BAC Information

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BAC

Clone NameB6Ng01-119L11
Chromosome12 (Build37)
Map Location 12,234,235 - 12,367,736
singlet/doubletdoublet
Overlap geneD12Ertd553e
Upstream gene5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119L11.bB6Ng01-119L11.g
ACCDH923857DH923858
length1,049583
definitionDH923857|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L11, 5' end.DH923858|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,366,674 - 12,367,736)(12,234,235 - 12,234,817)
sequence
gaattcttctcttcttgtcacgggcttctccgttcctatacttccaggat
atttacctacaaatctaccaccatgtttactttagttactgttctaagaa
aattctcatccctctcatttgctcatttctgatcattctccactcccttt
gctttcatgttatttctaacagcagagtcatttaaataattctctatagc
aggagttgataagctatgacccataggctaaatctggatcactgttttct
tttttaatcaataaagttttatttaaaaggtatatgcactaatcccttcc
tgtactgagtagagctacactggtgttggtactatgatgtaaactctagt
aaagtcagagcagctaacaagataaatatatctactgtctaacatattac
aggaaaatttgacatcactgttttgatgttctcataagcctttagtatcc
ttacagggactgtctcaagactttgttaggcatcccaccaatggaaacac
atcatcttcaggggcaacaaggtataccctagcctgctttgacggatgca
cctttctctgtctgttgaggtagaatccagtttcttggaatttcagctca
ctcctttcagatgcacattgaggaaacagaatttgagttctcttctacct
gagagcctgaggcaaccttctttgcttgtgaaatctgtttgcgtcactcc
cttagctggtctgaacattgaatcttatcaatatcccagtgatgatttta
actttgggtttcctcttacaatgtggcacttgttttagtggtaaattaaa
gcagaagttgatggctaccctttccgttctagatactcgatatgaacaaa
taaaaccccaagtcctggcagtgatcacaccgtactgctcgtggtaccca
gccagttgtcaatctcatttgccttcaccccagcttcagtagccatccta
tttacagttttacttgtttaaagctaagtaaaaatgctaggttatttcta
cattttatattagctaattagtttttgaggggtgagaaatgtggcttta
gaattctttagactctggaaaacgggccagatgttagaagaatggaaggg
gcgagaaaaagcaaaggatggaagaaaaaatcttgcttagaaactcagaa
tttctagtgcagggcggtagtaactgccaactcttccacagaaaagaaac
taagcctgggagcaacagctccaagagcatcaccctctaactttagagac
aaagggaacaaaggtcatgggcacctacccacttctccggtcacacagac
agctggtagccagacattcacaccaaaaggacacatgtgttctctttcca
cagaaatccttttgctgatatgtgcaccctttgacctttcgtttatgttt
tgcgcaattaagaattgagaccaggggctggagaaatggctcagcagtta
aaagcactggatgttcttccagaggactcagactcaatactcagcactca
caaggcagctcacaactgtctggagctctagttccagatgatgtgacact
caatacaaacatacaagtgggaaaaacaccaatgcacataaaacaaagga
gagagagagggagagagagaggggggggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12366674_12367736
seq2: B6Ng01-119L11.b_45_1093 (reverse)

seq1  TAAAGCCACAATTTCCTCACCCCCTCCAAAAAACTTAATTAGCTTAATAT  50
      ||||||||||  || |||| ||||||  |||||| |||||||| ||||||
seq2  TAAAGCCACA--TTTCTCA-CCCCTC--AAAAAC-TAATTAGC-TAATAT  43

seq1  AAAATGTAAGAAAATAAACCTAGCATTTTTACTTTAGCTTTAAAAACAAG  100
      ||||||| |||||   |||||||||||||||| ||||||||  |||||||
seq2  AAAATGT-AGAAA--TAACCTAGCATTTTTAC-TTAGCTTT--AAACAAG  87

seq1  TAAAACTGTAAATAGGATGGCTACTGAAGCTGGGGTGAAGGCAAATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTAAATAGGATGGCTACTGAAGCTGGGGTGAAGGCAAATGAGA  137

seq1  TTGACAAACTGGCTGGGTACCACGAGCAGTACGGTGTGATCACTGCCAGG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAC-AACTGGCTGGGTACCACGAGCAGTACGGTGTGATCACTGCCAGG  186

seq1  ACTTGGGGTTTTATTTGTTCATATCGAGTATCTAGAACGGAAAGGGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGGTTTTATTTGTTCATATCGAGTATCTAGAACGGAAAGGGTAGC  236

seq1  CATCAACTTCTGCTTTAATTTACCACTAAAACAAGTGCCACATTGTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTTCTGCTTTAATTTACCACTAAAACAAGTGCCACATTGTAAGA  286

seq1  GGAAACCCAAAGTTAAAATCATCACTGGGATATTGATAAGATTCAATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCAAAGTTAAAATCATCACTGGGATATTGATAAGATTCAATGTT  336

seq1  CAGACCAGCTAAGGGAGTGACGCAAACAGATTTCACAAGCAAAGAAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGCTAAGGGAGTGACGCAAACAGATTTCACAAGCAAAGAAGGTT  386

seq1  GCCTCAGGCTCTCAGGTAGAAGAGAACTCAAATTCTGTTTCCTCAATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGCTCTCAGGTAGAAGAGAACTCAAATTCTGTTTCCTCAATGTG  436

