BAC Information

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BAC

Clone NameB6Ng01-109N12
Chromosome12 (Build37)
Map Location 79,515,805 - 79,639,180
singlet/doubletdoublet
Overlap geneGphn
Upstream geneFut8, LOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109N12.bB6Ng01-109N12.g
ACCDH916637DH916638
length1,134903
definitionDH916637|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N12, 5' end.DH916638|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,515,805 - 79,516,941)(79,638,278 - 79,639,180)
sequence
gaattctgcatggagaatcaaggactatatttgtgttatacaatggtcta
gtcatttaaccagtttaatctccttaaaatgagggaaattgaattctcta
tttcccagtgttctatgtacatttatttttaaagatttattttcattacc
tatgtgtatagatatgtggggtatataggaatataaacaatgcagatgct
taccgaattcagaagagggtgtcagtcagatctcctggatctctaataat
gggcatttgcgagatacttgatgtgggtgctaggactaaacgctaaaaca
tctcttcaccccagcttttcttcatttgttttaaaagctaatatacaaaa
aaatatggtattttcatgatacaatgtttcggttaatcctcttctatttc
actctctagttgtctatctgccccaacccttctgccttgcagttcatgtc
acatgcactcgattgttttctgttatcctattcatccccttcgctttaaa
tctccccctctttgaaactctttctctttcgatgacctatacttacactt
actttcatgtaattatgcataattaaaatgtaagaagctgtgaactttca
gtgaagaccactgctaacatttcatatgagtgtacttaaaatggctaaac
attttcttttatgtgctcccaagttgtagggaatgttctttttaatgtaa
ctaccaaacaaacaaatttaatcttataacttgttcaggatctatctatg
aaatctttaaaattctgtcaaattggttttacctaccaaacattatcttt
gttcctttccacctttatataaatataattctgctatcataatattttta
tttcctccttttggtgctatttattgataagattctcactgtgacttatt
tgtgtttcatatatcagaaattgagcagcattttattcttaagtgttatt
caactactttaaaatcatgagtgtgtttttaattttgtatgcatatactt
agtacctctggatagcattaagcttacaatctatgtaagtgttcagtatc
tgtttttttaaagcagtgatttatccaaattatgtataactgcctcttta
atgtttatacgggtttatatttttcatgtagagc
gaattctgtagtatttaaagtagaactgtctttttcacctactagaattt
actatttgtatgtaatttgagtgaaatttgtttgcaaaagcttccaaatg
ttattcagtcaaaatttatttagatcatgtcttagaagtcaacatgtaga
agtcaaagaacaactctcatgttagggtttagtagctgaagattattagc
attaaaaataaatattaataaatttcagtctgtctactcaacaagaaaga
aataacttcaatgtttccaacaaaatcaatcaactctactatgtacaaat
ctgggacattaaaagagagctttttttttttctttctctttttttaaaaa
gatttatctatttattaagtgttctgcctgcatttatgcctgcaagccag
gagagggcactagtcctcattacagatggttgtgagccaccatgtggttg
ctgggaattgaactcatgacctctggaagagcagactgtgctctgagcca
tctctccagccccaaaagagagctataaagggttcaattttgactataaa
agtaaaataagatgaatgtttattttatttttgagatattgtgatacaat
ctactatatttctactatattttactatttttgagacagggcattactat
gtagtataggctgtcttagagcttagtcggtagactaggctgttcttgaa
ctcacaaagattcacctgcttctgcctcctgaatgctggtatgtaaggca
tggggcagaacacatttcttaaatagatcagaatgaacacgatttctacc
aggggatagtgcttttggcttttgtttaaaataagtaaattccaaagcaa
tatttaaaaaatgtgagcatgtgtgggagcatgagagggggggaagaggg
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79515805_79516941
seq2: B6Ng01-109N12.b_50_1183

seq1  GAATTCTGCATGGAGAATCAAGGACTATATTTGTGTTATACAATGGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGGAGAATCAAGGACTATATTTGTGTTATACAATGGTCTA  50

seq1  GTCATTTAACCAGTTTAATCTCCTTAAAATGAGGGAAATTGAATTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAACCAGTTTAATCTCCTTAAAATGAGGGAAATTGAATTCTCTA  100

seq1  TTTCCCAGTGTTCTATGTACATTTATTTTTAAAGATTTATTTTCATTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTGTTCTATGTACATTTATTTTTAAAGATTTATTTTCATTACC  150

