BAC Information

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BAC

Clone NameB6Ng01-119N19
Chromosome12 (Build37)
Map Location 86,403,159 - 86,527,542
singlet/doubletdoublet
Overlap geneYlpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf
Upstream geneAcot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1
Downstream geneEif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119N19.bB6Ng01-119N19.g
ACCDH923960DH923961
length5031,093
definitionDH923960|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N19, 5' end.DH923961|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,527,034 - 86,527,542)(86,403,159 - 86,404,261)
sequence
ctcaggttcctgatgagacgaggaagtgactggaatgtgaggtgtcatct
gcagggtgcgagtcatcatttgggggaaacactctctgagacattcttta
cgtgagtccaaggctgaatggtagaggagtatcccagatgtccacctcca
aaccaacgtggcttcctggccattcctcattacaccagagaggggtccag
agctgtccccaggggcctcctgggctgcagactccaggccccactctttg
agatgaggaaggctgaaggcagaaaggatcttagaaggagcagccaagtg
ttccttgattcagaagagtctggggcctgaggagccagctggaggtccac
tgtctgtctgctgaagactctgctagactttttggctcctctacccctgg
gaatccaagcataaggaactaatctggctctcctttgcacctagtgccta
cactagctgccttcctttgctctccgggtggagatgagggctggggaggg
agg
gaattctcttctaactcatgaggatcatctgagaattagtgtatttgtgt
tgcctttcgtatcacattgactgtttggctaccaggtagagattgcttcc
ctgagtactctgccagcgttcgtacatttcttttagcaatgtgattttgc
taaggtgggaacacacttgagctttacctgtgtggcatattgagctgaga
gagctgaaacttggagctgaagagttctgatcataggcgagtcttcagta
agaaatacttctgtactcttccaagcagattgtcagaattctttgcagaa
tcttgacttgtgcttaatatacaggtcagctcgtgtctgttaaattggaa
gcagcatcaatccaaacagtttcagaagtggcctgagctgtatctaccat
ggtattacagtgtgactggcagctacctgaccagtgttagttacacctga
ctgctctgtcctaactgggagatagacatagtaatgtacaagttgggttt
tacacatacccgctgggctttagttgtgaagctacttcagttgcagtgat
gtgaggctagtttctcacacctgtaagacctagagtattggagactgcta
ccatcataacggtctctccagagaaagtgttctgctcttgccatcacttc
tactcaccagacagacggaatcatcctttcacagttgagatgtaattgtc
atttatgtagacacataactcttgtatgttcacttggaaaatttttcaag
taccatttacatttagaaaataatagatgtatctatggaatttttctgtt
gtgctatagtaatatgcagcattttaaagatgtagtaattctgtgactga
ccaagttgggatcaaaaatttcatctctaaaacttcatcttttgcgaccc
aggcctctaatgtgtgaattgattggacaccagtctttcttctgtaacaa
caccagatgctcttcccttacttatacatctgagtgttgggacctctggt
attgttggacgaggtgttcatcctttcttccacactcaaagtgaaacttg
aacatgaatgcacaattaaatctcaataaaggtgctctgacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86527034_86527542
seq2: B6Ng01-119N19.b_49_557 (reverse)

seq1  CCTCCCTCCCCAGCCCTCATCTCCACCCGGAGAGCAAAGGAAGGCAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCCAGCCCTCATCTCCACCCGGAGAGCAAAGGAAGGCAGCTA  50

seq1  GTGTAGGCACTAGGTGCAAAGGAGAGCCAGATTAGTTCCTTATGCTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGCACTAGGTGCAAAGGAGAGCCAGATTAGTTCCTTATGCTTGGA  100

seq1  TTCCCAGGGGTAGAGGAGCCAAAAAGTCTAGCAGAGTCTTCAGCAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGGGTAGAGGAGCCAAAAAGTCTAGCAGAGTCTTCAGCAGACAG  150

seq1  ACAGTGGACCTCCAGCTGGCTCCTCAGGCCCCAGACTCTTCTGAATCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGACCTCCAGCTGGCTCCTCAGGCCCCAGACTCTTCTGAATCAAG  200

seq1  GAACACTTGGCTGCTCCTTCTAAGATCCTTTCTGCCTTCAGCCTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGGCTGCTCCTTCTAAGATCCTTTCTGCCTTCAGCCTTCCTCA  250

seq1  TCTCAAAGAGTGGGGCCTGGAGTCTGCAGCCCAGGAGGCCCCTGGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGAGTGGGGCCTGGAGTCTGCAGCCCAGGAGGCCCCTGGGGACA  300

seq1  GCTCTGGACCCCTCTCTGGTGTAATGAGGAATGGCCAGGAAGCCACGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGACCCCTCTCTGGTGTAATGAGGAATGGCCAGGAAGCCACGTTG  350

seq1  GTTTGGAGGTGGACATCTGGGATACTCCTCTACCATTCAGCCTTGGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGGTGGACATCTGGGATACTCCTCTACCATTCAGCCTTGGACTC  400

seq1  ACGTAAAGAATGTCTCAGAGAGTGTTTCCCCCAAATGATGACTCGCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAAGAATGTCTCAGAGAGTGTTTCCCCCAAATGATGACTCGCACCC  450

seq1  TGCAGATGACACCTCACATTCCAGTCACTTCCTCGTCTCATCAGGAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGACACCTCACATTCCAGTCACTTCCTCGTCTCATCAGGAACCT  500

