BAC Information

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BAC

Clone NameB6Ng01-114N17
Chromosome12 (Build37)
Map Location 75,985,660 - 76,142,019
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneHif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114N17.bB6Ng01-114N17.g
ACCDH920272DH920273
length1,029454
definitionDH920272|Mus musculus domesticus DNA, BAC clone: B6Ng01-114N17, 5' end.DH920273|Mus musculus domesticus DNA, BAC clone: B6Ng01-114N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,140,989 - 76,142,019)(75,985,660 - 75,986,119)
sequence
gaattcacttgagtagtaatttgtggtgcatgctctgtcaatcgatggac
aatgtagctgctccaagtataaaagagatctctggagacctccttctaga
gctttgaaagacttggagcatagtaggaggatccccagtggagaatgact
gcttaggatgtgcaaggccctagattcaatccccagcagcctgtgtttca
cacacacacacacacacacacacacacacacacacacacacacacaccac
agacttctactaaatattgaaaatatatatactttttctttaaggacatt
ttctaggtaatgggcacatggatatatgttttctcctaatttctagtgtt
cattggcaatgtattaccccaaagaattttcagatgcagagtagagctta
tgtagatgcagggctgatgcagagctatagcaaactggggctcactgaga
gtttggattggcaaggaggatttgcttgaagctccccacaatttttcttc
tagactaaaagattactataaggaagagcaaggttcttggaactgtttct
acaggctcattccagacttacttgtggcccattgaagacacagtggagag
ttccaacatttttacttcctggagtgtttaaaagtattattatcagtttt
tttttctgtttatgacttgtccctcagtgttacctttcctcttacaagga
tacatttaaaatatgtgtaagtctagtgagaattgcaacagagttcatag
aagggagcatttaaaacagatgtcccatgcatgagaagtcgtcgcttagt
aatgttgggtgaccctttacaagatgtcttctttgagtttgttgttttgt
ttggcttagaaaatgtacatctctgctgtttttactgtttttttccctct
aaatatatcattagttagctttcttgttgctcatagcatatggtgatggg
aacacatgttcgggttattatttctattttttttttttttttatacctca
tgggccagggaaagaaggaaggaagagag
tttagaagtgacagacatcttccagaaatggaagagaggtagataggtcc
aatgaagatggaatgtcaaaattagtctcagctttagactttatattcta
tagcatgcttatataatttgattaaatctcccctgctgttttgattaatc
ccccctctcatatacacacattcttcagcttgagctttggggttttattt
tatagctatgaattttaaatcaggacctactataaggacccaaattctag
tctatgtgtcaagaatttcataaaatactacaactctaggagtaaaaatg
tccaatagtaccactctctggacaatttcatttcatttttagactaacaa
aatctggcctattttaagtagctaatatattaatagattttaatgtatat
cgtgaagtataaggagcagagttgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76140989_76142019
seq2: B6Ng01-114N17.b_49_1077 (reverse)

seq1  CTCTCTCTCCTTCCCTCTTTCCCT-GCCCATGATGTATAAAAAAAAAAAA  49
      |||||| ||||||| ||||||||| |||||||| |||| |||||||||||
seq2  CTCTCT-TCCTTCCTTCTTTCCCTGGCCCATGAGGTAT-AAAAAAAAAAA  48

seq1  AAAAAAAAAAAAAAAAACCCGAACCATGTGTTCCCATCACCATAATGCTA  99
      ||||| | ||| || |||||||| ||||||||||||||||||| ||||||
seq2  AAAAATAGAAATAATAACCCGAA-CATGTGTTCCCATCACCAT-ATGCTA  96

seq1  TGAGCAACAAGAAAGCTAACTAATGATATAATTAGAGGGAAAAAAACAGT  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGCAACAAGAAAGCTAACTAATGATATATTTAGAGGGAAAAAAACAGT  146

seq1  AAAAACAGCAGAGATGTACATTTTCTAAGACCAAACAAACAAACAAACTC  199
      ||||||||||||||||||||||||||||| |||||||||  |||||||||
seq2  AAAAACAGCAGAGATGTACATTTTCTAAG-CCAAACAAAACAACAAACTC  195

seq1  AAAGAAGACATCTTGTAAAGGGTCA-CCAACATTACTAAGCGACGACTTC  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAGAAGACATCTTGTAAAGGGTCACCCAACATTACTAAGCGACGACTTC  245

seq1  TCATGCATGGGACATCTGTTTTAAATGCTCCCTTCTATGAACTCTGTTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGGGACATCTGTTTTAAATGCTCCCTTCTATGAACTCTGTTGC  295

seq1  AATTCTCACTAGACTTACACATATTTTAAATGTATCCTTGTAAGAGGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCACTAGACTTACACATATTTTAAATGTATCCTTGTAAGAGGAAA  345

seq1  GGTAACACTGAGGGACAAGTCATAAACAGAAAAAAAAACTGATAATAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACTGAGGGACAAGTCATAAACAGAAAAAAAAACTGATAATAATA  395

