BAC Information

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BAC

Clone NameB6Ng01-117A13
Chromosome12 (Build37)
Map Location 21,164,900 - 21,312,691
singlet/doubletdoublet
Overlap geneDdef2, Itgb1bp1, Cpsf3
Upstream geneLOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257
Downstream geneIah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416, LOC668650, EG668496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117A13.bB6Ng01-117A13.g
ACCDH921877DH921878
length1,091511
definitionDH921877|Mus musculus domesticus DNA, BAC clone: B6Ng01-117A13, 5' end.DH921878|Mus musculus domesticus DNA, BAC clone: B6Ng01-117A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,311,587 - 21,312,691)(21,164,900 - 21,165,415)
sequence
gaattccagagacccgctggccctgttctggtttcttgtctgccaaaaag
cccatgacctagtgaaaacagaagagaggtgtcaaagcagaggcccaggc
tgccatcacacagaggctgggggtgtggagggggtccatcccacggggga
gtgtatcacttatgtgatggggaagagcacttctgaactcccagttcgca
ggtgccaccatgtctagctgaccccacaatcctcacatggaattttctcc
acgccaagcagtgagcccccagggacaaagctctgtctgccctagtgtag
atgtgcatgagcagctgtggggacggcggccatgcaggcctcacagggca
cagcacactctcctgaaacgttggtgagcccgctttactccagagaggca
cctgaatgtggtgatgtgactaagagcaaaataaagctaatgctttaaaa
agtttgagccgggtgtggtggcgaacgcctttaatcccagcacttgggag
gcagaggcaggtggatttctgagtttgaggccagcctggtctacagagtg
agttccaggacagccagggctatacagagaaaccctgtctcgaaaagcca
aaaaaaaaagaaaaaaaaaaaaaagtttggttttgttttggtggtgctat
ggctccatcctggggccgtggctaggcaggtactgagccactaagccacg
cctagcccccagtaggcagctctcctcaatcataaccaaaaccctttaaa
cccccccccccactatcagcgtttgagaaacacacttatagtttctgact
gactgcccaattctacagtcctaagaaacagaccactgcagtctgccagc
agcagagcttctccccgaagccctcctgtctggagcaaaggtcacccgcc
ccaagtcctaaggtctttgtgtcctatgattctgtagaaaggcttttgtc
tatcagctttttttctttctagtactgagcagtttcactactgtagctca
gctgcatcaaactcttaaccctcctatttcagcaccacacttggatccta
actgtggccaccaagtcatctctcagagactcctgggctac
ccatttccttggggtccattgtcttaatagttttgatagtcaagatggag
gacaagtgtctcttgagcatgtcttcagtgctgcctggaatagtctcttc
tccaaagacacccagtactgctttgctccactgttagtatatgcatattg
ctttaaacttctggtgacagttacacggtgttcctctgaaagaacacata
aaacacaaatatgacagcttgtggagaacaggaaggcatccgtgggacct
aacaagctggacgggatgatagagtagtagttagagctatggtatgtgct
atgtgtgaaggtgttctcagtcagacccgtcacctcaggaaacaaagaac
tctcagttttgaagactcggtggaggggaggtgggagaccaactccctcc
ctgcttatgtggcttgcttgagcctagtttcctcgggaaatcagtctggc
ccaggatcccattgtcttctaggcctgggaagatacagtatctggacctc
atctgccagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_21311587_21312691
seq2: B6Ng01-117A13.b_49_1139 (reverse)

seq1  GTAGCCCCAGGAGTCTTCTGAGAGATGACTTGGTGG-CACAGGTTTAGGA  49
      |||| |||||||||| |||||||||||||||||||| |||||  ||||||
seq2  GTAG-CCCAGGAGTC-TCTGAGAGATGACTTGGTGGCCACAG--TTAGGA  46

seq1  TCCAAGTGTTGGGTGACTGAAATAGGAGGGTTGAGAGTTTGATGGCAGCC  99
      |||||||||  |||| |||||||||||||||| |||||||||| |||| |
seq2  TCCAAGTGT--GGTG-CTGAAATAGGAGGGTTAAGAGTTTGAT-GCAG-C  91

seq1  TGAGCTACAGTAGTGAAACCTGCCTCAGTAACTAGAAAGAAAAAAAAGCT  149
      |||||||||||||||||| ||| |||||| ||||||||| ||||||||||
seq2  TGAGCTACAGTAGTGAAA-CTG-CTCAGT-ACTAGAAAG-AAAAAAAGCT  137

seq1  GATAGACAGAAAGCCTTTCTTACAGAATCATAGGACACAAAGACCTTAGG  199
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  GATAGACA-AAAGCCTTTC-TACAGAATCATAGGACACAAAGACCTTAGG  185

seq1  ACTTGGGGCGGGTGACCTTTGCTCCAGACAGGAGGGCTTCGGGGAG-AGC  248
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTGGGGCGGGTGACCTTTGCTCCAGACAGGAGGGCTTCGGGGAGAAGC  235

seq1  TCTGCTGCTGGCAGACTGCAGTGGTCTGTTTCTTAGGACTGTAGAATTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTGGCAGACTGCAGTGGTCTGTTTCTTAGGACTGTAGAATTGG  285

seq1  GCAGTCAGTCAGAAACCTATAAGTGTGTTTCTCAAACGCTGATAGTGGGG  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTCAGAAA-CTATAAGTGTGTTTCTCAAACGCTGATAGTGGGG  334