seq1  GAGGAATTC  509
      |||||||||
seq2  GAGGAATTC  509

seq1: chr12_86403159_86404261
seq2: B6Ng01-119N19.g_71_1163

seq1  GAATTCTCTTCTAACTCATGAGGATCATCTGAGAATTAGTGTATTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTAACTCATGAGGATCATCTGAGAATTAGTGTATTTGTGT  50

seq1  TGCCTTTCGTATCACATTGACTGTTTGGCTACCAGGTAGAGATTGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCGTATCACATTGACTGTTTGGCTACCAGGTAGAGATTGCTTCC  100

seq1  CTGAGTACTCTGCCAGCGTTCGTACATTTCTTTTAGCAATGTGATTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTACTCTGCCAGCGTTCGTACATTTCTTTTAGCAATGTGATTTTGC  150

seq1  TAAGGTGGGAACACACTTGAGCTTTACCTGTGTGGCATATTGAGCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGGAACACACTTGAGCTTTACCTGTGTGGCATATTGAGCTGAGA  200

seq1  GAGCTGAAACTTGGAGCTGAAGAGTTCTGATCATAGGCGAGTCTTCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAAACTTGGAGCTGAAGAGTTCTGATCATAGGCGAGTCTTCAGTA  250

seq1  AGAAATACTTCTGTACTCTTCCAAGCAGATTGTCAGAATTCTTTGCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACTTCTGTACTCTTCCAAGCAGATTGTCAGAATTCTTTGCAGAA  300

seq1  TCTTGACTTGTGCTTAATATACAGGTCAGCTCGTGTCTGTTAAATTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTTGTGCTTAATATACAGGTCAGCTCGTGTCTGTTAAATTGGAA  350

seq1  GCAGCATCAATCCAAACAGTTTCAGAAGTGGCCTGAGCTGTATCTACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCAATCCAAACAGTTTCAGAAGTGGCCTGAGCTGTATCTACCAT  400

seq1  GGTATTACAGTGTGACTGGCAGCTACCTGACCAGTGTTAGTTACACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTACAGTGTGACTGGCAGCTACCTGACCAGTGTTAGTTACACCTGA  450

seq1  CTGCTCTGTCCTAACTGGGAGATAGACATAGTAATGTACAAGTTGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTCCTAACTGGGAGATAGACATAGTAATGTACAAGTTGGGTTT  500

seq1  TACACATACCCGCTGGGCTTTAGTTGTGAAGCTACTTCAGTTGCAGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACCCGCTGGGCTTTAGTTGTGAAGCTACTTCAGTTGCAGTGAT  550

seq1  GTGAGGCTAGTTTCTCACACCTGTAAGACCTAGAGTATTGGAGACTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTAGTTTCTCACACCTGTAAGACCTAGAGTATTGGAGACTGCTA  600

seq1  CCATCATAACGGTCTCTCCAGAGAAAGTGTTCTGCTCTTGCCATCACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATAACGGTCTCTCCAGAGAAAGTGTTCTGCTCTTGCCATCACTTC  650

seq1  TACTCACCAGACAGACGGAATCATCCTTTCACAGTTGAGATGTAATTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACCAGACAGACGGAATCATCCTTTCACAGTTGAGATGTAATTGTC  700

seq1  ATTTATGTAGACACATAACTCTTGTATGTTCACTTGGAAAATTTTTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTAGACACATAACTCTTGTATGTTCACTTGGAAAATTTTTCAAG  750

seq1  TACCATTTACATTTAGAAAATAATAGATGTATCTATGGAATTTTTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTACATTTAGAAAATAATAGATGTATCTATGGAATTTTTCTGTT  800

seq1  GTGCTATAGTAATATGCAGCATTTTAAAGATGTAGTAAATTCTGTGACTG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGCTATAGTAATATGCAGCATTTTAAAGATGTAGT-AATTCTGTGACTG  849

seq1  ACCAAGTT-GGATCAAAAATTTCATCCTCTTAAAACTTCATCTTTTGCGA  899
      |||||||| |||||||||||||||| ||| ||||||||||||||||||||
seq2  ACCAAGTTGGGATCAAAAATTTCAT-CTC-TAAAACTTCATCTTTTGCGA  897

seq1  CCCAGGCCTCTAATGTGTGAATGGATTGGACACCAGTCTTTCTTCTGTAA  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCAGGCCTCTAATGTGTGAATTGATTGGACACCAGTCTTTCTTCTGTAA  947

seq1  CCAACACCCAGATGCCTCTTCCCTTACTTTATACCATCTGAGTGTTTGGG  999
       ||||| ||||||| |||||||||||| ||||| |||||||||||| || 
seq2  -CAACA-CCAGATG-CTCTTCCCTTAC-TTATA-CATCTGAGTGTTGGGA  992

seq1  ACTCTGGTATTTGTTGGACGAGGTGTTCATCCTTTCTTCCACACTCAAAG  1049
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTA-TTGTTGGACGAGGTGTTCATCCTTTCTTCCACACTCAAAG  1041

seq1  TGAAACTTGAAACATGAATGCACAATATAATCTCAAATCAAGGTGCTCTG  1099
      ||||||||| ||||||||||||||||  |||||| ||| |||||||||||
seq2  TGAAACTTG-AACATGAATGCACAATTAAATCTC-AATAAAGGTGCTCTG  1089

seq1  ACTA  1103
      ||||
seq2  ACTA  1093