BAC Information

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BAC

Clone NameB6Ng01-109N01
Chromosome12 (Build37)
Map Location 93,147,124 - 93,300,156
singlet/doubletdoublet
Overlap geneLOC667589, LOC100039387
Upstream gene4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681
Downstream geneLOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109N01.bB6Ng01-109N01.g
ACCDH916617DH916618
length1,1951,075
definitionDH916617|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N01, 5' end.DH916618|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,298,932 - 93,300,156)(93,147,124 - 93,148,208)
sequence
gaattcttccccttcagaaacacaagaatgaaaactgctggtggtgtcca
gacttggggaaactagagaccttcctataacatctccatgcaaaaagagc
accaccatcttcttgagccaacaccagagaagacatatttgaatattctt
cttgtataggtctaatgttgctttgagaccccaaagtcacaaaaggaatt
agttctatccctgtattttctaatgacataatataagcacatatattttt
tgctattacccagaatagttacatcaataaataagtcatggttactttat
aaaataaaattaattgagagccaggcagtggctagcacatcccctttaat
cccaacacttgggacgcagagacaggtagaacgctgagttatagaccagc
ctgggctatagagtgagttccaggacagccaaggctacacagaaaaaccc
tatctcaaaacaaacaaacaaacaaacaaacaaacaataaataaataaat
aaataaatagattgaaagtttaccattaattacaacagtataggccagaa
tgatggcaaatacaactaattttctgaaacagcaacaacaaaagtaaact
aaaaaaaaaatcaattattcaagtactattcagagtactttatttttaat
ttatactttttctatgatgtttaaagcgaaacccagggccatacaacccc
tctagcactaaactatatccatagccatttatttgtctatcaatacatgc
tgatcaaactgaaaggatgatatatcactaatatcacattgaacacacaa
atggactcattcacaaatcacacctaacatgaagggtctgcagtgatttt
agcgcagtacaaccttcctctctccactcttctgagacgggacatacatc
aattatagttcaaattaacgtccctttcaacctctcttctgtttgccttc
caagcccagtaacaccaaaactcctcagtcacaaaatacttccagcagag
agtgcccatcagccctgatacctttctcactgcagatatagaacatgact
tctggggcacttccatcattctattaaattatctccaagctgttcagcca
ctcatttttctctctattgagagtgccatgttatgggggcgtgggtagcc
tagacttaaaaggatggaaacttgactggaagggcctgggagggg
gaattccaccatgccttccccaccaccatggactgtgagcccttcaacca
tgatccaaaataaatttcttctccctttatttacatttattaggttacaa
tgaccaattcagtcttctactcagatctactgctattggaaaataacaag
aggcctcttgcaccacctcctactgcatttgtgacatgctgggtatttct
gtatggctgaatggctggtattatgaaggctaagaagctgatttttgttc
ctcttgggtagagagctcctttggaggcccatcgagctaactcgcagacc
aaaggagaaccagagctatttactgcagctgtgttcactcagcccgctgc
tgagagaatttgacatgttcccctgtttaaccttccagaagtgtcctcac
cttcaatttctacctgggtcttgaaaaacgtttcatttggatctctgtgc
agggctgttttcccagtgggctcaggccacatctctcattagtccccctt
gctgatcttcacagtaaagggcgtgcccactaaggtctctgggtaaagac
tgttcagggctcagagctctaaaggggcaggtttggctccacaggataaa
ttgttccttgacctcaatttttacaccctgtaactgtgggctgaggggag
tgggagataatgtcgactctggagtcccgccagcaggaagtgtggaaagc
tgggaaattactctacctctgagctctccatagaattatcaaacatgctc
tttggcagcggctgggtgttcacatgaaagaaaggggttggaggaagggg
caatgatgcttggtgaataatacttgttatacagctgtaggggagacacc
tttgcctatcatgaaagcctcagtgttcccattccctcttccttgtaatt
actcagtatctgtggcttaatagaccagcagtgcctgcggagcatgggct
caaatatgagacctgcattccttgacccaggttgttggagcgatgacttc
caaagtgaatgttcattggcgactgacaagcctttttcttttcttttctt
tctttaaaaggatctatgtacaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93298932_93300156
seq2: B6Ng01-109N01.b_49_1243 (reverse)

