BAC Information

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BAC

Clone NameB6Ng01-113L09
Chromosome12 (Build37)
Map Location 88,776,352 - 88,777,440
singlet/doubletsinglet
Overlap genenone
Upstream geneEsrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287
Downstream geneNrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113L09.bB6Ng01-113L09.g
ACCDH919434DH919435
length1,089516
definitionDH919434|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L09, 5' end.DH919435|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatcctcaagtttgcgtgacaaacatttcaccaagtaaggtat
cttcccagtctttgtaaggcaaggctatgcctggcttccccctccccctc
aactaaagcaaaataaatcacatgggttctggggaattgacctgaggtcc
atgttctaataaggaaaaactttctcttagtgccacctcccaagctcaaa
tgactaatgttttaatcattagtgactattcaacaaaatgctaaaaaatt
tatggccactagaatttggaactcactggctggtttatcaaccaacatgt
agagtactctgtcctgatttgatattgaggggcaaccacagtgttttctt
ctagtgaattactaaacacaaagggtccatgaaacacccctgaagctata
atcagtggtcataaatatgaatagcctagaaagtcctcaaacctgatgtc
tgaaatagcttgtgctaactttgggcagcttcaccaggattaaactatag
ataagaggctgtgagaaaaatgacagggcttcttcattctatgtacaaag
tagtttgaagggggacaaaaagcagatggctgggaggtctctttggcatt
ctttagaaaacgcatgaatgatagtgacttggactaaggcaggcataaag
acagagagaaatgatagtttaatctgactctaatgcctcctttgttttaa
tgggtatatcctatttctgggacaagccatgactgattaatggtctcccg
ctgatgaataaggctgtaataaaggtgcttgcccttaaaatctgcacatc
catccatatcatattgaggaacacagggcctaggcaaatataactctatt
acccaatcccaattgtcttctgggtaagtctctagctatagtacccagaa
cagagcacacattgacacaaatcactcttgaagccttgtttctctgaata
ctcacaaactacatctttactgcctttctaatagtcggaattctgtggag
ataaaagggacggctcctcaaggcccctttgttctggttcccagtgtggg
ggaaatattggggggaacagattctcctcgggggagctt
ttcctgtcaaaggaaattcaggaactaaaatggagcagaaactgaaggaa
aggctatccagagaccgccaaacctagggatccatcccatctgctgacac
caacccttaacactattgctgacaccaagaagtgcttgctgacactagcc
tgtcacatgagaggctctatcaggaactgactaatacagattcagattca
gatactcatagctagtgtttagactgagccgggggaccccaatggaagag
ttaggggaaatactaaaggagttgaaggggatttcaaccccataggaaga
acaatgatatcaactaaccacataccccagagctcccagggaataaacca
ccaaccaaagactatacatgaattggtccatggtttagctacatatataa
cagaggattgccttatttggcgtcaatgggaggagaatactttggtcctg
tggcgacttgatgctctagcacaggggatattagagaggtgaggcaggag
tgggtgggtatgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88776352_88777440
seq2: B6Ng01-113L09.b_49_1137

seq1  GAATTCAGATCCTCAAGTTTGCGTGACAAACATTTCACCAAGTAAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCTCAAGTTTGCGTGACAAACATTTCACCAAGTAAGGTAT  50

seq1  CTTCCCAGTCTTTGTAAGGCAAGGCTATGCCTGGCTTCCCCCTCCCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGTCTTTGTAAGGCAAGGCTATGCCTGGCTTCCCCCTCCCCCTC  100

seq1  AACTAAAGCAAAATAAATCACATGGGTTCTGGGGAATTGACCTGAGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGCAAAATAAATCACATGGGTTCTGGGGAATTGACCTGAGGTCC  150

seq1  ATGTTCTAATAAGGAAAAACTTTCTCTTAGTGCCACCTCCCAAGCTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTAATAAGGAAAAACTTTCTCTTAGTGCCACCTCCCAAGCTCAAA  200