seq1  GGGGGGGTTTAAAGGGTTTTGGTTATGATTGAGGAGAGCTGCCTACTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGTTTAAAGGGTTTTGGTTATGATTGAGGAGAGCTGCCTACTGGG  384

seq1  GGCTAGGCGTGGCTTAGTGGCTCAGTACCTGCCTAGCCACGGCCCCAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGCGTGGCTTAGTGGCTCAGTACCTGCCTAGCCACGGCCCCAGGA  434

seq1  TGGAGCCATAGCACCACCAAAACAAAACCAAACTTTTTTTTTTTTTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCATAGCACCACCAAAACAAAACCAAACTTTTTTTTTTTTTTCTT  484

seq1  TTTTTTTTGGCTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGCTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  534

seq1  TGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTG  584

seq1  CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTTCGCCACCACACCCGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTTCGCCACCACACCCGGC  634

seq1  TCAAACTTTTTAAAGCATTAGCTTTATTTTGCTCTTAGTCACATCACCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTTTTAAAGCATTAGCTTTATTTTGCTCTTAGTCACATCACCAC  684

seq1  ATTCAGGTGCCTCTCTGGAGTAAAGCGGGCTCACCAACGTTTCAGGAGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTGCCTCTCTGGAGTAAAGCGGGCTCACCAACGTTTCAGGAGAG  734

seq1  TGTGCTGTGCCCTGTGAGGCCTGCATGGCCGCCGTCCCCACAGCTGCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGCCCTGTGAGGCCTGCATGGCCGCCGTCCCCACAGCTGCTCA  784

seq1  TGCACATCTACACTAGGGCAGACAGAGCTTTGTCCCTGGGGGCTCACTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCTACACTAGGGCAGACAGAGCTTTGTCCCTGGGGGCTCACTGC  834

seq1  TTGGCGTGGAGAAAATTCCATGTGAGGATTGTGGGGTCAGCTAGACATGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGTGGAGAAAATTCCATGTGAGGATTGTGGGGTCAGCTAGACATGG  884

seq1  TGGCACCTGCGAACTGGGAGTTCAGAAGTGCTCTTCCCCATCACATAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCTGCGAACTGGGAGTTCAGAAGTGCTCTTCCCCATCACATAAGT  934

seq1  GATACACTCCCCCGTGGGATGGACCCCCTCCACACCCCCAGCCTCTGTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACTCCCCCGTGGGATGGACCCCCTCCACACCCCCAGCCTCTGTGT  984

seq1  GATGGCAGCCTGGGCCTCTGCTTTGACACCTCTCTTCTGTTTTCACTAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGCCTGGGCCTCTGCTTTGACACCTCTCTTCTGTTTTCACTAGG  1034

seq1  TCATGGGCTTTTTGGCAGACAAGAAACCAGAACAGGGCCAGCGGGTCTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCTTTTTGGCAGACAAGAAACCAGAACAGGGCCAGCGGGTCTCT  1084

seq1  GGAATTC  1105
      |||||||
seq2  GGAATTC  1091

seq1: chr12_21164900_21165415
seq2: B6Ng01-117A13.g_67_583

seq1  GAATTCCCATTTCCTTGGGGTCCATTGTCTTAATAGTTTTGATAGTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTCCTTGGGGTCCATTGTCTTAATAGTTTTGATAGTCAAG  50

seq1  ATGGAGGACAAGTGTCTCTTGAGCATGTCTTCAGTGCTGCCTGGAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGACAAGTGTCTCTTGAGCATGTCTTCAGTGCTGCCTGGAATAGT  100

seq1  CTCTTCTCCAAAGACACCCAGTACTGCTTTGCTCCACTGTTAGTATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCCAAAGACACCCAGTACTGCTTTGCTCCACTGTTAGTATATGC  150

seq1  ATATTGCTTTAAACTTCTGGTGACAGTTACACGGTGTTCCTCTGAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCTTTAAACTTCTGGTGACAGTTACACGGTGTTCCTCTGAAAGAA  200

seq1  CACATAAAACACAAATATGACAGCTTGTGGAGAACAGGAAGGCATCCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAACACAAATATGACAGCTTGTGGAGAACAGGAAGGCATCCGTG  250

seq1  GGACCTAACAAGCTGGACGGGATGATAGAGTAGTAGTTAGAGCTATGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAACAAGCTGGACGGGATGATAGAGTAGTAGTTAGAGCTATGGTA  300

seq1  TGTGCTATGTGTGAAGGTGTTCTCAGTCAGACCCGTCACCTCAGGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATGTGTGAAGGTGTTCTCAGTCAGACCCGTCACCTCAGGAAACA  350

seq1  AAGAACTCTCAGTTTTGAAGACTCGGTGGAGGGGAGGTGGGAGACCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCTCAGTTTTGAAGACTCGGTGGAGGGGAGGTGGGAGACCAACT  400

seq1  CCCTCCCTGCTTATGTGGCTTGCTTGAGCCTAGTTTCCTCGGGAAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTGCTTATGTGGCTTGCTTGAGCCTAGTTTCCTCGGGAAATCAG  450

seq1  TCTGGCCCAGGATCCCATTGTCTTCTAGGCCTGGGAAGATACAGAAGCT-  499
      |||||||||||||||||||||||||||||||||||||||||||| | || 
seq2  TCTGGCCCAGGATCCCATTGTCTTCTAGGCCTGGGAAGATACAGTATCTG  500

seq1  GACCTCAGCTGCCAGCT  516
      ||||||| |||||||||
seq2  GACCTCATCTGCCAGCT  517