BAC Information

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BAC

Clone NameB6Ng01-113O03
Chromosome12 (Build37)
Map Location 53,971,031 - 53,972,197
singlet/doubletsinglet
Overlap geneAkap6
Upstream geneHeatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113O03.bB6Ng01-113O03.g
ACCDH919558DH919559
length1,1731,152
definitionDH919558|Mus musculus domesticus DNA, BAC clone: B6Ng01-113O03, 5' end.DH919559|Mus musculus domesticus DNA, BAC clone: B6Ng01-113O03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacccaatggctgagaagcacctgaaaaaatg
ttcagcatccttcatcatcatggaaatgcaaatcaaaacaaccctgagat
tccatctcatatcagtcagaatggctaagatcaaagaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctc
agaaaattggacatagtactattagaggatcccgcaatacctctcctggg
catatatccagaagatgttccaactggtaagaaagacacatgctccacta
tgttcatagcagctttatttataatatccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacaaaaaatgtggttcatttacacagt
tgagtactattcagctataaaaaagaatgaatttatgaaaatcctaggca
aatggatggacctggagagcatcatcttgagtgaggtaacccaaccacaa
aagaactcaaaggatatgtattcacttataagtggatattagaccagaaa
cttagaatacccaaaatataagatacaatttgcgaaacacatgaaactca
agaagagcgaagacaaaagtgtggacactttgtcccttcttagaattggg
aacaaaacacccatggaaggagttacagtgacaaagtttggagctgagac
gaaaggatggaccatctagagactgccatatctagggatccatcctataa
tcagcctctaaacgctgacaccattgcatacactaacaagattttgctga
aaggaccctgatatagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgctcatagtcagctattggatagatcacagggcccc
aattgaggagctagaagaaagtacccaagagctaaaggtatctgcaatcc
tattaggtggaacaacaatatgactaaccaggccccgaactcttgactct
agcttgcaatggtatcaaagatggcctagtggccaccaggaagaaggcca
ttggtcgtgcaactttatatgcctcattcaaggaacacagggccataagt
ggaggtggtgtaatggggagtga
gaattctctgtgtataattagggagaagaaagctcttcactaggtttata
gtcaatctaaataagcaatgggttttcaaatgacattttagataaaatta
acctagatatataaaaagtacattgcaactgactttgtcacttagcttgt
aacagatttcaaaagcaaagaataagatcctttgaggaggttgaatcgct
gttacaggattatttgaatagacctcatcctccattttggcgggtcattg
gagtattaataatggatggctgctgtgcttggcagtcagatatgttattc
ttatccatttttatttcccaaaggagcctctggaaaagggcaaagagggt
agatttaaaaccacattattggaattcaatacctttcatcttgttttgta
tgtctagggtttgttgaagagtggtactaatatggagagtcagccaagca
tggggcaggcggaataccaaaatggattttcttaagtaaaatataagttg
gattctgtgttttaatttaggtctcaatgaccaacactaacatttccaga
aaagattccaaatgtgtgtttgtgtattttgatcattttgattttcatcg
ggtaaaggaatggacaaaaatctaccaaggcagattatttaggctaatga
aaataaataaaaaattacataggtaaattacaaaaataaaaacaaataaa
aattatgtaagtcaattataaagtataaatgtgctaattcttaaaaaaag
ctatgacaaactgaagttttagtcatgtaaagtgaaccactgaaggaata
ctaagttctcacatgcctttgtccttcctgtgatcacacaaaagcccaag
agggatgaattcgaatcctagaatgctagagtgtcatgatcactctgtca
agccttggaatccatcctcagaaaagtgttctctctggggttttatctga
aaacagaaaagagctggctccctatcagccccaccaaaggggacagtggg
gcttccattatgcactccttttatagagctcttgcacctactttttttct
cagttaaaaatatcctggacattcgatggcataaagaactttggcccatg
tctcatatatttagtgttctccagccgggcccaggccttggtcctgcata
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53971031_53972197
seq2: B6Ng01-113O03.g_67_1218

seq1  GAATTCTCTGTGTATAATTAGGGAGAAGAAAGCTCTTCACTAGGTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTATAATTAGGGAGAAGAAAGCTCTTCACTAGGTTTATA  50

seq1  GTCAATCTAAATAAGCAATGGGTTTTCAAATGACATTTTAGATAAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCTAAATAAGCAATGGGTTTTCAAATGACATTTTAGATAAAATTA  100

seq1  ACCTAGATATATAAAAAGTACATTGCAACTGACTTTGTCACTTAGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGATATATAAAAAGTACATTGCAACTGACTTTGTCACTTAGCTTGT  150

seq1  AACAGATTTCAAAAGCAAAGAATAAGATCCTTTGAGGAGGTTGAATCGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTTCAAAAGCAAAGAATAAGATCCTTTGAGGAGGTTGAATCGCT  200