seq1  TGACTAATGTTTTAATCATTAGTGACTATTCAACAAAATGCTAAAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATGTTTTAATCATTAGTGACTATTCAACAAAATGCTAAAAAATT  250

seq1  TATGGCCACTAGAATTTGGAACTCACTGGCTGGTTTATCAACCAACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCACTAGAATTTGGAACTCACTGGCTGGTTTATCAACCAACATGT  300

seq1  AGAGTACTCTGTCCTGATTTGATATTGAGGGGCAACCACAGTGTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTCTGTCCTGATTTGATATTGAGGGGCAACCACAGTGTTTTCTT  350

seq1  CTAGTGAATTACTAAACACAAAGGGTCCATGAAACACCCCTGAAGCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAATTACTAAACACAAAGGGTCCATGAAACACCCCTGAAGCTATA  400

seq1  ATCAGTGGTCATAAATATGAATAGCCTAGAAAGTCCTCAAACCTGATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGTCATAAATATGAATAGCCTAGAAAGTCCTCAAACCTGATGTC  450

seq1  TGAAATAGCTTGTGCTAACTTTGGGCAGCTTCACCAGGATTAAACTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGCTTGTGCTAACTTTGGGCAGCTTCACCAGGATTAAACTATAG  500

seq1  ATAAGAGGCTGTGAGAAAAATGACAGGGCTTCTTCATTCTATGTACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGCTGTGAGAAAAATGACAGGGCTTCTTCATTCTATGTACAAAG  550

seq1  TAGTTTGAAGGGGGACAAAAAGCAGATGGCTGGGAGGTCTCTTTGGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAAGGGGGACAAAAAGCAGATGGCTGGGAGGTCTCTTTGGCATT  600

seq1  CTTTAGAAAACGCATGAATGATAGTGACTTGGACTAAGGCAGGCATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAACGCATGAATGATAGTGACTTGGACTAAGGCAGGCATAAAG  650

seq1  ACAGAGAGAAATGATAGTTTAATCTGACTCTAATGCCTCCTTTGTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAAATGATAGTTTAATCTGACTCTAATGCCTCCTTTGTTTTAA  700

seq1  TGGGTATATCCTATTTCTGGGACAAGCCATGACTGATTAATGGTCTCCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATATCCTATTTCTGGGACAAGCCATGACTGATTAATGGTCTCCCG  750

seq1  CTGATGAATAAGGCTGTAATAAAGGTGCTTGCCCTTAAAATCTGCACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATAAGGCTGTAATAAAGGTGCTTGCCCTTAAAATCTGCACATC  800

seq1  CATCCATATCATATTGAGGAACACAGGGCCTAGGCAAATATAACTCTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATATCATATTGAGGAACACAGGGCCTAGGCAAATATAACTCTATT  850

seq1  ACCCAATCCCAATTGTCTTCTGGGTAAGTCTCTAGCTATAGTACCCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATCCCAATTGTCTTCTGGGTAAGTCTCTAGCTATAGTACCCAGAA  900

seq1  CAGAGCACACATTGACACAAAATCACTC-TGAAGCCTTGTTTCTCTGAAT  949
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  CAGAGCACACATTGACAC-AAATCACTCTTGAAGCCTTGTTTCTCTGAAT  949

seq1  ACTCACAAACTACATCTTTACTGCCTTTCTAATAGTCGGAATTCTGTGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAACTACATCTTTACTGCCTTTCTAATAGTCGGAATTCTGTGGA  999

seq1  GATAAAAGGGACGGCTCCTCAGAGGCCCCTTTGTTCCTGGTTCCCAGTGT  1049
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  GATAAAAGGGACGGCTCCTCA-AGGCCCCTTTGTT-CTGGTTCCCAGTGT  1047

seq1  -GGGGAGATATTGGGGGAACCAGATTCT-CTCGGGGGAGCTT  1089
       ||||| |||||||||| | |||||||| |||||||||||||
seq2  GGGGGAAATATTGGGGGGAACAGATTCTCCTCGGGGGAGCTT  1089