BAC Information

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BAC

Clone NameB6Ng01-119M22
Chromosome12 (Build37)6 (Build37)
Map Location 77,284,466 - 77,284,73419,622,373 - 19,623,518
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957
Downstream geneTex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119M22.bB6Ng01-119M22.g
ACCDH923922DH923923
length9081,124
definitionDH923922|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M22, 5' end.DH923923|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,284,466 - 77,284,734)(19,622,373 - 19,623,518)
sequence
gaattctcctttctttctttctttctttctttcattctttctttctttct
ttctttctttctttctttctttctttcttccttccttccttccttccttc
cttccttccttcctttctttctttctttctttctttctttctttctttct
tttatctttatttttctgcccagttgttatctccctcctgttctgctttt
tgactgttcctcattccataccttcttgcccatctccaagatgtcagcac
acccacaccctaatccctccagatctccccacttcctggggattcaagcc
tctaaatggttaagtgcatcttctctaaatgggtccagttctggcagtcc
tctgctgtgtatgtgttaagggccttatatgaactggtttatgctgtctg
tttggtggctcagtgtctgagaaatctcaggagtccaggttagttgagac
tgctggtctacctatagggtcaccctcctcagattcttccagcttttttc
caattcaaccataggggcccctgatttctgtcccttggttgggtgtaagc
atctgcatctgactctttcagctgcttgttgggtctttggagagcagtca
tgcttgtgttttctttattgcttctatttgcatttttgggccttgaacgg
ttttatttgttttcttcaactgtttggtttcattttggcatctttagggg
atttatgcatttcctccaattgtttgtttgtgttttcttggatttccttg
agatttattttcttgttaaggagctttatcatcttcatatagttagtttt
aaggctgatttttgtttgtcaactgtgttggaatattcagggccgcctag
ggtgagatagctggaatatggtggatctatattgcactggctgttatcga
ttcatttc
gaattcaactcagaacatctagaagactagcaaatgtttttaactactaa
gttatctctgcagcccaagggaacagaatttagacatctaaaggtattaa
aacaaaagcatgtgtccataagtctatgagatgttcataaaatactaaac
tgttattcatgtaaacaaagatttgacgaaattgtttatcacctggcttt
cacagatgaagagacaaaactgtacaataatgacaaattatctcaaaatt
accttgaaattcaatgcaatctaattaaaaccacctgaaataatctcttt
tttcagtttttattagatattttcttcatttacatttcaaatgctatcct
gaaagtcccttataccctctcccgccctactaccctacccacccactccc
acatcttggtcctggcattccacttaaagatgcttctgaaatttgtgcat
atattaacttaataaaatatttctctctttttcttgaaaaaaaataaaag
gtaagttttagcttagcacatagaaagaataaccatcagagtagggagat
ttttaaagtgttggtacttaatattttatttttaacttattcattttctg
ttatataattatgtagcatttgtttcatgtgtatcaattagtcagtattt
ttcaatatcctaaacctcatctttacaataaatatactttgattcatgta
aacaaagatttgaacaaatggtttagcacattgctttcattttttattat
tacatattttattattagctcttatattaaatctataatagagccttacc
ttgaaacaacaatttgtctgtctccctgtgtctttattaccagagctgct
gaatgtatttgggagaaaaataaacagaatgtaaatttcaatacccaagg
agtaatcattaacattgaccctacagataataaagcattatgactcaatg
aggtattctctatttctacctcattcctcatcctatctctcatctactga
tagcataaatcttccctatacttcttagggaagaaataaaaccctcagat
ataatcatatcagtattttcacatacatttctcaaaattctactatgata
tccactacattagaggttcatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77284466_77284734
seq2: B6Ng01-119M22.b_50_189 (reverse)

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||| ||| ||| ||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAA  50

seq1  GAAAGAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC  100
      | |||            || ||          |||               
seq2  GGAAG------------GAAGG----------AAG---------------  63

seq1  TTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  150
           ||||   |||                                   
seq2  ----GAAGG--AAGA-----------------------------------  72

seq1  CATCCGTAACAAGACCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTA  200
                ||||                          |||| ||  |
seq2  ----------AAGA--------------------------AAGAAAG--A  84

seq1  CAGTGTACTTACATATAATGAATAAATAAATCTTTAAAAAAAAAAGAAGA  250
       ||       | | | ||  || ||| |||     || ||  |||||  |
seq2  AAG-------AAAGA-AAGAAAGAAAGAAA---GAAAGAATGAAAGA--A  121

seq1  AGAAAGAAAGAAAGAAAGG  269
      |||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGG  140

seq1: chr6_19622373_19623518
seq2: B6Ng01-119M22.g_68_1191 (reverse)

seq1  GCCATGAAACTCTTATATGTAGTGGGATTATA-CATAGTAGAATTTTTTG  49
      |||||||| ||||   |||||||||    ||| ||||||||||  |||||
seq2  GCCATGAACCTCT--AATGTAGTGG----ATATCATAGTAGAA--TTTTG  42

