BAC Information

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BAC

Clone NameB6Ng01-119C18
Chromosome12 (Build37)
Map Location 39,125,768 - 39,267,694
singlet/doubletdoublet
Overlap geneDgkb
Upstream geneA530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119C18.bB6Ng01-119C18.g
ACCDH923457DH923458
length1,2291,082
definitionDH923457|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C18, 5' end.DH923458|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,266,463 - 39,267,694)(39,125,768 - 39,126,876)
sequence
gaattctagttcatttagcttctttaatctttgtgagtagagagatgtct
cagcagtgaagacaatggttgccattctagaggacctgagcatggttcct
agaatccacatggccactcacaactatatataactccactgctaggtgat
ctaacactcacttctggcttcttgggcaatgttacatgggcaaaatgttt
atatatactaaatttttaaaaagatgaatatttgaactttttttcaggtg
gttaatacatgttggtttccttaggattaattatctattttgttagtatg
tttgcctcaggtttcctgatatgttgtgacggttgaagtcttgttttgat
gtactatcatttgaagacactatatcccatcttctttacagatactttgg
caagaaacattctcctcacattacccctgccccctcagagattttgaata
aacaaactcttcagcaaattgtgtgcgttagcaagcacacaatagagtta
cctgttatcctggctcagtgagtgggtatcctggtactaggtaagttgct
ttcccagaatcaagtttgacaataataattatagtagtgatcttagaatc
tgggtctgtgggattatctaaccctggagcagtctcataatatgggtcct
tcaaaactttcttggaatgtggatgtctgtaagctagcctaggaccatat
ttaactggattagagtttttagggtctatggtaaatgtgtactccttata
ttctttcatatgtagagaatttgtcatcctatgatatgttagataaatca
taagaagggaatatgtgagtagtaaagaatatgcttcctgttctcttcaa
tgaacctctttttattatgctcctccaagctactgtaaactaccatttgg
attgctctactcttgtgaagaaagtacatttatatgtagatgatgagtga
aactgttctatgagagtcaaatgctaaaccttctaatctgttattcggct
gaactcacctaggagtcatttgatttctctgtctgcatcttccacttgtc
tgcccaacattatctctgaatggctaaaattcctcaatgtacctattggt
cagttactaacatctggaaaactaccatttcttatcccctcactctttat
ttccctattctgaaatctctggcaatcaacatatccctcctcctttccgc
acacactgcatagacattattttttatta
gaattctccgcaattctaggcagcagtggttcctagcagggagaatttga
aaattacttcaactggcaatacaaatctttaaaatgggaataaaagaaag
actttcttcctagttctattgagggaatgaacctgcaaggtatcaacgca
tgtgccatcaaaatgatggttgtttatttgcatgtttagccccaacattg
ttttctaggtattttggtttcgtggtatgtcctgtcccctccctgttttc
tctgcatactaagggtcattaaagtgaaaggctgtagtctataagaagcc
agaaggcttctatttgatagatcaattaaagtgagcactggtgttcacaa
tctgtttctgttttccttttccttcctcttttgtcccctgtccccctcaa
gatgcctgttagcatctctttagaaaaggccatttctcccagggacacag
tgcacctgtacatgtcgataaatttgctggagttctgcaaaagccattgg
cagtagttgggcagaaattctgtacaccaggagcatcaacaaataatctg
tgagctgtatttccctaactgggctgccttgtctggcctcagtgggagag
attgcagctaggcctgagagacttgatgtgccagagggatacccacaggg
gtcttggggggaagggggttccaccctctcagaggagaagggggggaaga
gataaggagatggactatgtaaggggagacctggagtggagcatgatcct
gggtataaagtggaactacatctgtggtctgattttcattctgtctcacc
cactcttgactaaaatctctatttgtgcaatgattcctgtggtcaggatt
gccctaccaccaccagtccctcctgcttgataaatgagaagggaataaga
gttgatgcaggcatcatacattagggcaaaagccacagcagccagatttt
cctacgtgttgagagttgagacgaccattttctctatctggaattaaaga
gtactgctagaaaaagtatgaaatttgaagatcttggaattcttccgaat
gtgaaatcccacgtaaagaaaacaacgctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39266463_39267694
seq2: B6Ng01-119C18.b_44_1272 (reverse)

