BAC Information

Click to search

BAC

Clone NameB6Ng01-112I09
Chromosome12 (Build37)
Map Location 85,330,678 - 85,489,829
singlet/doubletdoublet
Overlap geneAcot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik
Downstream geneC130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112I09.bB6Ng01-112I09.g
ACCDH918564DH918565
length413739
definitionDH918564|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I09, 5' end.DH918565|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,330,678 - 85,331,096)(85,489,090 - 85,489,829)
sequence
atgtagaatgaacatgtagccttttctaatctatatgtactcgcttagca
gaatgtatttgcgattcatggggtcttctaggcatggagcctgtgttgaa
ggtctctggttcctttacagtctgtggagattgtgcgtgaagttgctgca
aatgcttacatagtagtttgtgcaggaacaaaaactttcctttcttttgg
gtaaataggtgtggggttactgggtcatatggtaagagcaggtttgattt
tttgtgagcaaggatgccctgcattttaccagcctctgcgtcctaccgcc
tgcatggtttagcgttacaccagcatcgtgggatggatctggttgctgcc
cagcttctgtggcagttggcacgatcagtttcggttcagagaggagagtg
gtatatgtgtgcg
gaattctctttcctagttttgtggggaggaaccaagtagttgcagagtgg
gatcaggtggttcccggaagtcagagttaaagactgaattcatagaatgg
atgagcaatatgagataagtccgtcgtggtagatgcgtatcaataaagcc
agcttaaatccacggcaaaattaaataaagcatgcgtagcaatagctaag
aaagaatcagggaaggcgggggggggggtgtaaaaagaaatgcgccgtca
tagaatagactcctcaaaccccttcttggcaccatagcaaccgccagatc
ctctggagcccgcgtatctcgcgtcgtcatggacacagttgtcacggtga
cactgggggagacaagcggaccggttccgccctccactgcagctgcacgc
cggccgttgcgggagcgcgcggacataagcgctaggcagagctgcctcca
gccgagtttctcccccatcccgtgcttcctgccgcttgggttcccggtgc
tcggagtgccgcctctccccacgtagccaagccacggcctcgcgtgaccc
tcagcccgccggcgtgccggggagaggtgggaggagctgccacgccccgc
gaccgcacccagccatctcccgtccggagtcatcagtcttgagcccacct
tgctccctctctttagcggtgacgccagacacagctgcagccagttcatc
cctccctgcccgggaccaaatggggcgacttcgagtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85330678_85331096
seq2: B6Ng01-112I09.b_47_465

seq1  GAATTCATGTAGAATGAACATGTAGCCTTTTCTAATCTATATGTACTCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGAATGAACATGTAGCCTTTTCTAATCTATATGTACTCGC  50

seq1  TTAGCAGAATGTATTTGCGATTCATGGGGTCTTCTAGGCATGGAGCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAATGTATTTGCGATTCATGGGGTCTTCTAGGCATGGAGCCTGT  100

seq1  GTTGAAGGTCTCTGGTTCCTTTACAGTCTGTGGAGATTGTGCGTGAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGGTCTCTGGTTCCTTTACAGTCTGTGGAGATTGTGCGTGAAGTT  150

seq1  GCTGCAAATGCTTACATAGTAGTTTGTGCAGGAACAAAAACTTTCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAATGCTTACATAGTAGTTTGTGCAGGAACAAAAACTTTCCTTTC  200

seq1  TTTTGGGTAAATAGGTGTGGGGTTACTGGGTCATATGGTAAGAGCAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTAAATAGGTGTGGGGTTACTGGGTCATATGGTAAGAGCAGGTT  250

seq1  TGATTTTTTGTGAGCAAGGATGCCCTGCATTTTACCAGCCTCTGCGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTGTGAGCAAGGATGCCCTGCATTTTACCAGCCTCTGCGTCCT  300

seq1  ACCGCCTGCATGGTTTAGCGTTACACCAGCATCGTGGGATGGATCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCTGCATGGTTTAGCGTTACACCAGCATCGTGGGATGGATCTGGTT  350

