BAC Information

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BAC

Clone NameB6Ng01-113C20
Chromosome12 (Build37)
Map Location 28,022,068 - 28,208,985
singlet/doubletdoublet
Overlap geneSox11
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneLOC100043009, LOC669327, 1110015M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113C20.bB6Ng01-113C20.g
ACCDH919038DH919039
length1,0531,102
definitionDH919038|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C20, 5' end.DH919039|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,022,068 - 28,023,129)(28,207,865 - 28,208,985)
sequence
gaattcctgttcggacacatgtaaggctcagtcctgtcgtgcttgcaggc
cacaggctatacaaagggtatctgaaactgacattcctaatgaagttttt
ttttttttatatataaaatttggcccttagaataactgagaaatatcctg
aaaaaccttccctgaaactgtaataaacaaagtttctttatctactgata
aaatcgacaactcagtaagctagtttcgctggtcttcctacataagaaaa
aagcacaaatatagttgcctcagaaatctgttaaaagcagagaaccttgc
aggaaaaagagtataaagattctagaaatgagagagtacaagaaaacctc
tcttccaagtgtccacaaagatacatatgcccattaggagaaaacagtga
gactatacagaataccccatcagagaataagaaagccgagtgatggagta
tatttctattgaatgactacttgaaaattgagcaacttatttgccttatt
tcccagattccttgggcaaaactcatttgaattctgaagtgaagaacaaa
tgttcatttcttacactgttctagtatcaagatgattgtggtttcaattc
ccagagaaaaaaagtagaccttgccttttgatttttttttctctcaaaac
aactaagtcagatcctgactgctaagagcatgcatatttaaatcacttcc
cctccattaacattaaaaagaaccatccaggcccaaaagagctgcaatga
tttttttttttctagctaaaggctaatcattctacaaataatttgcccag
tgaccgtagtcattcataacatgtatttgcaaagcacactttagcacact
gcctttcattcgtattatctttttaataggatgcatatcgagaatgtaga
aactggaaattatttcacagcttaaagaataagagaacgctggttcagtg
ttttgtttttttgtttctcaagatggaaatctcgctaaaaaatgcactcg
agtctgtgaactaggtacaggagcaggtacccaacccggctagactgcta
tgc
gaattctgtgcctccaacatgcgactacaccaacagggactactgagagc
tcagcatggcagagtccgggcttggcagcctggcaagcagactctggaga
tatcagttccttcctgctttgaaggaggcagacagcttccctccccactt
cccccatctcctgcaaatattgcctacctctgtgttctgggctgctttgc
ctcaagggactcaactgtttctttgggttttcaggcttccggaagtacca
tgccagagatattgtgttgcataagcttaggatttccgttggagctctgg
ggagcaggtagaccaagcctgagactggacgtcatgctaggccaggagag
ggcagccagatccaagtgcctaggaagagaattcaatataaagaaacaga
cccatttctcaaatgtagggaaattggctgcttgaaagtgatatgattgg
taggaatctaagaagtaacctcacctcagcttagaggaagcatcaggaag
agctttctagagaggaaaaagaaaagaaaaaaaaacccattctagccata
agcatggaggactccaccagctgactgagcagaaagagagggacaaagcc
caattacaaaaataaaataaaataaaataaaataaaataaaataaaataa
aaataaaataaaataaaataaaatgcaatactgtatcctacaaataaaat
caccaggttgatgctaagcaccctataaatgttgttctgtagttagtttc
tctcctttaaacttcattgttactacatagtgtgtgtaaaagcagtgtgt
ctgtgtcatggtacgtgcacagtctctggaagcagaggggagcttttagg
agtctatctcctttcacaagatgcagccatcagatgaggcagccttttac
tgccgagctgtctgttggtcagtgtatggtttctatatgacttctgtgat
caaatgtgattgtcctcagagccagagctgatggaaggggcagatcatca
ctatgtcacctgagatcccagaaagacctgaattggaaaagctatgacgg
caccatccgttggacctcctttccattcctctggagtttaaagagattga
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28022068_28023129
seq2: B6Ng01-113C20.b_48_1100

seq1  GAATTCCTGTTCGGACACATGTAAGGCTCAGTCCTGTCGTGCTTGCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCGGACACATGTAAGGCTCAGTCCTGTCGTGCTTGCAGGC  50

seq1  CACAGGCTATACAAAGGGTATCTGAAACTGACATTCCTAATGAAGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTATACAAAGGGTATCTGAAACTGACATTCCTAATGAAGTTTTT  100

seq1  TTTTTTTTATATATAAAATTTGGCCCTTAGAATAACTGAGAAATATCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATATATAAAATTTGGCCCTTAGAATAACTGAGAAATATCCTG  150

seq1  AAAAACCTTCCCTGAAACTGTAATAAACAAAGTTTCTTTATCTACTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTTCCCTGAAACTGTAATAAACAAAGTTTCTTTATCTACTGATA  200