seq1  TAATAAAAAATATAGTCCTATGCAGTGTGT--AGAAAGAGAGAGAGGTA-  47
      ||||||||||||  || |||||||||||||   |||||   ||| | || 
seq2  TAATAAAAAATAATGT-CTATGCAGTGTGTGCGGAAAGGAGGAGGGATAT  49

seq1  GTTGGATGCCAGAGATATTTCAG-ATAGAGAAAT-AAGAGTGA-GAGATA  94
      ||||  ||||||||  ||||||| |||| ||||| |||||||| | ||||
seq2  GTTGATTGCCAGAG--ATTTCAGAATAGGGAAATAAAGAGTGAGGGGATA  97

seq1  AGAAATGGTAGGTATTTCAGATGTTAGTAACTGACCAATAGGTACATTGA  144
      |||||||||| || || |||||||||||||||||||||||||||||||||
seq2  AGAAATGGTA-GTTTTCCAGATGTTAGTAACTGACCAATAGGTACATTGA  146

seq1  GGAAATATTAGCCAATTCAGAGATAATGTTGGGGCAGACAAGTGG-AGAT  193
      || ||| |||||| |||||||||||||||| |||||||||||||| ||||
seq2  GG-AATTTTAGCC-ATTCAGAGATAATGTT-GGGCAGACAAGTGGAAGAT  193

seq1  GCAGACAGAGAAATCAAATGACTCCTTAGGTGAGTTCAGCCGAATAACAG  243
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAGACAGAGAAATCAAATGACTCC-TAGGTGAGTTCAGCCGAATAACAG  242

seq1  ATTAGAAGGTTTTAGCATTTGACTCTTCATAGAACAGTTTCACTCATCAT  293
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  ATTAGAAGG-TTTAGCATTTGACTC-TCATAGAACAGTTTCACTCATCAT  290

seq1  CTACATATAAATGTACTTTCTTCACAAGAGTAGAGCAATCCAAATGGTAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATAAATGTACTTTCTTCACAAGAGTAGAGCAATCCAAATGGTAG  340

seq1  TTTACAGTAGCTTGGAGGAGCATAATAAAAAGAGGTTCATTGAAGAGAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTAGCTTGGAGGAGCATAATAAAAAGAGGTTCATTGAAGAGAAC  390

seq1  AGGAAGCATATTCTTTACTACTCACATATTCCCTTCTTATGATTTATCTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCATATTCTTTACTACTCACATATTCCCTTCTTATGATTTATCTA  440

seq1  ACATATCATAGGATGACAAATTCTCTACATATGAAAGAATATAAGGAGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCATAGGATGACAAATTCTCTACATATGAAAGAATATAAGGAGTA  490

seq1  CACATTTACCATAGACCCTAAAAACTCTAATCCAGTTAAATATGGTCCTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTACCATAGACCCTAAAAACTCTAATCCAGTTAAATATGGTCCTA  540

seq1  GGCTAGCTTACAGACATCCACATTCCAAGAAAGTTTTGAAGGACCCATAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCTTACAGACATCCACATTCCAAGAAAGTTTTGAAGGACCCATAT  590

seq1  TATGAGACTGCTCCAGGGTTAGATAATCCCACAGACCCAGATTCTAAGAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACTGCTCCAGGGTTAGATAATCCCACAGACCCAGATTCTAAGAT  640

seq1  CACTACTATAATTATTATTGTCAAACTTGATTCTGGGAAAGCAACTTACC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTATAATTATTATTGTCAAACTTGATTCTGGGAAAGCAACTTACC  690

