BAC Information

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BAC

Clone NameB6Ng01-118C13
Chromosome12 (Build37)
Map Location 111,740,583 - 111,875,968
singlet/doubletdoublet
Overlap genePpp2r5c, 9430024F10Rik, Dync1h1
Upstream geneGtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799
Downstream gene1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C13.bB6Ng01-118C13.g
ACCDH922712DH922713
length1,209175
definitionDH922712|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C13, 5' end.DH922713|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,874,752 - 111,875,968)(111,740,583 - 111,740,759)
sequence
gaattctctacttagtatttcccggctgtagatgacatggctaactgaag
tcttgaactgtggaacgggggacacagctaaggagcacagacgggtgggt
actcacattgggaggcaggctaaggcgctctccattaggcagcgtcagga
gcttgttgtcatccagcacggagttcaggttctccacccactcggggtcc
acatcgccatcaaagacaatccactggcgtttctgcagctcacctctcac
attgtctatgatcctagtttacaaaaaaatttcaaaggcttactcaagtc
agctttgaaatgccccccctccggatggatcctgttatttgtgtgaacag
agtgactgcatgcgcttggatcctacagtcccggaaatgcaaacatcaaa
cagggcaaacatactttctcagcacgtgtgtgaagagtccgtctgtccac
tccctggtgttgggatccaaggttccgtagaggtggtctttgctgatggc
cttggggtcaattatgtgggccacgccctccacaccctcaagcctctcta
gagccttcagcagcactcgccaggccatgctcttcccacttcctgaaggc
ccaaccatcatcaggccgtggttaatctgcgtgatctgatagagctggag
aacctgcagggccagaggtcagcactgagaccgttaggtaagagacacgc
aggctctgtggcgcttctggtgacgctgagcaagaaatggaatgtcttaa
tccctaaagccaggaacggcaagaatctgcgggaaccacatctcaaaggc
atcctacacagggaggcagcggggctagcgggatagacggcttctatgct
ctctgtatacggaaacatccgaagattctccaaggatgagaaaagagcaa
atgcaaaggactatttcatatagagttctcaggtcaacacacgcagtgta
aataacagcagagaaaggaagtgcagctgactgtcaactgaagacttaac
tctcggcctgggaaatccttaaaggcataagcacttcattacaatcatac
ttttagtcagcattttagaggtaatgctacatgtaagagaaatgttttcc
taccttggggtagtaaaggacattcagcaagccttgggcaattctagtca
ctctatgcccacctagcctcggtgaaccgttcctgaatgggcgggagacg
cggttacag
ttacagggcggcctctgtagggtggacatggttgggggcctggcagagaa
gtgtgggtgggtgggtgataaggggttggttgtatgtctgtcggggcttt
cctttgagtgttcacttgtcagacatttttgagcactttgtactgttata
ttttcaattgagcagcaaatggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_111874752_111875968
seq2: B6Ng01-118C13.b_48_1256 (reverse)

seq1  CTGTAACTGCTGCTCCCGCCCATCTGAGGAGACCGGTTCACCGAGGCTAG  50
      ||||||| ||  ||||||||||| | ||  || |||||||||||||||||
seq2  CTGTAACCGCGTCTCCCGCCCAT-TCAG--GAACGGTTCACCGAGGCTAG  47

seq1  TGTGGGCATAGAGTGACTTAGATTTGCCCAAGGCTTGCTTGAATGTCCCT  100
       |||||||||||||||| |||| ||||||||||||||| ||||||| |||
seq2  -GTGGGCATAGAGTGAC-TAGAATTGCCCAAGGCTTGC-TGAATGT-CCT  93

seq1  TTACTAACACCCAGGTAGGAAAACATGTCTCTTACATGTAGCACTACCTC  150
      ||||| || || |||||||||||||| |||||||||||||||| ||||||
seq2  TTACT-ACCCCAAGGTAGGAAAACATTTCTCTTACATGTAGCATTACCTC  142

seq1  TAAAAATGCTGACTAAAAGTATGATTGTAATGAAGTGCTTATGCCTTTAA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAATGCTGACTAAAAGTATGATTGTAATGAAGTGCTTATGCCTTTAA  191

seq1  GGATTTCCCAGGCCGAGAGTTAAGTC-TCAGTTGACAGTCAGCTGCACTT  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGATTTCCCAGGCCGAGAGTTAAGTCTTCAGTTGACAGTCAGCTGCACTT  241

seq1  CCTTTCTCTGCTGTTATTTACACTGCGTGTGTTGACCTGAGAACTCTATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTGCTGTTATTTACACTGCGTGTGTTGACCTGAGAACTCTATA  291

seq1  TGAAATAGTCCTTTGCATTTGCTCTTTTCTCATCCTTGGAGAATCTTCGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGTCCTTTGCATTTGCTCTTTTCTCATCCTTGGAGAATCTTCGG  341

seq1  ATGTTTCCGTATACAGAGAGCATAGAAGCCGTCTATCCCGCTAGCCCCGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCGTATACAGAGAGCATAGAAGCCGTCTATCCCGCTAGCCCCGC  391