seq1  CCCCTCCCAGGCCCTCTCAGTCCAAAGTTTCCATTCCTCTTATAGTCTAT  50
      |||||||||||||||  |||||  ||||||||| |||| ||| |||||| 
seq2  CCCCTCCCAGGCCCTTCCAGTC--AAGTTTCCA-TCCTTTTA-AGTCTAG  46

seq1  GCTTACCCCACGCCCCCAATACACTGGCACTCTCTATAGGAGGAAGGAAA  100
      |||   ||||||||||||  ||| |||||||||| ||||       || |
seq2  GCT--ACCCACGCCCCCATAACA-TGGCACTCTCAATAG------AGAGA  87

seq1  AAAATGAGTGGCTTGACAGCTTTGGAGGATAAATTTAATAGAAATTGATG  150
      |||||||||||||  ||||| ||||| ||| ||||||||||||  |||||
seq2  AAAATGAGTGGCTGAACAGC-TTGGA-GAT-AATTTAATAGAA--TGATG  132

seq1  GAAGTGCCCCAAGAAAGTCATGTTCTATTATTCTTGCAGTGAGAAAGGTT  200
      |||||||||||   ||||||||||||| |||   |||||||||||||| |
seq2  GAAGTGCCCCA--GAAGTCATGTTCTA-TAT--CTGCAGTGAGAAAGG-T  176

seq1  ATCAGGGCTTGATGGGGCCACCTTCTCTTGCTGG-AGTATTTTGTGACTG  249
      |||||||| |||||||  |||  |||| |||||| |||||||||||||||
seq2  ATCAGGGC-TGATGGG--CAC--TCTC-TGCTGGAAGTATTTTGTGACTG  220

seq1  AGGAGTTTTGGTGTTTACTGGGCTTGGAAGGCAAACAGAAGAGAGGTTGA  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTTGGTG-TTACTGGGCTTGGAAGGCAAACAGAAGAGAGGTTGA  269

seq1  AAGGGACGTTAATTTGAACTATAATTGATGTATGTCCCGTCTCAGAAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACGTTAATTTGAACTATAATTGATGTATGTCCCGTCTCAGAAGAG  319

seq1  TGGAGAGAGGAAGGTTGTACTGCGCTAAAATCACTGCAGACCCTTCATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAGGAAGGTTGTACTGCGCTAAAATCACTGCAGACCCTTCATGT  369

seq1  TAGGTGTGATTTGTGAATGAGTCCATTTGTGTGTTCAATGTGATATTAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGATTTGTGAATGAGTCCATTTGTGTGTTCAATGTGATATTAGT  419

seq1  GATATATCATCCTTTCAGTTTGATCAGCATGTATTGATAGACAAATAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATCATCCTTTCAGTTTGATCAGCATGTATTGATAGACAAATAAAT  469

seq1  GGCTATGGATATAGTTTAGTGCTAGAGGGGTTGTATGGCCCTGGGTTTCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGGATATAGTTTAGTGCTAGAGGGGTTGTATGGCCCTGGGTTTCG  519

seq1  CTTTAAACATCATAGAAAAAGTATAAATTAAAAATAAAGTACTCTGAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACATCATAGAAAAAGTATAAATTAAAAATAAAGTACTCTGAATA  569

seq1  GTACTTGAATAATTGATTTTTTTTTTAGTTTACTTTTGTTGTTGCTGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGAATAATTGATTTTTTTTTTAGTTTACTTTTGTTGTTGCTGTTT  619