seq1  TAGTACCAGGATACCCACTCACTGAGCCAGGATAACAGGTAACTCTATTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCAGGATACCCACTCACTGAGCCAGGATAACAGGTAACTCTATTG  740

seq1  TGTGCTTGCTAACGCACACAATTTGCTGAAGAGTTTGTTTATTCAAAATC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGCTAACGCACACAATTTGCTGAAGAGTTTGTTTATTCAAAATC  790

seq1  TCTGAGGGGGCAGGGGTAATGTGAGGAGAATGTTTCTTGCCAAAGTATCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGGGCAGGGGTAATGTGAGGAGAATGTTTCTTGCCAAAGTATCT  840

seq1  GTAAAGAAGATGGGATATAGTGTCTTCAAATGATAGTACATCAAAACAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAGATGGGATATAGTGTCTTCAAATGATAGTACATCAAAACAAG  890

seq1  ACTTCAACCGTCACAACATATCAGGAAACCTGAGGCAAACATACTAACAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACCGTCACAACATATCAGGAAACCTGAGGCAAACATACTAACAA  940

seq1  AATAGATAATTAATCCTAAGGAAACCAACATGTATTAACCACCTGAAAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAATTAATCCTAAGGAAACCAACATGTATTAACCACCTGAAAAA  990

seq1  AAGTTCAAATATTCATCTTTTTAAAAATTTAGTATATATAAACATTTTGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAATATTCATCTTTTTAAAAATTTAGTATATATAAACATTTTGC  1040

seq1  CCATGTAACATTGCCCAAGAAGCCAGAAGTGAGTGTTAGATCACCTAGCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAACATTGCCCAAGAAGCCAGAAGTGAGTGTTAGATCACCTAGCA  1090

seq1  GTGGAGTTATATATAGTTGTGAGTGGCCATGTGGATTCTAGGAACCATGC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTATATATAGTTGTGAGTGGCCATGTGGATTCTAGGAACCATGC  1140

seq1  TCAGGTCCTCTAGAATGGCAACCATTGTCTTCACTGCTGAGACATCTCTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCTCTAGAATGGCAACCATTGTCTTCACTGCTGAGACATCTCTC  1190

seq1  TACTCACAAAGATTAAAGAAGCTAAATGAACTAGAATTC  1232
      |||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAAAGATTAAAGAAGCTAAATGAACTAGAATTC  1229

seq1: chr12_39125768_39126876
seq2: B6Ng01-119C18.g_64_1145

seq1  GAATTCTCCGCAATTCTAGGCAGCAGTGGTTCCTAGCAGGGAGAATTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGCAATTCTAGGCAGCAGTGGTTCCTAGCAGGGAGAATTTGA  50

seq1  AAATTACTTCAACTGGCAATACAAATCTTTAAAATGGGAATAAAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTCAACTGGCAATACAAATCTTTAAAATGGGAATAAAAGAAAG  100

seq1  ACTTTCTTCCTAGTTCTATTGAGGGAATGAACCTGCAAGGTATCAACGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTCCTAGTTCTATTGAGGGAATGAACCTGCAAGGTATCAACGCA  150

seq1  TGTGCCATCAAAATGATGGTTGTTTATTTGCATGTTTAGCCCCAACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATCAAAATGATGGTTGTTTATTTGCATGTTTAGCCCCAACATTG  200

seq1  TTTTCTAGGTATTTTGGTTTCGTGGTATGTCCTGTCCCCTCCCTGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGGTATTTTGGTTTCGTGGTATGTCCTGTCCCCTCCCTGTTTTC  250

seq1  TCTGCATACTAAGGGTCATTAAAGTGAAAGGCTGTAGTCTATAAGAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATACTAAGGGTCATTAAAGTGAAAGGCTGTAGTCTATAAGAAGCC  300

seq1  AGAAGGCTTCTATTTGATAGATCAATTAAAGTGAGCACTGGTGTTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTTCTATTTGATAGATCAATTAAAGTGAGCACTGGTGTTCACAA  350