seq1  TGCCTCCCTGTGTAGGATGCCTTTGAGATGTGGTTCCCGCAGATTCTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCTGTGTAGGATGCCTTTGAGATGTGGTTCCCGCAGATTCTTGC  441

seq1  CGTTCCTGGCTTTAGGGATTAAGACATTCCATTTCTTGCTCAGCGTCACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTGGCTTTAGGGATTAAGACATTCCATTTCTTGCTCAGCGTCACC  491

seq1  AGAAGCGCCACAGAGCCTGCGTGTCTCTTACCTAACGGTCTCAGTGCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCGCCACAGAGCCTGCGTGTCTCTTACCTAACGGTCTCAGTGCTGA  541

seq1  CCTCTGGCCCTGCAGGTTCTCCAGCTCTATCAGATCACGCAGATTAACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCCCTGCAGGTTCTCCAGCTCTATCAGATCACGCAGATTAACCA  591

seq1  CGGCCTGATGATGGTTGGGCCTTCAGGAAGTGGGAAGAGCATGGCCTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGATGATGGTTGGGCCTTCAGGAAGTGGGAAGAGCATGGCCTGGC  641

seq1  GAGTGCTGCTGAAGGCTCTAGAGAGGCTTGAGGGTGTGGAGGGCGTGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGCTGAAGGCTCTAGAGAGGCTTGAGGGTGTGGAGGGCGTGGCC  691

seq1  CACATAATTGACCCCAAGGCCATCAGCAAAGACCACCTCTACGGAACCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATTGACCCCAAGGCCATCAGCAAAGACCACCTCTACGGAACCTT  741

seq1  GGATCCCAACACCAGGGAGTGGACAGACGGACTCTTCACACACGTGCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCAACACCAGGGAGTGGACAGACGGACTCTTCACACACGTGCTGA  791

seq1  GAAAGTATGTTTGCCCTGTTTGATGTTTGCATTTCCGGGACTGTAGGATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATGTTTGCCCTGTTTGATGTTTGCATTTCCGGGACTGTAGGATC  841

seq1  CAAGCGCATGCAGTCACTCTGTTCACACAAATAACAGGATCCATCCGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGCATGCAGTCACTCTGTTCACACAAATAACAGGATCCATCCGGAG  891

seq1  GGGGGGCATTTCAAAGCTGACTTGAGTAAGCCTTTGAAATTTTTTTGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCATTTCAAAGCTGACTTGAGTAAGCCTTTGAAATTTTTTTGTAA  941

seq1  ACTAGGATCATAGACAATGTGAGAGGTGAGCTGCAGAAACGCCAGTGGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGATCATAGACAATGTGAGAGGTGAGCTGCAGAAACGCCAGTGGAT  991

seq1  TGTCTTTGATGGCGATGTGGACCCCGAGTGGGTGGAGAACCTGAACTCCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGATGGCGATGTGGACCCCGAGTGGGTGGAGAACCTGAACTCCG  1041

seq1  TGCTGGATGACAACAAGCTCCTGACGCTGCCTAATGGAGAGCGCCTTAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATGACAACAAGCTCCTGACGCTGCCTAATGGAGAGCGCCTTAGC  1091

seq1  CTGCCTCCCAATGTGAGTACCCACCCGTCTGTGCTCCTTAGCTGTGTCCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCAATGTGAGTACCCACCCGTCTGTGCTCCTTAGCTGTGTCCC  1141

seq1  CCGTTCCACAGTTCAAGACTTCAGTTAGCCATGTCATCTACAGCCGGGAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCCACAGTTCAAGACTTCAGTTAGCCATGTCATCTACAGCCGGGAA  1191

seq1  ATACTAAGTAGAGAATTC  1217
      ||||||||||||||||||
seq2  ATACTAAGTAGAGAATTC  1209

seq1: chr12_111740583_111740759
seq2: B6Ng01-118C13.g_75_249

seq1  TTACAGGGCGGCCTCTGTAGGGTGGACATGGTTGGGGGCCTGGCAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGCGGCCTCTGTAGGGTGGACATGGTTGGGGGCCTGGCAGAGAA  50

seq1  GTGTGGGTGGGTGGGTGATAAGGGGTTGGTTGTATGTCTGTCGGGGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTGGGTGGGTGATAAGGGGTTGGTTGTATGTCTGTCGGGGCTTT  100

seq1  CCTTTGAGTGTTCACTTGTCAGACATTTCTGAGCACATTTGTACTGTTAA  150
      |||||||||||||||||||||||||||| ||||||| ||||||||||| |
seq2  CCTTTGAGTGTTCACTTGTCAGACATTTTTGAGCAC-TTTGTACTGTT-A  148

seq1  CAGTTTCAAGTGAGCAGCAAATGGCAG  177
       | |||||| |||||||||||||||||
seq2  TATTTTCAATTGAGCAGCAAATGGCAG  175