seq1  AAATCGACAACTCAGTAAGCTAGTTTCGCTGGTCTTCCTACATAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGACAACTCAGTAAGCTAGTTTCGCTGGTCTTCCTACATAAGAAAA  250

seq1  AAGCACAAATATAGTTGCCTCAGAAATCTGTTAAAAGCAGAGAACCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAATATAGTTGCCTCAGAAATCTGTTAAAAGCAGAGAACCTTGC  300

seq1  AGGAAAAAGAGTATAAAGATTCTAGAAATGAGAGAGTACAAGAAAACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGAGTATAAAGATTCTAGAAATGAGAGAGTACAAGAAAACCTC  350

seq1  TCTTCCAAGTGTCCACAAAGATACATATGCCCATTAGGAGAAAACAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAGTGTCCACAAAGATACATATGCCCATTAGGAGAAAACAGTGA  400

seq1  GACTATACAGAATACCCCATCAGAGAATAAGAAAGCCGAGTGATGGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATACAGAATACCCCATCAGAGAATAAGAAAGCCGAGTGATGGAGTA  450

seq1  TATTTCTATTGAATGACTACTTGAAAATTGAGCAACTTATTTGCCTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTGAATGACTACTTGAAAATTGAGCAACTTATTTGCCTTATT  500

seq1  TCCCAGATTCCTTGGGCAAAACTCATTTGAATTCTGAAGTGAAGAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATTCCTTGGGCAAAACTCATTTGAATTCTGAAGTGAAGAACAAA  550

seq1  TGTTCATTTCTTACACTGTTCTAGTATCAAGATGATTGTGGTTTCAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTCTTACACTGTTCTAGTATCAAGATGATTGTGGTTTCAATTC  600

seq1  CCAGAGAAAAAAAGTAGACCTTGCCTTTTGATTTTTTTTTCTCTCAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAAAAAAGTAGACCTTGCCTTTTGATTTTTTTTTCTCTCAAAAC  650

seq1  AACTAAGTCAGATCCTGACTGCTAAGAGCATGCATATTTAAATCACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTCAGATCCTGACTGCTAAGAGCATGCATATTTAAATCACTTCC  700

seq1  CCTCCATTAACATTAAAAAGAACCATCCAGGCCCAAAAGAGCTGCAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTAACATTAAAAAGAACCATCCAGGCCCAAAAGAGCTGCAATGA  750

seq1  -TTTTTTTTTTCTAGCTAAAGGCTAATCATTCTACAAATAATTTGCCCAG  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCTAGCTAAAGGCTAATCATTCTACAAATAATTTGCCCAG  800

seq1  TGACCGTAGTCATTCATAACATGTATTTGCAAAGCACACTTTAAGCACAC  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGACCGTAGTCATTCATAACATGTATTTGCAAAGCACACTTT-AGCACAC  849

seq1  TGCCTTTCATTCGTATTATCTTTTTAATAAGGATGCATATCGAGAATGTA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCCTTTCATTCGTATTATCTTTTTAAT-AGGATGCATATCGAGAATGTA  898

seq1  GAAACTGGAAATTATTTCCACAGCTTAAAGAATAAGAGAACGCTGGTTCA  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAACTGGAAATTATTT-CACAGCTTAAAGAATAAGAGAACGCTGGTTCA  947

seq1  GGTGTTTTTGTTTTTTTGTTTCTTCAAAGATGGAAATCTCGCCAAAAAAA  999
       ||| ||||||||||||||||||   ||||||||||||||||    ||||
seq2  -GTG-TTTTGTTTTTTTGTTTCT--CAAGATGGAAATCTCGC---TAAAA  990

seq1  AATGCACTCGAGTCTGTGAACTAGGTACAGGAGCAGGGTACCCAA-CCGG  1048
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  AATGCACTCGAGTCTGTGAACTAGGTACAGGAGCA-GGTACCCAACCCGG  1039

seq1  CTAGACTGCTATGC  1062
      ||||||||||||||
seq2  CTAGACTGCTATGC  1053

seq1: chr12_28207865_28208985
seq2: B6Ng01-113C20.g_68_1169 (reverse)

seq1  TTTCAAATCTCTTCAACTTTCCCAGAGGAATATGAAAGGAGGTTCAACAG  50
      |||| |||||||| ||  |  ||||||||||  |||||||||| |||| |
seq2  TTTC-AATCTCTTTAAACT--CCAGAGGAAT-GGAAAGGAGGTCCAAC-G  45

seq1  GATGGTGCACTGTC-TAGCCTTTTCCATTTTCAGGTCTCTCTGGGAATCT  99
      |||||||  | ||| ||| ||||||||  ||||||||| |||||| ||||
seq2  GATGGTG--CCGTCATAG-CTTTTCCA-ATTCAGGTCTTTCTGGG-ATCT  90