seq1  CAGAAAATTAGTTGTATTTGCCATCATTCTGGCCTATACTGTTGTAATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTAGTTGTATTTGCCATCATTCTGGCCTATACTGTTGTAATTA  669

seq1  ATGGTAAACTTTCAATCTATTTATTTATTTATTTATTTATTGTTTGTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAACTTTCAATCTATTTATTTATTTATTTATTTATTGTTTGTTTG  719

seq1  TTTGTTTGTTTGTTTGTTTTGAGATAGGGTTTTTCTGTGTAGCCTTGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTTGAGATAGGGTTTTTCTGTGTAGCCTTGGCT  769

seq1  GTCCTGGAACTCACTCTATAGCCCAGGCTGGTCTATAACTCAGCGTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTCTATAGCCCAGGCTGGTCTATAACTCAGCGTTCTA  819

seq1  CCTGTCTCTGCGTCCCAAGTGTTGGGATTAAAGGGGATGTGCTAGCCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTGCGTCCCAAGTGTTGGGATTAAAGGGGATGTGCTAGCCACT  869

seq1  GCCTGGCTCTCAATTAATTTTATTTTATAAAGTAACCATGACTTATTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTCTCAATTAATTTTATTTTATAAAGTAACCATGACTTATTTAT  919

seq1  TGATGTAACTATTCTGGGTAATAGCAAAAAATATATGTGCTTATATTATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAACTATTCTGGGTAATAGCAAAAAATATATGTGCTTATATTATG  969

seq1  TCATTAGAAAATACAGGGATAGAACTAATTCCTTTTGTGACTTTGGGGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGAAAATACAGGGATAGAACTAATTCCTTTTGTGACTTTGGGGTC  1019

seq1  TCAAAGCAACATTAGACCTATACAAGAAGAATATTCAAATATGTCTTCTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAACATTAGACCTATACAAGAAGAATATTCAAATATGTCTTCTC  1069

seq1  TGGTGTTGGCTCAAGAAGATGGTGGTGCTCTTTTTGCATGGAGATGTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGGCTCAAGAAGATGGTGGTGCTCTTTTTGCATGGAGATGTTAT  1119

seq1  AGGAAGGTCTCTAGTTTCCCCAAGTCTGGACACCACCAGCAGTTTTCATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTCTCTAGTTTCCCCAAGTCTGGACACCACCAGCAGTTTTCATT  1169

seq1  CTTGTGTTTCTGAAGGGGAAGAATTC  1225
      ||||||||||||||||||||||||||
seq2  CTTGTGTTTCTGAAGGGGAAGAATTC  1195

seq1: chr12_93147124_93148208
seq2: B6Ng01-109N01.g_65_1139

seq1  GAATTCCACCATGCCTTCCCCACCACCATGGACTGTGAGCCCTTCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCATGCCTTCCCCACCACCATGGACTGTGAGCCCTTCAACCA  50

seq1  TGATCCAAAATAAATTTCTTCTCCCTTTATTTACATTTATTAGGTTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAAAATAAATTTCTTCTCCCTTTATTTACATTTATTAGGTTACAA  100

seq1  TGACCAATTCAGTCTTCTACTCAGATCTACTGCTATTGGAAAATAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAATTCAGTCTTCTACTCAGATCTACTGCTATTGGAAAATAACAAG  150

seq1  AGGCCTCTTGCACCACCTCCTACTGCATTTGTGACATGCTGGGTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTTGCACCACCTCCTACTGCATTTGTGACATGCTGGGTATTTCT  200

seq1  GTATGGCTGAATGGCTGGTATTATGAAGGCTAAGAAGCTGATTTTTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCTGAATGGCTGGTATTATGAAGGCTAAGAAGCTGATTTTTGTTC  250

seq1  CTCTTGGGTAGAGAGCTCCTTTGGAGGCCCATCGAGCTAACTCGCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGTAGAGAGCTCCTTTGGAGGCCCATCGAGCTAACTCGCAGACC  300

