BAC Information

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BAC

Clone NameB6Ng01-119M11
Chromosome12 (Build37)
Map Location 118,050,451 - 118,218,033
singlet/doubletdoublet
Overlap genePtprn2
Upstream geneIgh, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119M11.bB6Ng01-119M11.g
ACCDH923901DH923902
length1,0701,149
definitionDH923901|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M11, 5' end.DH923902|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,216,951 - 118,218,033)(118,050,451 - 118,051,551)
sequence
gaattccacatcctgtcagctgagccttggtggctcagcatgtacccaga
tatgtagtcttttcaagcaagaggttaagagactcctgggcagcgttctg
aaaatgtccagaaattggtatagcttctggaaacaaacagtagccttttg
tgtgtttctaaagagtcagaagtccgatgccggacataatcagacagatc
tcaacaaaagtgaaccctgaatgaggggctagctacaggacaccaaccca
acccccatgtgagcctctgcaccttggatacctgtgtgtttcaggaaggt
ctcttcctcctaaatatagcaaggaggactctattgtcgattttcttcac
tgagaacagtgtagggaactgctggtttcaagccaaaagttttcacagtg
agcagctaactaatgtgccctgctgggcagcaagaacagagggcagaagt
ctagggcctgtgctcagagactcatctgcagggcttcaggctgggctgca
gcagtggcgaggctccctttgcatctgtgcccattcggcagatcgacatc
acaggggcatttttcatgggctgaagtactcaagcccagtcaccaggttg
catgtacacagtgtgtggtgagaggtctacacatcatgtggtctacacat
gcgcagaagacccaatgtgcatcctggctggtcattcctgcctgctgtat
caacctgcgcctctatttcaacttcggcagtgatgtgccagcaaaggagc
aaaagtaagtaatgtaagtacattagtgaggacaggcactgagaccatct
cttccctcccctgaggagattcatcagcggccaaagagtcaagccgacag
aagcagtcaagcttcagaaacattgttttcaatttctaataaaaaaaaaa
aatctgttttcccagaggatacatttttttttttagtatggtctatttct
ttgggctccaagccatgaatggattgatttgcctgactagttcttactga
gtgttaaaagatttgtttgatttcagtagctaaagggaccatgtaacctc
aaacctagctaagagctgaa
gaattctttgtttagctctgagcccccaatggaatagaattgaagactca
gaaatgaacccacacacctatggtcacttgatctttgacaagggagcaaa
aaccatccagtggaaaaaagacagcattttcaacaaatggtgctggcaca
actggcggttatcatgtagaagaattcgaattgatccattcctatctcct
tgtactaaggtcaaatctaagtggattaaggaactccacataaaaccaga
gacactgaaacttatagaggagaaagtagggaaaagcctcgaagatatgg
gtacagggggaaaattcctgaacagaacagcaatggcttgtgctgtaaga
tcgagaattgacaaatgggacctcatgaaactgcaaagcttctgtaaggc
aaaagacaccgtcaataagacaaaaaggccaccaacagattgggaaagga
tctttacctatcctaaatcagatatgggactaatatccaatacatataaa
gaactcaagaaggtggactccagaaaatcaaataactccattaaaaaatg
gaactcttctattgcttaacaatttccctatagctttctcatttcttaac
accttctaactgggatcttacttaattgtgaacatgtgtttaagctgttc
tgcaaatggtaaatcaggaactgtgtctgttctcacactgtaggtgactg
gtgcagaacacaagggtaggttttatatatgttatataaatgacatcaga
caataggcaacccttcgttggatacccgttctgcattcaccatgcgccgc
ttcctggaggttcatccaagttgtagttcatactaaccattctttcatca
tttctttatagttctctgtgaggtggatataccgctgagtgcttattaaa
ccttcactcacagtggccatctggggtatttctcaaatgggcttttattt
taaaacagcacttgtatactttgtgggtattatataaacagtattaaatg
tcatatacattaaacacacaatatgtacacacacacacccaccccctttc
cttttttggataatgtcagtgactatttgtggtccatagtagtacgtgct
caatttatattccacagaaaatttaaagcgatcaattttctgcatccgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118216951_118218033
seq2: B6Ng01-119M11.b_44_1112 (reverse)

seq1  TCAGCCTTCTTAGCTAGGTTGGAGGTTTACATGGTCCCTTTAGCTACTGG  50
      |||||  ||||||||||||| |||| |||||||||||||||||||||| |
seq2  TCAGC--TCTTAGCTAGGTTTGAGG-TTACATGGTCCCTTTAGCTACT-G  46