seq1  TCTGTTTCTGTTTTCCTTTTCCTTCCTCTTTTGTCCCCTGTCCCCCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTGTTTTCCTTTTCCTTCCTCTTTTGTCCCCTGTCCCCCTCAA  400

seq1  GATGCCTGTTAGCATCTCTTTAGAAAAGGCCATTTCTCCCAGGGACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGTTAGCATCTCTTTAGAAAAGGCCATTTCTCCCAGGGACACAG  450

seq1  TGCACCTGTACATGTCGATAAATTTGCTGGAGTTCTGCAAAAGCCATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTGTACATGTCGATAAATTTGCTGGAGTTCTGCAAAAGCCATTGG  500

seq1  CAGTAGTTGGGCAGAAATTCTGTACACCAGGAGCATCAACAAATAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTGGGCAGAAATTCTGTACACCAGGAGCATCAACAAATAATCTG  550

seq1  TGAGCTGTATTTCCCTAACTGGGCTGCCTTGTCTGGCCTCAGTGGGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTATTTCCCTAACTGGGCTGCCTTGTCTGGCCTCAGTGGGAGAG  600

seq1  ATTGCAGCTAGGCCTGAGAGACTTGATGTGCCAGAGGGATACCCACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGCTAGGCCTGAGAGACTTGATGTGCCAGAGGGATACCCACAGGG  650

seq1  GTCTTGGGGGGAAGGGGGTTCCACCCTCTCAGAGGAGAAGGGGGGGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGGGGAAGGGGGTTCCACCCTCTCAGAGGAGAAGGGGGGGAAGA  700

seq1  GATAAGGAGATGGACTATGTAAGGGGAGACCTGGAGTGGAGCAATGATCC  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATAAGGAGATGGACTATGTAAGGGGAGACCTGGAGTGGAGC-ATGATCC  749

seq1  TGGGTATAAAGTGGAACTACATCTGTGGTCTGATTTTCATTCTGTCTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATAAAGTGGAACTACATCTGTGGTCTGATTTTCATTCTGTCTCAC  799

seq1  CCACTCTTGACTAAAATCTCTATTTGTGCAATGATTCCTGTGGTCAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTGACTAAAATCTCTATTTGTGCAATGATTCCTGTGGTCAGGAT  849

seq1  TGCCTTACCACCACCAGTCCCTCCTGCTTGATAAATGAGAAGGGAATAAG  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTACCACCACCAGTCCCTCCTGCTTGATAAATGAGAAGGGAATAAG  899

seq1  AGTTGATGCAGGCATCATACATTAGGGCAAAAGGCCACAAGCAGCCCAGA  950
      |||||||||||||||||||||||||||||||| ||||| ||||| |||||
seq2  AGTTGATGCAGGCATCATACATTAGGGCAAAA-GCCAC-AGCAG-CCAGA  946

seq1  TTTTCCCTACGTGTGGAGGAGGTGTGAGACGAACCATTTTCTTCTTATCT  1000
      |||| ||||||||| || |||   ||||||| ||||||||||   |||||
seq2  TTTT-CCTACGTGTTGA-GAG--TTGAGACG-ACCATTTTCT--CTATCT  989

seq1  TGGGAATTTAAACAGAGATACTTGCTAAGAAAAAGTATGAAATTTGAAGA  1050
        ||||||   | |||| ||| |||| |||||||||||||||||||||||
seq2  --GGAATT---AAAGAG-TAC-TGCT-AGAAAAAGTATGAAATTTGAAGA  1031

seq1  AATCTTTTGAAAATCATATCTGAAAGTGAAATACACCAGTAAAGAAAACA  1100
          | ||| || ||   || ||| ||||||| | |  ||||||||||||
seq2  ----TCTTGGAATTC--TTCCGAATGTGAAAT-CCCACGTAAAGAAAACA  1074

seq1  ACAGCTGTT  1109
      || ||||||
seq2  AC-GCTGTT  1082