seq1  GCTGCCCAGCTTCTGTGGCAGTTGGCACGATCAGTTTCGGTTCAGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCAGCTTCTGTGGCAGTTGGCACGATCAGTTTCGGTTCAGAGAGG  400

seq1  AGAGTGGTATATGTGTGCG  419
      |||||||||||||||||||
seq2  AGAGTGGTATATGTGTGCG  419

seq1: chr12_85489090_85489829
seq2: B6Ng01-112I09.g_70_808 (reverse)

seq1  ATCACTCGAATGTCGCCCCCTTTGGT-CCGGGCAGGGAGGGCTGAACTGG  49
      |||||||||| |||||||| |||||| |||||||||||||| ||||||||
seq2  ATCACTCGAA-GTCGCCCCATTTGGTCCCGGGCAGGGAGGGATGAACTGG  49

seq1  CTGCAGCTGTGTCTGGCGTCACCGCTTAAAGAGAGGGAGCAAGGTGGGCT  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGCAGCTGTGTCTGGCGTCACCGC-TAAAGAGAGGGAGCAAGGTGGGCT  98

seq1  CAAGACTGATGACTCCGGGCGGGAGATGGCTGGGTGCGGTCGCGGGGCGT  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAGACTGATGACTCCGGACGGGAGATGGCTGGGTGCGGTCGCGGGGCGT  148

seq1  GGCAGCTCCTCCCACCTCTCCCCGGCACGCCGGCGGGCTGAGGGTCACGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCCTCCCACCTCTCCCCGGCACGCCGGCGGGCTGAGGGTCACGC  198

seq1  GAGGCCGTGGCTTGGCTACGTGGGGAGAGGCGGCACTCCGAGCACCGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGTGGCTTGGCTACGTGGGGAGAGGCGGCACTCCGAGCACCGGGA  248

seq1  ACCCAAGCGGCAGGAAGCACGGGATGGGGGAGAAACTCGGCTGGAGGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGCGGCAGGAAGCACGGGATGGGGGAGAAACTCGGCTGGAGGCAG  298

seq1  CTCTGCCTAGCGCTTATGTCCGCGCGCTCCCGCAACGGCCGGCGTGCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTAGCGCTTATGTCCGCGCGCTCCCGCAACGGCCGGCGTGCAGC  348

seq1  TGCAGTGGAGGGCGGAACCGGTCCGCTTGTCTCCCCCAGTGTCACCGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGAGGGCGGAACCGGTCCGCTTGTCTCCCCCAGTGTCACCGTGA  398

seq1  CAACTGTGTCCATGACGACGCGAGATACGCGGGCTCCAGAGGATCTGGCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGTCCATGACGACGCGAGATACGCGGGCTCCAGAGGATCTGGCG  448

seq1  GTTGCTATGGTGCCAAGAAGGGGTTTGAGGAGTCTATTCTATGACGGCGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATGGTGCCAAGAAGGGGTTTGAGGAGTCTATTCTATGACGGCGC  498

seq1  ATTTCTTTTTACACCCCCCCCCCCGCCTTCCCTGATTCTTTCTTAGCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTTACACCCCCCCCCCCGCCTTCCCTGATTCTTTCTTAGCTAT  548

seq1  TGCTACGCATGCTTTATTTAATTTTGCCGTGGATTTAAGCTGGCTTTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACGCATGCTTTATTTAATTTTGCCGTGGATTTAAGCTGGCTTTATT  598

seq1  GATACGCATCTACCACGACGGACTTATCTCATATTGCTCATCCATTCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGCATCTACCACGACGGACTTATCTCATATTGCTCATCCATTCTAT  648

seq1  GAATTCAGTCTTTAACTCTGACTTCCGGGAACCACCTGATCCCACTCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTTAACTCTGACTTCCGGGAACCACCTGATCCCACTCTGC  698

seq1  AACTACTTGGTTCCTCCCCACAAAACTAGGAAAGAGAATTC  740
      |||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTGGTTCCTCCCCACAAAACTAGGAAAGAGAATTC  739