BAC Information

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BAC

Clone NameB6Ng01-118A04
Chromosome12 (Build37)
Map Location 74,859,387 - 75,005,629
singlet/doubletdoublet
Overlap genePrkch, EG666385, LOC100041489
Upstream gene5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik
Downstream geneHif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971, Kcnh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118A04.bB6Ng01-118A04.g
ACCDH922603DH922604
length1,1121,009
definitionDH922603|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A04, 5' end.DH922604|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,859,387 - 74,860,508)(75,004,991 - 75,005,629)
sequence
ctgtctcacctagtctggcttccagctcagaaccgttctgccttttcctt
ccgagaatgggcattgcaggtgtgcaccacacctggctatgatccggcaa
actctgaatggttgtcacagtccctgacacacagctgccgcttgttcctg
gagtgctctctgaatgaactctgatgggcagaaatgggtactaacgtgga
aaatggagtgttggtaggtggatttcctatgcgtacaaagtacctggaaa
gcctagaaaactcagtttcccctcgaactgaggacctctttcttctatgt
ggttagactattcatggagactcatcttctagggtcccttgaagcaagtt
ctgagagctggtgtacactttttgtgttttaatcccaatagcccaaagaa
gtttgcgctgaaacatttgatttaggaagcccacgtgaccactgtggtct
gactgcctatcacatgctgtacctggtttctttcagagacttgaaactgg
acaatgtgctattggaccacgaaggtcactgtaaactggccgactttgga
atgtgcaaggaggggatttgtaatggggtcaccacagccaccttctgcgg
tacacccgactacattgccccggaggtgagtgtacctgctaggtgtggct
agctctgcttagccctgaatggaaatatggccaggggttatcatgtgcca
tagctccatgggccgcacctacactactacttccaggctcacatacagct
cattgaatgaatggcaactgaaaatgtcaagaattggtctaaatcagagt
tgagagatagtgtaaatcacacaaattgtgtgattggttcgctcacggct
cagtgtcctttaatctctacttggtaatttaattctagcccctgtagcaa
tctaaagaaagtagttgtatctcttccctacggatgaataggcctactgt
gctctccctccacatcagatatttccaagcattgctgtttcatatatatg
tgtcctgtatggcctacgcaatcaccaaatgctgggcacttagcagagag
tcacctagccacacccactgtaaagatgacgaacccgcatgtcagcaggc
ggacttgtgctt
gaattcactaagaagttctaagggctttcctgttttcggcctcatatgca
aagacctgttgttggaggtataactgattggtaaagctgttgcctagcat
atcctgggtttaatattcagtaccacccaaaccaaattacaacacacaca
cacacacacacacacacacacacacacacatacacgcacacaaaacccca
aaattgtcatttccatctccatggcaaggcacaagctaatcaaactgaaa
tctatagttatctaatcagaattgaagtcacagaggaactactgtcctaa
aagtgaaagaaagacagatatagacaaccacagcttgacggctgtcctag
ttggggttatcatggtgataaaggccagggccagagcaccttgctggggg
aagggtttacttggctgacgctttcaaatcagtgctcatcactgaaggaa
gtcagggcaggaattcaaacagggagaaacctgatgcagaggccatggag
gggtgctgctcagtggcctgctcctcatggcttgctctgcctgctttctt
acagaacctagaaccaccagcccagggatgggaccatccacaatgggcta
ggtcctcccccaccaatcactaatttgcctacagcccactcttacagaga
catttgcttaactgaggttccctcctcacagatgacttgggtcaagttga
caaaactatccagcacaccaggaggtcacagtgactgggagcagagccag
tgccacaaccagagcaggagggcttgaaactgcagtccaggactcacact
ggtcaccgcacagaacaacctgcaaacttaaaactccagatccactctcc
cctgtgtactttccttgaggtttgctatcttaagatgtctgaatttccct
ctaggaacacaaccagctccttgctatgaaatcccagaccaatgtccttt
tgcttttctcaaaggggtaccatgcacatgcatatgggggtagtagtgat
cttttagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_74859387_74860508
seq2: B6Ng01-118A04.b_53_1164