seq1  AAATCAAAACAAATTCTTTTTAACACTCAGTAAGAACTAGTCAGGCAAAT  100
      ||||| ||||||||   |||||||||||||||||||||||||||||||||
seq2  AAATC-AAACAAAT--CTTTTAACACTCAGTAAGAACTAGTCAGGCAAAT  93

seq1  CAATTCCAATTCATGGGCTTGGGAGCCCAAAGAAATTAGACCATACTTAA  150
      ||||  | |||||| ||||| |||||||||||||| |||||||||||  |
seq2  CAAT--CCATTCAT-GGCTT-GGAGCCCAAAGAAA-TAGACCATACT--A  136

seq1  AAAAAAAAAATGTATCCTCTGGGAAAACAGATTTTTTTTTTTTTATTAGA  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAAAAAAAATGTATCCTCTGGGAAAACAGA-TTTTTTTTTTTTATTAGA  185

seq1  AATTG-AAACAATGTTTCTGAAGCTTGACTGCTTCTGTCGGCTTGACTCT  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTGAAAACAATGTTTCTGAAGCTTGACTGCTTCTGTCGGCTTGACTC-  234

seq1  TTTGGCCGCTGATGAATCTCCTCAGGGGAGGGAAGAGATGGTCTCAGTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCGCTGATGAATCTCCTCAGGGGAGGGAAGAGATGGTCTCAGTGC  284

seq1  CTGTCCTCACTAATGTACTTACATTACTTAC-TTTGCTCCTTTGCTGGCA  348
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTCCTCACTAATGTACTTACATTACTTACTTTTGCTCCTTTGCTGGCA  334

seq1  CATCACTGCCGAAGTTGAAATAGAGGCGCAGGTTGATACAGCAGGCAGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGCCGAAGTTGAAATAGAGGCGCAGGTTGATACAGCAGGCAGGA  384

seq1  ATGACCAGCCAGGATGCACATTGGGTCTTCTGCGCATGTGTAGACCACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGCCAGGATGCACATTGGGTCTTCTGCGCATGTGTAGACCACAT  434

seq1  GATGTGTAGACCTCTCACCACACACTGTGTACATGCAACCTGGTGACTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTAGACCTCTCACCACACACTGTGTACATGCAACCTGGTGACTGG  484

seq1  GCTTGAGTACTTCAGCCCATGAAAAATGCCCCTGTGATGTCGATCTGCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTACTTCAGCCCATGAAAAATGCCCCTGTGATGTCGATCTGCCG  534

seq1  AATGGGCACAGATGCAAAGGGAGCCTCGCCACTGCTGCAGCCCAGCCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCACAGATGCAAAGGGAGCCTCGCCACTGCTGCAGCCCAGCCTGA  584

seq1  AGCCCTGCAGATGAGTCTCTGAGCACAGGCCCTAGACTTCTGCCCTCTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCAGATGAGTCTCTGAGCACAGGCCCTAGACTTCTGCCCTCTGT  634

seq1  TCTTGCTGCCCAGCAGGGCACATTAGTTAGCTGCTCACTGTGAAAACTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGCCCAGCAGGGCACATTAGTTAGCTGCTCACTGTGAAAACTTT  684

seq1  TGGCTTGAAACCAGCAGTTCCCTACACTGTTCTCAGTGAAGAAAATCGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGAAACCAGCAGTTCCCTACACTGTTCTCAGTGAAGAAAATCGAC  734

seq1  AATAGAGTCCTCCTTGCTATATTTAGGAGGAAGAGACCTTCCTGAAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTCCTCCTTGCTATATTTAGGAGGAAGAGACCTTCCTGAAACAC  784

seq1  ACAGGTATCCAAGGTGCAGAGGCTCACATGGGGGTTGGGTTGGTGTCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTATCCAAGGTGCAGAGGCTCACATGGGGGTTGGGTTGGTGTCCTG  834

seq1  TAGCTAGCCCCTCATTCAGGGTTCACTTTTGTTGAGATCTGTCTGATTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGCCCCTCATTCAGGGTTCACTTTTGTTGAGATCTGTCTGATTAT  884

seq1  GTCCGGCATCGGACTTCTGACTCTTTAGAAACACACAAAAGGCTACTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGCATCGGACTTCTGACTCTTTAGAAACACACAAAAGGCTACTGTT  934

seq1  TGTTTCCAGAAGCTATACCAATTTCTGGACATTTTCAGAACGCTGCCCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAGAAGCTATACCAATTTCTGGACATTTTCAGAACGCTGCCCAG  984

seq1  GAGTCTCTTAACCTCTTGCTTGAAAAGACTACATATCTGGGTACATGCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTTAACCTCTTGCTTGAAAAGACTACATATCTGGGTACATGCTG  1034