seq1  CATCTGAAAGGAGTGAGCTGAAATTCCAAGAAACTGGATTCTACCTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAGGAGTGAGCTGAAATTCCAAGAAACTGGATTCTACCTCAAC  486

seq1  AGACAGAGAAAGGTGCATCCGTCAAAGCAGGCTAGGGTATACCTTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAAAGGTGCATCCGTCAAAGCAGGCTAGGGTATACCTTGTTGC  536

seq1  CCCTGAAGATGATGTGTTTCCATTGGTGGGATGCCTAACAAAGTCTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGATGATGTGTTTCCATTGGTGGGATGCCTAACAAAGTCTTGAG  586

seq1  ACAGTCCCTGTAAGGATACTAAAGGCTTATGAGAACATCAAAACAGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCTGTAAGGATACTAAAGGCTTATGAGAACATCAAAACAGTGAT  636

seq1  GTCAAATTTTCCTGTAATATGTTAGACAGTAGATATATTTATCTTGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTTTCCTGTAATATGTTAGACAGTAGATATATTTATCTTGTTAG  686

seq1  CTGCTCTGACTTTACTAGAGTTTACATCATAGTACCAACACCAGTGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGACTTTACTAGAGTTTACATCATAGTACCAACACCAGTGTAGC  736

seq1  TCTACTCAGTACAGGAAGGGATTAGTGCATATACCTTTTAAATAAAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCAGTACAGGAAGGGATTAGTGCATATACCTTTTAAATAAAACTT  786

seq1  TATTGATTAAAAAAGAAAACAGTGATCCAGATTTAGCCTATGGGTCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTAAAAAAGAAAACAGTGATCCAGATTTAGCCTATGGGTCATAG  836

seq1  CTTATCAACTCCTGCTATAGAGAATTATTTAAATGACTCTGCTGTTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAACTCCTGCTATAGAGAATTATTTAAATGACTCTGCTGTTAGAA  886

seq1  ATAACATGAAAGCAAAGGGAGTGGAGAATGATCAGAAATGAGCAAATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGAAAGCAAAGGGAGTGGAGAATGATCAGAAATGAGCAAATGAG  936

seq1  AGGGATGAGAATTTTCTTAGAACAGTAACTAAAGTAAACATGGTGGTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAGAATTTTCTTAGAACAGTAACTAAAGTAAACATGGTGGTAGA  986

seq1  TTTGTAGGTAAATATCCTGGAAGTATAGGAACGGAGAAGCCCGTGACAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGTAAATATCCTGGAAGTATAGGAACGGAGAAGCCCGTGACAAG  1036

seq1  AAGAGAAGAATTC  1063
      |||||||||||||
seq2  AAGAGAAGAATTC  1049

seq1: chr12_12234235_12234817
seq2: B6Ng01-119L11.g_67_649

seq1  GAATTCTTTAGACTCTGGAAAACGGGCCAGATGTTAGAAGAATGGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGACTCTGGAAAACGGGCCAGATGTTAGAAGAATGGAAGGG  50

seq1  GCGAGAAAAAGCAAAGGATGGAAGAAAAAATCTTGCTTAGAAACTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAAAAAGCAAAGGATGGAAGAAAAAATCTTGCTTAGAAACTCAGAA  100

seq1  TTTCTAGTGCAGGGCGGTAGTAACTGCCAACTCTTCCACAGAAAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTGCAGGGCGGTAGTAACTGCCAACTCTTCCACAGAAAAGAAAC  150

seq1  TAAGCCTGGGAGCAACAGCTCCAAGAGCATCACCCTCTAACTTTAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGGGAGCAACAGCTCCAAGAGCATCACCCTCTAACTTTAGAGAC  200

seq1  AAAGGGAACAAAGGTCATGGGCACCTACCCACTTCTCCGGTCACACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAACAAAGGTCATGGGCACCTACCCACTTCTCCGGTCACACAGAC  250

seq1  AGCTGGTAGCCAGACATTCACACCAAAAGGACACATGTGTTCTCTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTAGCCAGACATTCACACCAAAAGGACACATGTGTTCTCTTTCCA  300

seq1  CAGAAATCCTTTTGCTGATATGTGCACCCTTTGACCTTTCGTTTATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCTTTTGCTGATATGTGCACCCTTTGACCTTTCGTTTATGTTT  350

seq1  TGCGCAATTAAGAATTGAGACCAGGGGCTGGAGAAATGGCTCAGCAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAATTAAGAATTGAGACCAGGGGCTGGAGAAATGGCTCAGCAGTTA  400

seq1  AAAGCACTGGATGTTCTTCCAGAGGACTCAGACTCAATACTCAGCACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTGGATGTTCTTCCAGAGGACTCAGACTCAATACTCAGCACTCA  450

seq1  CAAGGCAGCTCACAACTGTCTGGAGCTCTAGTTCCAGATGATGTGACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGCTCACAACTGTCTGGAGCTCTAGTTCCAGATGATGTGACACT  500

seq1  CAATACAAACATACAAGTGGGAAAAACACCAATGCACATAAAACAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAACATACAAGTGGGAAAAACACCAATGCACATAAAACAAAGGA  550

seq1  GAGAGAGAGGGAGAGAGAGAGGGGGGGGGGAGA  583
      |||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGGGAGAGAGAGAGGGGGGGGGGAGA  583