seq1  GTTACAGGATTATTTGAATAGACCTCATCCTCCATTTTGGCGGGTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGATTATTTGAATAGACCTCATCCTCCATTTTGGCGGGTCATTG  250

seq1  GAGTATTAATAATGGATGGCTGCTGTGCTTGGCAGTCAGATATGTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTAATAATGGATGGCTGCTGTGCTTGGCAGTCAGATATGTTATTC  300

seq1  TTATCCATTTTTATTTCCCAAAGGAGCCTCTGGAAAAGGGCAAAGAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATTTTTATTTCCCAAAGGAGCCTCTGGAAAAGGGCAAAGAGGGT  350

seq1  AGATTTAAAACCACATTATTGGAATTCAATACCTTTCATCTTGTTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAAACCACATTATTGGAATTCAATACCTTTCATCTTGTTTTGTA  400

seq1  TGTCTAGGGTTTGTTGAAGAGTGGTACTAATATGGAGAGTCAGCCAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGGGTTTGTTGAAGAGTGGTACTAATATGGAGAGTCAGCCAAGCA  450

seq1  TGGGGCAGGCGGAATACCAAAATGGATTTTCTTAAGTAAAATATAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGGCGGAATACCAAAATGGATTTTCTTAAGTAAAATATAAGTTG  500

seq1  GATTCTGTGTTTTAATTTAGGTCTCAATGACCAACACTAACATTTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGTTTTAATTTAGGTCTCAATGACCAACACTAACATTTCCAGA  550

seq1  AAAGATTCCAAATGTGTGTTTGTGTATTTTGATCATTTTGATTTTCATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCCAAATGTGTGTTTGTGTATTTTGATCATTTTGATTTTCATCG  600

seq1  GGTAAAGGAATGGACAAAAATCTACCAAGGCAGATTATTTAGGCTAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGAATGGACAAAAATCTACCAAGGCAGATTATTTAGGCTAATGA  650

seq1  AAATAAATAAAAAATTACATAGGTAAATTACAAAAATAAAAACAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAAAATTACATAGGTAAATTACAAAAATAAAAACAAATAAA  700

seq1  AATTATGTAAGTCAATTATAAAGTATAAATGTGCTAATTCTTAAAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTAAGTCAATTATAAAGTATAAATGTGCTAATTCTTAAAAAAAG  750

seq1  CTATGACAAACTGAAGTTTTAGTCATGTAAAGTGAACCACTGAAGGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAAACTGAAGTTTTAGTCATGTAAAGTGAACCACTGAAGGAATA  800

seq1  CTAAGTTCTCACATGCCTTTGTCCTTCCTGTGATCACACAAAAGCCCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTCTCACATGCCTTTGTCCTTCCTGTGATCACACAAAAGCCCAAG  850

seq1  AGGGGATGAATTCGAATCCTAGAATGCTAGAGTGTCATGATCACTCTGTC  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GGGATGAATTCGAATCCTAGAATGCTAGAGTGTCATGATCACTCTGTC  899

seq1  AAGCCTTGGAATCCATCCTCAGAAAAGTGTTCTCTCTTGGGGTTTTATCT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGCCTTGGAATCCATCCTCAGAAAAGTGTTCTCTC-TGGGGTTTTATCT  948

seq1  GAAAACAGAAAAGAAGCTGGCTCCCTATCCAGCCACACCCAAAGGGGACA  1000
      ||||||||||||| |||||||||||||| ||||| || ||||||||||| 
seq2  GAAAACAGAAAAG-AGCTGGCTCCCTAT-CAGCCCCA-CCAAAGGGGAC-  994

seq1  AGTGGGGCTTCCATTATGCACTCCTTTTATAGAGCTCTTGCAACTTACTT  1050
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  AGTGGGGCTTCCATTATGCACTCCTTTTATAGAGCTCTTGC-ACCTACTT  1043

seq1  TTTTTCTCAGTTAAAATATATCTTGACCATCAGATGGCATTAAATGTACT  1100
      |||||||||||||||| ||||| ||  |||  ||||||||  || | |||
seq2  TTTTTCTCAGTTAAAA-ATATCCTGGACATTCGATGGCAT--AAAGAACT  1090

seq1  TTGGCACATTGTCT-ATATATTTAGTGGTTCTCAAGCTGGGCCCCAAGCC  1149
      ||||| || ||||| ||||||||||| |||||| ||| ||||||  || |
seq2  TTGGCCCA-TGTCTCATATATTTAGT-GTTCTCCAGCCGGGCCC--AGGC  1136

seq1  CTTTGGGTCCTGCATATC  1167
      |||  |||||||||||||
seq2  CTT--GGTCCTGCATATC  1152