seq1  CTGTCTCACCTAGTCTGGCTTCCAGCTCAGAACCGTTCTGCCTTTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCACCTAGTCTGGCTTCCAGCTCAGAACCGTTCTGCCTTTTCCTT  50

seq1  CCGAGAATGGGCATTGCAGGTGTGCACCACACCTGGCTATGATCCGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAATGGGCATTGCAGGTGTGCACCACACCTGGCTATGATCCGGCAA  100

seq1  ACTCTGAATGGTTGTCACAGTCCCTGACACACAGCTGCCGCTTGTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAATGGTTGTCACAGTCCCTGACACACAGCTGCCGCTTGTTCCTG  150

seq1  GAGTGCTCTCTGAATGAACTCTGATGGGCAGAAATGGGTACTAACGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTCTCTGAATGAACTCTGATGGGCAGAAATGGGTACTAACGTGGA  200

seq1  AAATGGAGTGTTGGTAGGTGGATTTCCTATGCGTACAAAGTACCTGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGTGTTGGTAGGTGGATTTCCTATGCGTACAAAGTACCTGGAAA  250

seq1  GCCTAGAAAACTCAGTTTCCCCTCGAACTGAGGACCTCTTTCTTCTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAAAACTCAGTTTCCCCTCGAACTGAGGACCTCTTTCTTCTATGT  300

seq1  GGTTAGACTATTCATGGAGACTCATCTTCTAGGGTCCCTTGAAGCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGACTATTCATGGAGACTCATCTTCTAGGGTCCCTTGAAGCAAGTT  350

seq1  CTGAGAGCTGGTGTACACTTTTTGTGTTTTAATCCCAATAGCCCAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCTGGTGTACACTTTTTGTGTTTTAATCCCAATAGCCCAAAGAA  400

seq1  GTTTGCGCTGAAACATTTGATTTAGGAAGCCCACGTGACCACTGTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCGCTGAAACATTTGATTTAGGAAGCCCACGTGACCACTGTGGTCT  450

seq1  GACTGCCTATCACATGCTGTACCTGGTTTCTTTCAGAGACTTGAAACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTATCACATGCTGTACCTGGTTTCTTTCAGAGACTTGAAACTGG  500

seq1  ACAATGTGCTATTGGACCACGAAGGTCACTGTAAACTGGCCGACTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGCTATTGGACCACGAAGGTCACTGTAAACTGGCCGACTTTGGA  550

seq1  ATGTGCAAGGAGGGGATTTGTAATGGGGTCACCACAGCCACCTTCTGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAGGAGGGGATTTGTAATGGGGTCACCACAGCCACCTTCTGCGG  600

seq1  TACACCCGACTACATTGCCCCGGAGGTGAGTGTACCTGCTAGGTGTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCGACTACATTGCCCCGGAGGTGAGTGTACCTGCTAGGTGTGGCT  650

seq1  AGCTCTGCTTAGCCCTGAATGGAAATATGGCCAGGGGTTATCATGTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCTTAGCCCTGAATGGAAATATGGCCAGGGGTTATCATGTGCCA  700

seq1  TAGCTCCATGGGCCGCACCTACACTACTACTTCCAGGCTCACATACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCATGGGCCGCACCTACACTACTACTTCCAGGCTCACATACAGCT  750

seq1  CATTGAATGAATGGCAACTGAAAATGTCAAGAATTGGTCTAAATCAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTGAATGAATGGCAACTGAAAATGTCAAGAATTGGTCTAAATCAGAG-  799

seq1  TTGAGAGATAGTGTAAATCACACAAATTGTGTGATTGGTTCGCTCACGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATAGTGTAAATCACACAAATTGTGTGATTGGTTCGCTCACGGC  849

seq1  TCAGTGTCCTTTAATCTCTACTTGGTAATTTAATTCTAGCCCCTGTAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAGTGTCCTTTAATCTCTACTTGGTAATTTAATTCTAGCCCCTGTAGC-  898

seq1  AATCTAAAGAAAGTAGTTGTATCTCTTCCCTACGGATGAATAGGCCTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAGAAAGTAGTTGTATCTCTTCCCTACGGATGAATAGGCCTACT  948

