BAC Information

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BAC

Clone NameB6Ng01-108J07
Chromosome12 (Build37)
Map Location 18,126,448 - 18,345,774
singlet/doubletdoublet
Overlap geneLOC100042573, LOC668539, LOC100043324, LOC636282, EG632781
Upstream geneKcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297
Downstream geneLOC668541, LOC673160, 5730507C01Rik, EG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108J07.bB6Ng01-108J07.g
ACCDH915730DH915731
length1,0911,150
definitionDH915730|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J07, 5' end.DH915731|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,344,675 - 18,345,774)(18,126,448 - 18,127,607)
sequence
gaattcttccagggacattttgcctgaggaatggaagagggagacttagg
attaaccagttttctggttaaagtctggaaccctctgtaaaatcgacaat
gtccagtctcctctctctctgtctctctgtctctctgtctctctgtctct
ctgtctctctgtctctgtctctctgtctctgtctctctgtctctgtctct
ctctctcaaagtctggaaccctctggaaaatggacaatgtccagtctcct
ctctctctctctctgtctctctctatgtctctctgtctctctctcacaca
cacacacaaacacacacacagacacagacacacagacacacagacacaca
gacacacacacacacacacacacacacacacaccacacatatattgggac
atatgccattttgaggcacacaagtggtcagaggacaacttgtaagagct
ggttctcctttcaaggtgtaggtcatggggattgagcattagtcatgagg
ttaggtttggtaatgaactctggggcctgaagtaagctgatagccccacc
tagaggcctggagagccaccacgatctggggcagctggggagaaaggaca
aattatggctgcaggtcaaattacatttctgttactgtgataaaaatccc
ctgactaaaagcaacttaagggaggaagttttctttggtttacttctagg
ttacaattcatcacttcaggaagtcaaggctttaaaacctcacagggcag
agagaatagaggtatgagcacctggctcataatgagactctgcacttttt
tctgatgctcttctcttccctttattacactgctcagaccccctgtctag
agaatagtaatggggtttcccacatcaattaaccaataacacaaccccca
acaggcatgctcatagactgccatgatctagatggatggttctcagcctt
cctaatgctgtgaccctttgatagagttccttgtgttgtagtgaccctca
accaaaagatatttcactgctacttcataccataattacactgttgttat
gatctgatatgaaaatttttgtttcttgtcttatgccacct
gaattccactgcactgagaaaacagtctgtagggactaggtcgcctctgt
gatttgggcattgcttccacttacaggtagctcagaatcctacaagcaaa
tccctctgcctcaaacacataccaggagagcaaaggagtgatccaagcat
ggatgttagacactttcagctccactggggacgcttttggtcttaaaaat
atttctcattatatttgtgtgagcatgcactgatgtggaaatcagagggc
actctgcaggacttggttctctcttctaccacgttggttttgagaactga
acttaggtcaccaggctttgtgtttccctactttttggccatgtttattc
tcgagtcattattttgtagacggatcctcagaggtttgctggattgtggg
ctctggaatgggctcactgttcacttacctccaagaatgaccccatgcct
gcctacactcataaagaaattcccaacactctggctttgagcttctccac
ctaactgccacataaagcttcagaattttgtttgatggaaaatcctggaa
atcctattaagcatacaagctacctgagctcctctcctgaagactaattt
taaaggtctaaataaggcctcccagaatctagatttggaaaatgaggtca
gggcaagtgtacttattgggcaagcatgacttgagttcaaagcctagcac
acatgtggagaggaattttaattcagcagcatggcagctctggcacggga
tcatatccaaagacatgatcatggcttggaccatggtcattgcaaccata
gccccagtaggtgagaaaagatgctgaggactgaacctatggcaacccag
gagtgcagaggcctaggctggccatgagaaagacacagcattctgaacag
gtggagaggggaggttttgctggagtattctgtgtgttggagttcatagc
ccatccttggataatacttctgaaaaacgtggggctgttgttgatggatg
gatcctgaggtgagcaccccacatggcagttcccatcgttttgtaacttt
agctcaggagatcgacactcctacacaagacattcctgcagtgaaataca
tggcttagaatgaaaacgaatattttctttaaaaaaagaaactattgtgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_18344675_18345774
seq2: B6Ng01-108J07.b_48_1138 (reverse)

seq1  AGGTGGCATAAGACCAACAGAAAACACAAATTTTCATATTCAGATTCATA  50
      ||||||||||||    |||  ||||| ||||||||||| ||||| |||||
seq2  AGGTGGCATAAG----ACAAGAAACAAAAATTTTCATA-TCAGA-TCATA  44

seq1  ACAACAGTGTAATTATGGTTATGAAGTAGCAGTGAAAATAATCTTTTGGT  100
      |||||||||||||||||| ||||||||||||||||||   ||||||||||
seq2  ACAACAGTGTAATTATGG-TATGAAGTAGCAGTGAAA--TATCTTTTGGT  91