seq1  TATGTGTATAGATATGTGGGGTATATAGGAATATAAACAATGCAGATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATAGATATGTGGGGTATATAGGAATATAAACAATGCAGATGCT  200

seq1  TACCGAATTCAGAAGAGGGTGTCAGTCAGATCTCCTGGATCTCTAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAATTCAGAAGAGGGTGTCAGTCAGATCTCCTGGATCTCTAATAAT  250

seq1  GGGCATTTGCGAGATACTTGATGTGGGTGCTAGGACTAAACGCTAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTGCGAGATACTTGATGTGGGTGCTAGGACTAAACGCTAAAACA  300

seq1  TCTCTTCACCCCAGCTTTTCTTCATTTGTTTTAAAAGCTAATATACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCACCCCAGCTTTTCTTCATTTGTTTTAAAAGCTAATATACAAAA  350

seq1  AAATATGGTATTTTCATGATACAATGTTTCGGTTAATCCTCTTCTATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGTATTTTCATGATACAATGTTTCGGTTAATCCTCTTCTATTTC  400

seq1  ACTCTCTAGTTGTCTATCTGCCCCAACCCTTCTGCCTTGCAGTTCATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTAGTTGTCTATCTGCCCCAACCCTTCTGCCTTGCAGTTCATGTC  450

seq1  ACATGCACTCGATTGTTTTCTGTTATCCTATTCATCCCCTTCGCTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACTCGATTGTTTTCTGTTATCCTATTCATCCCCTTCGCTTTAAA  500

seq1  TCTCCCCCTCTTTGAAACTCTTTCTCTTTCGATGACCTATACTTACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTCTTTGAAACTCTTTCTCTTTCGATGACCTATACTTACACTT  550

seq1  ACTTTCATGTAATTATGCATAATTAAAATGTAAGAAGCTGTGAACTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATGTAATTATGCATAATTAAAATGTAAGAAGCTGTGAACTTTCA  600

seq1  GTGAAGACCACTGCTAACATTTCATATGAGTGTACTTAAAATGGCTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACCACTGCTAACATTTCATATGAGTGTACTTAAAATGGCTAAAC  650

seq1  ATTTTCTTTTATGTGCTCCCAAGTTGTAGGGAATGTTCTTTTTAATGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTATGTGCTCCCAAGTTGTAGGGAATGTTCTTTTTAATGTAA  700

seq1  CTACCAAACAAACAAATTTAATCTTATAACTTGTTCAGGATCTATCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAACAAACAAATTTAATCTTATAACTTGTTCAGGATCTATCTATG  750

seq1  AAATCTTTAAAATTCTGTCAAATTGGTTTTACCTACCAAACATTATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTAAAATTCTGTCAAATTGGTTTTACCTACCAAACATTATCTTT  800

seq1  GTTCCTTTCCACCTTTATATAAATATAATTCTGCTATCATAATATTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTCCACCTTTATATAAATATAATTCTGCTATCATAATATTTTTA  850

seq1  TTTCCTCCTTTTGGTGCTATTTATTGATAAGATTCTCACTGTGACTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTTTTGGTGCTATTTATTGATAAGATTCTCACTGTGACTTATT  900

seq1  TGTGTTTCATATATCAGAAATTGAGCAGCATTTTATTCTTAAGTGTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCATATATCAGAAATTGAGCAGCATTTTATTCTTAAGTGTTATT  950

seq1  CAACTACTTAAAAATCATGAGGTGTGTTTTTAATTTTGTATGCATATACT  1000
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  CAACTACTTTAAAATCATGA-GTGTGTTTTTAATTTTGTATGCATATACT  999

seq1  TAGTACCTCTGGATAAGGCATTAAGCTTACAATCTATGTAAGTGTTCAGT  1050
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TAGTACCTCTGGATA--GCATTAAGCTTACAATCTATGTAAGTGTTCAGT  1047

seq1  ATCTGTTTTTTTAAAGCAGTGATTTAT-CTAATTATGTATAACTTGCTCT  1099
      ||||||||||||||||||||||||||| | ||||||||||||||  ||||
seq2  ATCTGTTTTTTTAAAGCAGTGATTTATCCAAATTATGTATAACTGCCTCT  1097

