GTGCCAGCTGAGACTCT  1148
       ||||||||||  |||||  |||| ||| ||| ||||||||||| |||||
seq2  TTTGTAAAAAG--ATGAA--CCAG-ATGGCGAGGTGCCAGCTGAAACTCT  1137

seq1  GAACCCCTAGAGTAGGATGGG-CAATAAGACCTGCATTAAATGTCCTTTT  1197
      | |||||||   ||| ||||| |||  ||||||||  ||| | ||  |||
seq2  G-ACCCCTAAGATAGAATGGGCCAAAGAGACCTGC-CTAAGTTTC--TTT  1183

seq1  CCCAGGGTTATCAATATTATAGGAATTTTCACCTATGATTGCATTCTATG  1247
       |||||  |||  | | ||||||||||    ||| ||| |||||||||||
seq2  TCCAGG--TAT--ACAATATAGGAATT----CCT-TGA-TGCATTCTATG  1223