seq1  GTGCTCTCCCCTCCACATCAGATATTTCCAAGGCATTGCTGTTTCAATAT  1000
      ||||||| ||||||||||||||||||||||| ||||||||||||| ||||
seq2  GTGCTCT-CCCTCCACATCAGATATTTCCAA-GCATTGCTGTTTC-ATAT  995

seq1  ATATGTGTCCTTGTATTGGCCTACGCAAATCA-CAAATGCTGGGCACTTA  1049
      |||||||||| |||| |||||||||| ||||| |||||||||||||||||
seq2  ATATGTGTCC-TGTA-TGGCCTACGC-AATCACCAAATGCTGGGCACTTA  1042

seq1  GCAGAGAAGTCACCTAG-CACACACACTGTAGAGATGAACGAAACACGCA  1098
      |||||| |||||||||| ||||| ||||||| ||||| ||| ||| ||||
seq2  GCAGAG-AGTCACCTAGCCACACCCACTGTAAAGATG-ACG-AACCCGCA  1089

seq1  TGTCAGCAAGCGGGACTTGTGCTT  1122
      |||||||| || ||||||||||||
seq2  TGTCAGCAGGC-GGACTTGTGCTT  1112

seq1: chr12_75004991_75005629
seq2: B6Ng01-118A04.g_69_707 (reverse)

seq1  GTGGGCTGTAGGCAAATTAGTGATTGGTGGGGGAGGACCTAGCCCATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGTAGGCAAATTAGTGATTGGTGGGGGAGGACCTAGCCCATTGT  50

seq1  GGATGGTCCCATCCCTGGGCTGGTGGTTCTAGGTTCTGTAAGAAAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTCCCATCCCTGGGCTGGTGGTTCTAGGTTCTGTAAGAAAGCAGG  100

seq1  CAGAGCAAGCCATGAGGAGCAGGCCACTGAGCAGCACCCCTCCATGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAGCCATGAGGAGCAGGCCACTGAGCAGCACCCCTCCATGGCCT  150

seq1  CTGCATCAGGTTTCTCCCTGTTTGAATTCCTGCCCTGACTTCCTTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAGGTTTCTCCCTGTTTGAATTCCTGCCCTGACTTCCTTCAGTG  200

seq1  ATGAGCACTGATTTGAAAGCGTCAGCCAAGTAAACCCTTCCCCCAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACTGATTTGAAAGCGTCAGCCAAGTAAACCCTTCCCCCAGCAAG  250

seq1  GTGCTCTGGCCCTGGCCTTTATCACCATGATAACCCCAACTAGGACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGGCCCTGGCCTTTATCACCATGATAACCCCAACTAGGACAGCC  300

seq1  GTCAAGCTGTGGTTGTCTATATCTGTCTTTCTTTCACTTTTAGGACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTGTGGTTGTCTATATCTGTCTTTCTTTCACTTTTAGGACAGTA  350

seq1  GTTCCTCTGTGACTTCAATTCTGATTAGATAACTATAGATTTCAGTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTGTGACTTCAATTCTGATTAGATAACTATAGATTTCAGTTTGA  400

seq1  TTAGCTTGTGCCTTGCCATGGAGATGGAAATGACAATTTTGGGGTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGTGCCTTGCCATGGAGATGGAAATGACAATTTTGGGGTTTTGT  450

seq1  GTGCGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTG  500

seq1  TAATTTGGTTTGGGTGGTACTGAATATTAAACCCAGGATATGCTAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGTTTGGGTGGTACTGAATATTAAACCCAGGATATGCTAGGCAA  550

seq1  CAGCTTTACCAATCAGTTATACCTCCAACAACAGGTCTTTGCATATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTACCAATCAGTTATACCTCCAACAACAGGTCTTTGCATATGAGG  600

seq1  CCGAAAACAGGAAAGCCCTTAGAACTTCTTAGTGAATTC  639
      |||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAACAGGAAAGCCCTTAGAACTTCTTAGTGAATTC  639