seq1  AGAAATGGTTATGGTTGGAAAATACTGATATGGTTTATATCTGAGGGTTT  99
      |||||||  ||||    |||||||||||||| | ||||||||||||||||
seq2  AGAAATG--TATG---TGAAAATACTGATAT-GATTATATCTGAGGGTTT  86

seq1  TATTTCTTTCCCTAAGGAGTAATAAGGGAAGATTTATGCTATCAGTAGAT  149
      |||||| ||||||||| ||||   ||||||||||||||||||||||||||
seq2  TATTTC-TTCCCTAAGAAGTA--TAGGGAAGATTTATGCTATCAGTAGAT  133

seq1  GAAGAGATAGGAATGAGGAATGAGGTAAGAAATAGAGAATAACCTCATTT  199
      | ||||||||| |||||||||||||| ||||||||||||| |||||| ||
seq2  G-AGAGATAGG-ATGAGGAATGAGGT-AGAAATAGAGAAT-ACCTCA-TT  178

seq1  GAGTCATAATGCCTTTATTATCTGTAGGGTCAATGTTAATGATTACTCCT  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATAATG-CTTTATTATCTGTAGGGTCAATGTTAATGATTACTCCT  227

seq1  TGGGTATTGAAATTTACATTCTGTTTATTTTTCT-CCAAATACATTCAGC  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGGTATTGAAATTTACATTCTGTTTATTTTTCTCCCAAATACATTCAGC  277

seq1  AGCTCTGGTAATTAAAGACACAGGGAGACAGACAAATTGTTGTTTCAAGG  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGTAA-TAAAGACACAGGGAGACAGACAAATTGTTGTTTCAAGG  326

seq1  TAAGGCTCTATTATAGATTTAATATAAGAGCTAATAATAAAATATGTAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTCTATTATAGATTTAATATAAGAGCTAATAATAAAATATGTAAT  376

seq1  AATAAAAAATGAAAGCAATGTGCTAAACCATTTGTTCAAATCTTTGTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATGAAAGCAATGTGCTAAACCATTTGTTCAAATCTTTGTTTA  426

seq1  CATGAATCAAAGTATATTTATTGTAAAGATGAGGTTTAGGATATTGAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATCAAAGTATATTTATTGTAAAGATGAGGTTTAGGATATTGAAAA  476

seq1  ATACTGACTAATTGATACACATGAAACAAATGCTACATAATTATATAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTAATTGATACACATGAAACAAATGCTACATAATTATATAACA  526

seq1  GAAAATGAATAAGTTAAAAATAAAATATTAAGTACCAACACTTTAAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAATAAGTTAAAAATAAAATATTAAGTACCAACACTTTAAAAAT  576

seq1  CTCCCTACTCTGATGGTTATTCTTTCTATGTGCTAAGCTAAAACTTACCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTACTCTGATGGTTATTCTTTCTATGTGCTAAGCTAAAACTTACCT  626

seq1  TTTATTTTTTTTCAAGAAAAAGAGAGAAATATTTTATTAAGTTAATATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTTCAAGAAAAAGAGAGAAATATTTTATTAAGTTAATATAT  676

seq1  GCACAAATTTCAGAAGCATCTTTAAGTGGAATGCCAGGACCAAGATGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAATTTCAGAAGCATCTTTAAGTGGAATGCCAGGACCAAGATGTGG  726

seq1  GAGTGGGTGGGTAGGGTAGTAGGGCGGGAGAGGGTATAAGGGACTTTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTGGGTAGGGTAGTAGGGCGGGAGAGGGTATAAGGGACTTTCAG  776

seq1  GATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAACTGAAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAACTGAAAAA  826

seq1  AGAGATTATTTCAGGTGGTTTTAATTAGATTGCATTGAATTTCAAGGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTATTTCAGGTGGTTTTAATTAGATTGCATTGAATTTCAAGGTAA  876

seq1  TTTTGAGATAATTTGTCATTATTGTACAGTTTTGTCTCTTCATCTGTGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATAATTTGTCATTATTGTACAGTTTTGTCTCTTCATCTGTGAA  926

seq1  AGCCAGGTGATAAACAATTTCGTCAAATCTTTGTTTACATGAATAACAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTGATAAACAATTTCGTCAAATCTTTGTTTACATGAATAACAGT  976

seq1  TTAGTATTTTATGAACATCTCATAGACTTATGGACACATGCTTTTGTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTTTATGAACATCTCATAGACTTATGGACACATGCTTTTGTTTT  1026

seq1  AATACCTTTAGATGTCTAAATTCTGTTCCCTTGGGCTGCAGAGATAACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTTAGATGTCTAAATTCTGTTCCCTTGGGCTGCAGAGATAACTT  1076

seq1  AGTAGTTAAAAACATTTGCTAGTCTTCTAGATGTTCTGAGTTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTAAAAACATTTGCTAGTCTTCTAGATGTTCTGAGTTGAATTC  1124