seq1  TTAATGTTTATATCGGTTTATATTTTCCATGTAAGAGC  1137
      ||||||||||||  |||||||||||| ||||| |||||
seq2  TTAATGTTTATACGGGTTTATATTTTTCATGT-AGAGC  1134

seq1: chr12_79638278_79639180
seq2: B6Ng01-109N12.g_68_970 (reverse)

seq1  TCTCCCTC-TCCCCCCTCCTCATGCTCCCACACATGCTCACATTTTTTTA  49
      |||||||| |||||||  |||||||||||||||||||||||| |||||||
seq2  TCTCCCTCTTCCCCCCCTCTCATGCTCCCACACATGCTCACA-TTTTTTA  49

seq1  AATATTGCTTTGGAATTTACTTATTTTAAACAAAAGCCAAAAGCACTATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCTTTGGAATTTACTTATTTTAAACAAAAGCCAAAAGCACTATC  99

seq1  CCCTGGTAGAAATCGTGTTCATTCTGATCTATTTAAGAAATGTGTTCTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTAGAAATCGTGTTCATTCTGATCTATTTAAGAAATGTGTTCTGC  149

seq1  CCCATGCCTTACATACCAGCATTCAGGAGGCAGAAGCAGGTGAATCTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCTTACATACCAGCATTCAGGAGGCAGAAGCAGGTGAATCTTTG  199

seq1  TGAGTTCAAGAACAGCCTAGTCTACCGACTAAGCTCTAAGACAGCCTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGAACAGCCTAGTCTACCGACTAAGCTCTAAGACAGCCTATA  249

seq1  CTACATAGTAATGCCCTGTCTCAAAAATAGTAAAATATAGTAGAAATATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTAATGCCCTGTCTCAAAAATAGTAAAATATAGTAGAAATATA  299

seq1  GTAGATTGTATCACAATATCTCAAAAATAAAATAAACATTCATCTTATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTGTATCACAATATCTCAAAAATAAAATAAACATTCATCTTATTT  349

seq1  TACTTTTATAGTCAAAATTGAACCCTTTATAGCTCTCTTTTGGGGCTGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATAGTCAAAATTGAACCCTTTATAGCTCTCTTTTGGGGCTGGA  399

seq1  GAGATGGCTCAGAGCACAGTCTGCTCTTCCAGAGGTCATGAGTTCAATTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGAGCACAGTCTGCTCTTCCAGAGGTCATGAGTTCAATTC  449

seq1  CCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGGACTAGTGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGGACTAGTGCCC  499

seq1  TCTCCTGGCTTGCAGGCATAAATGCAGGCAGAACACTTAATAAATAGATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCTTGCAGGCATAAATGCAGGCAGAACACTTAATAAATAGATA  549

seq1  AATCTTTTTAAAAAAAGAGAAAGAAAAAAAAAAAGCTCTCTTTTAATGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTAAAAAAAGAGAAAGAAAAAAAAAAAGCTCTCTTTTAATGTC  599

seq1  CCAGATTTGTACATAGTAGAGTTGATTGATTTTGTTGGAAACATTGAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTGTACATAGTAGAGTTGATTGATTTTGTTGGAAACATTGAAGT  649

seq1  TATTTCTTTCTTGTTGAGTAGACAGACTGAAATTTATTAATATTTATTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTCTTGTTGAGTAGACAGACTGAAATTTATTAATATTTATTTT  699

seq1  TAATGCTAATAATCTTCAGCTACTAAACCCTAACATGAGAGTTGTTCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTAATAATCTTCAGCTACTAAACCCTAACATGAGAGTTGTTCTTT  749

seq1  GACTTCTACATGTTGACTTCTAAGACATGATCTAAATAAATTTTGACTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTACATGTTGACTTCTAAGACATGATCTAAATAAATTTTGACTGA  799

seq1  ATAACATTTGGAAGCTTTTGCAAACAAATTTCACTCAAATTACATACAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTGGAAGCTTTTGCAAACAAATTTCACTCAAATTACATACAAA  849

seq1  TAGTAAATTCTAGTAGGTGAAAAAGACAGTTCTACTTTAAATACTACAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATTCTAGTAGGTGAAAAAGACAGTTCTACTTTAAATACTACAGA  899

seq1  ATTC  903
      ||||
seq2  ATTC  903