seq1  AGCCACCAAGGCTCAGCTGACAGGATGTGGAATTC  1083
      |||||||||||||||||||||||||||||||||||
seq2  AGCCACCAAGGCTCAGCTGACAGGATGTGGAATTC  1069

seq1: chr12_118050451_118051551
seq2: B6Ng01-119M11.g_130_1218

seq1  CACACACCTATGGTCACTTGATCTTTGACAAGGGAGCAAAAACCATCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTATGGTCACTTGATCTTTGACAAGGGAGCAAAAACCATCCAG  50

seq1  TGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTT  100

seq1  ATCATGTAGAAGAATTCGAATTGATCCATTCCTATCTCCTTGTACTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTAGAAGAATTCGAATTGATCCATTCCTATCTCCTTGTACTAAGG  150

seq1  TCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAA  200

seq1  CTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGG  250

seq1  AAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTG  300

seq1  ACAAATGGGACCTCATGAAACTGCAAAGCTTCTGTAAGGCAAAAGACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGGACCTCATGAAACTGCAAAGCTTCTGTAAGGCAAAAGACACC  350

seq1  GTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTA  400

seq1  TCCTAAATCAGATATGGGACTAATATCCAATACATATAAAGAACTCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATCAGATATGGGACTAATATCCAATACATATAAAGAACTCAAGA  450

seq1  AGGTGGACTCCAGAAAATCAAATAACTCCATTAAAAAATGGAACTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACTCCAGAAAATCAAATAACTCCATTAAAAAATGGAACTCTTCT  500

seq1  ATTGCTTAACAATTTCCCTATAGCTTTCTCATTTCTTAACACCTTCTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAACAATTTCCCTATAGCTTTCTCATTTCTTAACACCTTCTAAC  550

seq1  TGGGATCTTACTTAATTGTGAACATGTGTTTAAGCTGTTCTGCAAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTTACTTAATTGTGAACATGTGTTTAAGCTGTTCTGCAAATGGT  600

seq1  AAATCAGGAACTGTGTCTGTTCTCACACTGTAGGTGACTGGTGCAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGAACTGTGTCTGTTCTCACACTGTAGGTGACTGGTGCAGAACA  650

seq1  CAAGGGTAGGTTTTATATATGTTATATAAATGACATCAGACAATAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTAGGTTTTATATATGTTATATAAATGACATCAGACAATAGGCAA  700

seq1  -CCTTCGTTGGATA-CCGTTCTGCATTCACCATGCGCCGCTTCCTGGAGG  748
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCTTCGTTGGATACCCGTTCTGCATTCACCATGCGCCGCTTCCTGGAGG  750

seq1  TTCATCCAAGTTGTAGTTCATACTAACCATTCTTTCATCATTTCTTTATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAAGTTGTAGTTCATACTAACCATTCTTTCATCATTTCTTTATA  800

seq1  GTTCTCTGTGAGGTGGATATACCGCTGAGTGCTTATTAAACCTTCACTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGTGAGGTGGATATACCGCTGAGTGCTTATTAAACCTTCACTCA  850

seq1  CCAGTGGCCATCTGGGGTATTTCTCAAATGGGCTTTTATTAT-AAACAGC  897
       ||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  -CAGTGGCCATCTGGGGTATTTCTCAAATGGGCTTTTATTTTAAAACAGC  899

seq1  ACTTGTATACTTTGTGGGCTATTATTATAAACAGTATTAAATGTTCATAT  947
      |||||||||||||||||| ||||| |||||||||||||||||| ||||||
seq2  ACTTGTATACTTTGTGGG-TATTA-TATAAACAGTATTAAATG-TCATAT  946

seq1  ACA-TAAACACACACATATGTACACACACACACCCACACACTTTCCTTTT  996
      ||| |||||||||| |||||||||||||||||||||| | ||||||||||
seq2  ACATTAAACACACA-ATATGTACACACACACACCCACCCCCTTTCCTTTT  995

seq1  TTTGGGATAAAGGACAGTGACTATGTTGTTGGGTCACATAGTAAGTACGT  1046
      ||  |||| || | |||||||||| ||||  |||| |||||| |||||||
seq2  TT--GGAT-AATGTCAGTGACTAT-TTGT--GGTC-CATAGT-AGTACGT  1037

seq1  GCTCATTTTATATTCCCACCAGAAAA-TTAAAGCGATCCAATTTTTCTGC  1095
      ||||| ||||||||||   ||||||| |||||||||||  | ||||||||
seq2  GCTCAATTTATATTCC--ACAGAAAATTTAAAGCGATC--AATTTTCTGC  1083

seq1  ATCCGT  1101
      ||||||
seq2  ATCCGT  1089