seq1  C-TTTAAACACTCCAGGAAGTAAAAATGTTGGAACTCTCCACTGTGTCTT  447
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAACACTCCAGGAAGTAAAAATGTTGGAACTCTCCACTGTGTCTT  445

seq1  CAATGGGCCACAAGTAAGTCTGGAATGAGCCTGTAGAAACAGTTCCAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCCACAAGTAAGTCTGGAATGAGCCTGTAGAAACAGTTCCAAGA  495

seq1  ACCTTGCTCTTCCTTATAGTAATCTTTTAGTCTAGAAGAAAAATTGTGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTCTTCCTTATAGTAATCTTTTAGTCTAGAAGAAAAATTGTGGG  545

seq1  GAGCTTCAAGCAAATCCTCCTTGCCAATCCAAACTCTCAGTGAGCCCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCAAGCAAATCCTCCTTGCCAATCCAAACTCTCAGTGAGCCCCAG  595

seq1  TTTGCTATAGCTCTGCATCAGCCCTGCATCTACATAAGCTCTACTCTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATAGCTCTGCATCAGCCCTGCATCTACATAAGCTCTACTCTGCA  645

seq1  TCTGAAAATTCTTTGGGGTAATACATTGCCAATGAACACTAGAAATTAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATTCTTTGGGGTAATACATTGCCAATGAACACTAGAAATTAGG  695

seq1  AGAAAACATATATCCATGTGCCCATTACCTAGAAAATGTCCTTAAAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACATATATCCATGTGCCCATTACCTAGAAAATGTCCTTAAAGAAA  745

seq1  AAGTATATATATTTTCAATATTTAGTAGAAGTCTGTGGTGTGTGTGTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATATATTTTCAATATTTAGTAGAAGTCTGTGGTGTGTGTGTGTG  795

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAACACAGGCTGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAACACAGGCTGCT  845

seq1  GGGGATTGAATCTAGGGCCTTGCACATCCTAAGCAGTCATTCTCCACTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGAATCTAGGGCCTTGCACATCCTAAGCAGTCATTCTCCACTGG  895

seq1  GGATCCTCCTACTATGCTCCAAGTCTTTCAAAGCTCTAGAAGGAGGTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCCTACTATGCTCCAAGTCTTTCAAAGCTCTAGAAGGAGGTCTC  945

seq1  CAGAGATCTCTTTTATACTTGGAGCAGCTACATTGTCCATCGATTGACAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTCTTTTATACTTGGAGCAGCTACATTGTCCATCGATTGACAG  995

seq1  AGCATGCACCACAAATTACTACTCAAGTGAATTC  1031
      ||||||||||||||||||||||||||||||||||
seq2  AGCATGCACCACAAATTACTACTCAAGTGAATTC  1029

seq1: chr12_75985660_75986119
seq2: B6Ng01-114N17.g_67_526

seq1  GAATTCTTTAGAAGTGACAGACATCTTCCAGAAATGGAAGAGAGGTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAAGTGACAGACATCTTCCAGAAATGGAAGAGAGGTAGAT  50

seq1  AGGTCCAATGAAGATGGAATGTCAAAATTAGTCTCAGCTTTAGACTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAATGAAGATGGAATGTCAAAATTAGTCTCAGCTTTAGACTTTAT  100

seq1  ATTCTATAGCATGCTTATATAATTTGATTAAATCTCCCCTGCTGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAGCATGCTTATATAATTTGATTAAATCTCCCCTGCTGTTTTGA  150

seq1  TTAATCCCCCCTCTCATATACACACATTCTTCAGCTTGAGCTTTGGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCCCCTCTCATATACACACATTCTTCAGCTTGAGCTTTGGGGTT  200

seq1  TTATTTTATAGCTATGAATTTTAAATCAGGACCTACTATAAGGACCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATAGCTATGAATTTTAAATCAGGACCTACTATAAGGACCCAAA  250

seq1  TTCTAGTCTATGTGTCAAGAATTTCATAAAATACTACAACTCTAGGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCTATGTGTCAAGAATTTCATAAAATACTACAACTCTAGGAGTA  300

seq1  AAAATGTCCAATAGTACCACTCTCTGGACAATTTCATTTCATTTTTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCCAATAGTACCACTCTCTGGACAATTTCATTTCATTTTTAGAC  350

seq1  TAACAAAATCTGGCCTATTTTAAGTAGCTAATATATTAATAGATTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATCTGGCCTATTTTAAGTAGCTAATATATTAATAGATTTTAAT  400

seq1  GTATATCGTGAAGTATAAGGAGCAGAGTTGTGTGTGTGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCGTGAAGTATAAGGAGCAGAGTTGTGTGTGTGTGTGTGTGTGTG  450

seq1  TGTGTGTGTG  460
      ||||||||||
seq2  TGTGTGTGTG  460