seq1  TGAGGGTCACTACAACACAAGGAACTCTATCAAAGGGTCACAGCATTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCACTACAACACAAGGAACTCTATCAAAGGGTCACAGCATTAGG  141

seq1  AAGGCTGAGAACCATCCATCTAGATCATGGCAGTCTATGAGCATGCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGAACCATCCATCTAGATCATGGCAGTCTATGAGCATGCCTGT  191

seq1  TGGGGGTTGTGTTATTGGTTAATTGATGTGGGAAACCCCATTACTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTGTGTTATTGGTTAATTGATGTGGGAAACCCCATTACTATTCT  241

seq1  CTAGACAGGGGGTCTGAGCAGTGTAATAAAGGGAAGAGAAGAGCATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGGGGGTCTGAGCAGTGTAATAAAGGGAAGAGAAGAGCATCAGA  291

seq1  AAAAAGTGCAGAGTCTCATTATGAGCCAGGTGCTCATACCTCTATTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGCAGAGTCTCATTATGAGCCAGGTGCTCATACCTCTATTCTCT  341

seq1  CTGCCCTGTGAGGTTTTAAAGCCTTGACTTCCTGAAGTGATGAATTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTGAGGTTTTAAAGCCTTGACTTCCTGAAGTGATGAATTGTAA  391

seq1  CCTAGAAGTAAACCAAAGAAAACTTCCTCCCTTAAGTTGCTTTTAGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGTAAACCAAAGAAAACTTCCTCCCTTAAGTTGCTTTTAGTCAG  441

seq1  GGGATTTTTATCACAGTAACAGAAATGTAATTTGACCTGCAGCCATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTATCACAGTAACAGAAATGTAATTTGACCTGCAGCCATAATT  491

seq1  TGTCCTTTCTCCCCAGCTGCCCCAGATCGTGGTGGCTCTCCAGGCCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCTCCCCAGCTGCCCCAGATCGTGGTGGCTCTCCAGGCCTCTA  541

seq1  GGTGGGGCTATCAGCTTACTTCAGGCCCCAGAGTTCATTACCAAACCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCTATCAGCTTACTTCAGGCCCCAGAGTTCATTACCAAACCTAA  591

seq1  CCTCATGACTAATGCTCAATCCCCATGACCTACACCTTGAAAGGAGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGACTAATGCTCAATCCCCATGACCTACACCTTGAAAGGAGAACC  641

seq1  AGCTCTTACAAGTTGTCCTCTGACCACTTGTGTGCCTCAAAATGGCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTACAAGTTGTCCTCTGACCACTTGTGTGCCTCAAAATGGCATAT  691

seq1  GTCCCAATATATGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAATATATGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC  741

seq1  TGTGTGTCTGTGTGTCTGTGTGTCTGTGTCTGTGTGTGTGTTTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGTGTGTCTGTGTGTCTGTGTCTGTGTGTGTGTTTGTGTGTG  791

seq1  TGTGTGAGAGAGAGACAGAGAGACATAGAGAGAGACAGAGAGAGAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGAGAGAGACAGAGAGACATAGAGAGAGACAGAGAGAGAGAGAG  841

seq1  AGGAGACTGGACATTGTCCATTTTCCAGAGGGTTCCAGACTTTGAGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGGACATTGTCCATTTTCCAGAGGGTTCCAGACTTTGAGAGAG  891

seq1  AGAGACAGAGACAGAGAGACAGAGACAGAGAGACAGAGACAGAGAGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGAGACAGAGACAGAGAGACAGAGACAGAGAGACAG  941

seq1  AGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGAGAGGAGACTGGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGAGAGGAGACTGGAC  991

seq1  ATTGTCGATTTTACAGAGGGTTCCAGACTTTAACCAGAAAACTGGTTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCGATTTTACAGAGGGTTCCAGACTTTAACCAGAAAACTGGTTAAT  1041

seq1  CCTAAGTCTCCCTCTTCCATTCCTCAGGCAAAATGTCCCTGGAAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTCTCCCTCTTCCATTCCTCAGGCAAAATGTCCCTGGAAGAATTC  1091

seq1: chr12_18126448_18127607
seq2: B6Ng01-108J07.g_67_1216

seq1  GAATTCCACTGCACTGAGAAAACAGTCTGTAGGGACTAGGTCGCCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCACTGAGAAAACAGTCTGTAGGGACTAGGTCGCCTCTGT  50

seq1  GATTTGGGCATTGCTTCCACTTACAGGTAGCTCAGAATCCTACAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGCATTGCTTCCACTTACAGGTAGCTCAGAATCCTACAAGCAAA  100

seq1  TCCCTCTGCCTCAAACACATACCAGGAGAGCAAAGGAGTGATCCAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCCTCAAACACATACCAGGAGAGCAAAGGAGTGATCCAAGCAT  150