seq1  CCAGGTGACATAGTGATGGATCTGCCCCTATCCCTCAGCTTCTGGCTCTG  149
       |||||||||||||||| ||||||||||| ||| ||||| ||||||||||
seq2  -CAGGTGACATAGTGAT-GATCTGCCCCT-TCCATCAGC-TCTGGCTCTG  136

seq1  AGGACCAATCACATTTGATCACAGAAGTCATATAGAAACCATACACTGGA  199
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGA-CAATCACATTTGATCACAGAAGTCATATAGAAACCATACACT-GA  184

seq1  CCAACAAGACAGCTCGGCAGGTAAAAGGCTTGCCTCATCTGATGGCTGCA  249
      ||||| ||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CCAAC-AGACAGCTCGGCA-GTAAAAGGC-TGCCTCATCTGATGGCTGCA  231

seq1  TCTTGTGAAAGGAGATAGACTCCTAAAAGCTCCCCTCTGCCTTCCAGAGA  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTGTGAAAGGAGATAGACTCCTAAAAGCTCCCCTCTG-CTTCCAGAGA  280

seq1  CTGTGCACGTACCATGACACAGACACACCTGCTTTTACACACACTATGTA  349
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTGCACGTACCATGACACAGACACA-CTGCTTTTACACACACTATGTA  329

seq1  GTAACAATGAAGTTTAAAGGAGAGAAACTAACTACAGAACAACATTTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAATGAAGTTTAAAGGAGAGAAACTAACTACAGAACAACATTTATA  379

seq1  GGGTGCTTAGCATCAACCTGGTGATTTTATTTGTAGGATACAGTATTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTAGCATCAACCTGGTGATTTTATTTGTAGGATACAGTATTGCA  429

seq1  TTTTATTTTATTTTATTTTA-TTTTATTTTATTTTATTTTATTTTATTTT  498
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTATTTTATTTTTATTTTATTTTATTTTATTTTATTTT  479

seq1  ATTTTATTTTATTTTTGTAATTGGGCTTTGTCCCTCTCTTTCTGCTCAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTTGTAATTGGGCTTTGTCCCTCTCTTTCTGCTCAGT  529

seq1  CAGCTGGTGGAGTCCTCCATGCTTATGGCTAGAATGGGTTTTTTTTTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTGGAGTCCTCCATGCTTATGGCTAGAATGGGTTTTTTTTTCTT  579

seq1  TTCTTTTTCCTCTCTAGAAAGCTCTTCCTGATGCTTCCTCTAAGCTGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCCTCTCTAGAAAGCTCTTCCTGATGCTTCCTCTAAGCTGAGG  629

seq1  TGAGGTTACTTCTTAGATTCCTACCAATCATATCACTTTCAAGCAGCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTACTTCTTAGATTCCTACCAATCATATCACTTTCAAGCAGCCAA  679

seq1  TTTCCCTACATTTGAGAAATGGGTCTGTTTCTTTATATTGAATTCTCTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTACATTTGAGAAATGGGTCTGTTTCTTTATATTGAATTCTCTTC  729

seq1  CTAGGCACTTGGATCTGGCTGCCCTCTCCTGGCCTAGCATGACGTCCAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCACTTGGATCTGGCTGCCCTCTCCTGGCCTAGCATGACGTCCAGT  779

seq1  CTCAGGCTTGGTCTACCTGCTCCCCAGAGCTCCAACGGAAATCCTAAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTTGGTCTACCTGCTCCCCAGAGCTCCAACGGAAATCCTAAGCT  829

seq1  TATGCAACACAATATCTCTGGCATGGTACTTCCGGAAGCCTGAAAACCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAACACAATATCTCTGGCATGGTACTTCCGGAAGCCTGAAAACCCA  879

seq1  AAGAAACAGTTGAGTCCCTTGAGGCAAAGCAGCCCAGAACACAGAGGTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGTTGAGTCCCTTGAGGCAAAGCAGCCCAGAACACAGAGGTAG  929

seq1  GCAATATTTGCAGGAGATGGGGGAAGTGGGGAGGGAAGCTGTCTGCCTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTTGCAGGAGATGGGGGAAGTGGGGAGGGAAGCTGTCTGCCTCC  979

seq1  TTCAAAGCAGGAAGGAACTGATATCTCCAGAGTCTGCTTGCCAGGCTGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCAGGAAGGAACTGATATCTCCAGAGTCTGCTTGCCAGGCTGCC  1029

seq1  AAGCCCGGACTCTGCCATGCTGAGCTCTCAGTAGTCCCTGTTGGTGTAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGGACTCTGCCATGCTGAGCTCTCAGTAGTCCCTGTTGGTGTAGT  1079

seq1  CGCATGTTGGAGGCACAGAATTC  1121
      |||||||||||||||||||||||
seq2  CGCATGTTGGAGGCACAGAATTC  1102