seq1  AAAGGAGAACCAGAGCTATTTACTGCAGCTGTGTTCACTCAGCCCGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAACCAGAGCTATTTACTGCAGCTGTGTTCACTCAGCCCGCTGC  350

seq1  TGAGAGAATTTGACATGTTCCCCTGTTTAACCTTCCAGAAGTGTCCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAATTTGACATGTTCCCCTGTTTAACCTTCCAGAAGTGTCCTCAC  400

seq1  CTTCAATTTCTACCTGGGTCTTGAAAAACGTTTCATTTGGATCTCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTCTACCTGGGTCTTGAAAAACGTTTCATTTGGATCTCTGTGC  450

seq1  AGGGCTGTTTTCCCAGTGGGCTCAGGCCACATCTCTCATTAGTCCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTTTTCCCAGTGGGCTCAGGCCACATCTCTCATTAGTCCCCCTT  500

seq1  GCTGATCTTCACAGTAAAGGGCGTGCCCACTAAGGTCTCTGGGTAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTTCACAGTAAAGGGCGTGCCCACTAAGGTCTCTGGGTAAAGAC  550

seq1  TGTTCAGGGCTCAGAGCTCTAAAGGGGCAGGTTTGGCTCCACAGGATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGGCTCAGAGCTCTAAAGGGGCAGGTTTGGCTCCACAGGATAAA  600

seq1  TTGTTCCTTGACCTCAATTTTTACACCCTGTAACTGTGGGCTGAGGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTTGACCTCAATTTTTACACCCTGTAACTGTGGGCTGAGGGGAG  650

seq1  TGGGAGATAATGTCGACTCTGGAGTCCCGCCAGCAGGAAGTGTGGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATAATGTCGACTCTGGAGTCCCGCCAGCAGGAAGTGTGGAAAGC  700

seq1  TGGGAAATTACTCTACCTCTGAGCTCTCCATAGAATTATCAAACATGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATTACTCTACCTCTGAGCTCTCCATAGAATTATCAAACATGCTC  750

seq1  TTTGGCAGCGGCTGGGTGTTCACATGAAAG-AAGGGGTTGGAGGAAGGGG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTGGCAGCGGCTGGGTGTTCACATGAAAGAAAGGGGTTGGAGGAAGGGG  800

seq1  CAATGATGCTTGGTGAATAATACTTGTTATACAGCTGTAGGGGAGACACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGCTTGGTGAATAATACTTGTTATACAGCTGTAGGGGAGACACC  850

seq1  TTTGCCTATCATGAAAGCCTCAGGTGTTCCCATTCCCTCTTCCTTGTAAT  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGCCTATCATGAAAGCCTCA-GTGTTCCCATTCCCTCTTCCTTGTAAT  899

seq1  TACTCAGTATCTGTGGCTTAATAGACCAGCAGTGCCTGCGGAGCATGGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTATCTGTGGCTTAATAGACCAGCAGTGCCTGCGGAGCATGGGC  949

seq1  TCAAATATGAGACCTGCATTCCTTGACCCAGGTTGTTGGAGCGATGACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATGAGACCTGCATTCCTTGACCCAGGTTGTTGGAGCGATGACTT  999

seq1  CCAAAGGTGAATGTTTCATTGAGCGACTGACAAAGCTTTTTTTCTTTTTC  1049
      ||||| ||||||| ||||||| |||||||||||  ||||||    |||||
seq2  CCAAA-GTGAATG-TTCATTG-GCGACTGACAAGCCTTTTT---CTTTTC  1043

seq1  TTTTTCTTTTCTTTTAAAAAGGGTCTATGTACAATT  1085
      ||||   |||||||  |||||| |||||||||||||
seq2  TTTT--CTTTCTTT--AAAAGGATCTATGTACAATT  1075