seq1  GGATGTTAGACACTTTCAGCTCCACTGGGGACGCTTTTGGTCTTAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTAGACACTTTCAGCTCCACTGGGGACGCTTTTGGTCTTAAAAAT  200

seq1  ATTTCTCATTATATTTGTGTGAGCATGCACTGATGTGGAAATCAGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATTATATTTGTGTGAGCATGCACTGATGTGGAAATCAGAGGGC  250

seq1  ACTCTGCAGGACTTGGTTCTCTCTTCTACCACGTTGGTTTTGAGAACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGGACTTGGTTCTCTCTTCTACCACGTTGGTTTTGAGAACTGA  300

seq1  ACTTAGGTCACCAGGCTTTGTGTTTCCCTACTTTTTGGCCATGTTTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTCACCAGGCTTTGTGTTTCCCTACTTTTTGGCCATGTTTATTC  350

seq1  TCGAGTCATTATTTTGTAGACGGATCCTCAGAGGTTTGCTGGATTGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTCATTATTTTGTAGACGGATCCTCAGAGGTTTGCTGGATTGTGGG  400

seq1  CTCTGGAATGGGCTCACTGTTCACTTACCTCCAAGAATGACCCCATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATGGGCTCACTGTTCACTTACCTCCAAGAATGACCCCATGCCT  450

seq1  GCCTACACTCATAAAGAAATTCCCAACACTCTGGCTTTGAGCTTCTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACACTCATAAAGAAATTCCCAACACTCTGGCTTTGAGCTTCTCCAC  500

seq1  CTAACTGCCACATAAAGCTTCAGAATTTTGTTTGATGGAAAATCCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCCACATAAAGCTTCAGAATTTTGTTTGATGGAAAATCCTGGAA  550

seq1  ATCCTATTAAGCATACAAGCTACCTGAGCTCCTCTCCTGAAGACTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTAAGCATACAAGCTACCTGAGCTCCTCTCCTGAAGACTAATTT  600

seq1  TAAAGGTCTAAATAAGGCCTCCCAGAATCTAGATTTGGAAAATGAGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTCTAAATAAGGCCTCCCAGAATCTAGATTTGGAAAATGAGGTCA  650

seq1  GGGCAAGTGTACTTATTGGGCAAGCATGACTTGAGTTCAAAGCCTAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTGTACTTATTGGGCAAGCATGACTTGAGTTCAAAGCCTAGCAC  700

seq1  ACATGTGGAGAGGAATTTTAATTCAGCAGCATGGCAGCTCTGGCACGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGAGAGGAATTTTAATTCAGCAGCATGGCAGCTCTGGCACGGGA  750

seq1  TCATATCCAAAGACATGATCATGGCTTGGACCATGGTCATTGCAACCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCAAAGACATGATCATGGCTTGGACCATGGTCATTGCAACCATA  800

seq1  GCCCCAGTAGGTGAGAAAAGATGCTGAGGACTGAACCTATGGCAACCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTAGGTGAGAAAAGATGCTGAGGACTGAACCTATGGCAACCCAG  850

seq1  GAGTGCAGAGGCCTAGGCTGGCCATGAGAAAAGACACAGCATTCTGAACA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGTGCAGAGGCCTAGGCTGGCCATGAG-AAAGACACAGCATTCTGAACA  899

seq1  GGTGGAGAGGGGAGGTTTTGCTGGAGTATTCTGTGTGTTGGAGTTCATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAGGGGAGGTTTTGCTGGAGTATTCTGTGTGTTGGAGTTCATAG  949

seq1  CCCATCCTTGGATAATACTTCTGAAATAACGTGGGGCTGTTGTTGATGGA  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CCCATCCTTGGATAATACTTCTGAAA-AACGTGGGGCTGTTGTTGATGG-  997

seq1  ATGAATCCTGAGGTGAGCA-CCCACATGGCAGTTCACAGCTGTCTGTAAC  1049
      ||| ||||||||||||||| ||||||||||||||| || |  | ||||||
seq2  ATGGATCCTGAGGTGAGCACCCCACATGGCAGTTCCCATCGTTTTGTAAC  1047

seq1  TCTAGCTCAAGGAGATCGGACA-TCCTAACAC-AGACATTCATGCAGGTG  1097
      | |||||| |||||||| |||| |||| |||| |||||||| |||| |||
seq2  TTTAGCTC-AGGAGATC-GACACTCCT-ACACAAGACATTCCTGCA-GTG  1093

seq1  AAATACCAGTGCACTAGAATGAAAACGAATATTTTCTTTAAAAAAAAAAG  1147
      ||||||   ||   ||||||||||||||||||||||||||||||||    
seq2  AAATAC--ATGGCTTAGAATGAAAACGAATATTTTCTTTAAAAAAA----  1137

seq1  AAAACTATTGTGG  1160
       ||||||||||||
seq2  GAAACTATTGTGG  1150