BAC Information

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BAC

Clone NameB6Ng01-120I21
Chromosome12 (Build37)
Map Location 116,065,906 - 116,235,625
singlet/doubletdoublet
Overlap geneIgh, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47
Upstream geneIghv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30
Downstream geneIghv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120I21.bB6Ng01-120I21.g
ACCDH924469DH924470
length1,1681,085
definitionDH924469|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I21, 5' end.DH924470|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,065,906 - 116,067,080)(116,234,516 - 116,235,625)
sequence
gaattcatatggtctgtgaattgtatcttggatattctgaacttttaagc
taatatccacttattagtgagtacatatcatgtgtgtgattttgtgattg
ggttacctcactcagggtgatgtgctcaaattccatccatttgcctacaa
atttcatgaagtccttgtttttaaaagatgagtaatactccaatccataa
atgtaccttattttctgtatgcattccaatcttgagggatatttggattg
tttccagcttctaccttttctgaatatgttgtctatgaatgtgccaccct
aataatcaaatgcttgaatgagcctaagggggtcaaggagtcaatgtgat
ggtttgtatatgttcagcccagaatagcactattttaaggcaagttcatg
ttggaaaagtctgtcacactgggtgtgggcaataaaattctcggcttctt
ggaagccagtatctgctagtatcattcatatgaagatgtagaactcacag
ctctgcttgctccatgcctgtctggatgctgtcatgctttcctaccttaa
tgatacttgacataacctctacacctgaaagtcagcacccattaaatatt
ttccttcataaacttgccttggacatggcctctgttcatagcagtaaaac
gtaaaaaagacatatgatatatatgaatagtaaattcagaatgcagtaat
atgtactggacagcattcgtttttaaattttgtccagtcttcttttccct
ctctcctataacactcactcaacactcagaggaatgtttgacttgaaaat
ggcagaaatgatacacgtctgcatcctgatattaataccaatgtattcta
agagcttgggaacttctgacacaccaaataggcaagtaagcaaagcacat
aaaactcatttaagactcaagactctgtcctttctactctgttggataat
atgtgttgcctgtggccttggtcctgatgagatgcttcaaagccttataa
aaagtctggctcccatcaacccctactataccctaagttaaaggaaattt
gtctttcaggaagtaaataaccctttcattataaattcagaagtcttgaa
tagagtaaagactttactattcctggaactcctaagaggctattctttgc
ttcgaaccttggttgaat
gaattcacacatggatgcacgtggagctgcatctgagctccagactcatc
attgtcattctgtcctcagatgctctggcccaggtacagtctggtgactg
caacaaagaccctgatctcacttgtttgcaccttattacaaataagaact
cttagaactggatccaactgccgctatgcaagcagataactttgaaagca
tcattgatgataatgaagaaacaacttaaattcagatgctgagacatgag
ttatcatttccctttaaacaagatccttttcacactacatctgagcccac
caagcacattagttgcatggatatgttactgctcaactaagacttaagtg
taaaggatgggaaatctacctacaggtgagttcttgaccagcagggggca
tattagggccaagaatacccatcagagagatgtggtccatgagtggggga
ctctgtatcctctgaggtttccttttttaacttaagtgtacctattgtga
ttggcatgtaacatttccatgctcaaacactgtggagactctgtgttaaa
tagttcaaagatttatattttctttttttaaatttaatgttatataaaat
cagacctctgagatctctcagatgctaggtcacattctaggcatacatac
acaagttcttcggaggaacctggacacatatatgacagagaactgcctgc
tctggcctcagtgggtaagaagcacctaatcttctagatatttgtagtcc
ctgggtggggaggcctgggagatatgggtgtatcctcttgagacagggat
cagaaagaatagcatgaggaactgtgggaggtggacttggagggggcaaa
aaataaaagtaatcaaaataaatattaaatgtatacaatgtgttttgatc
cctgatattctttccaaacttataccagaacatcaccactcacccaacta
cccacgttcatttctttatagatgaaaaatacatgaaaggggttaaatcc
aaaaagattaacaccacacacaaactcttaaaaatgcacctgtgacccag
attaattcaaagacagtctgctaattaatgccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116065906_116067080
seq2: B6Ng01-120I21.b_47_1214

seq1  GAATTCATATGGTCTGTGAATTGTATCTTGGATATTCTGAACTTTTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGGTCTGTGAATTGTATCTTGGATATTCTGAACTTTTAAGC  50

seq1  TAATATCCACTTATTAGTGAGTACATATCATGTGTGTGATTTTGTGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCACTTATTAGTGAGTACATATCATGTGTGTGATTTTGTGATTG  100

seq1  GGTTACCTCACTCAGGGTGATGTGCTCAAATTCCATCCATTTGCCTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTCACTCAGGGTGATGTGCTCAAATTCCATCCATTTGCCTACAA  150

seq1  ATTTCATGAAGTCCTTGTTTTTAAAAGATGAGTAATACTCCAATCCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGAAGTCCTTGTTTTTAAAAGATGAGTAATACTCCAATCCATAA  200

seq1  ATGTACCTTATTTTCTGTATGCATTCCAATCTTGAGGGATATTTGGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTTATTTTCTGTATGCATTCCAATCTTGAGGGATATTTGGATTG  250

seq1  TTTCCAGCTTCTACCTTTTCTGAATATGTTGTCTATGAATGTGCCACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTTCTACCTTTTCTGAATATGTTGTCTATGAATGTGCCACCCT  300

seq1  AATAATCAAATGCTTGAATGAGCCTAAGGGGGTCAAGGAGTCAATGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAAATGCTTGAATGAGCCTAAGGGGGTCAAGGAGTCAATGTGAT  350

seq1  GGTTTGTATATGTTCAGCCCAGAATAGCACTATTTTAAGGCAAGTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTATATGTTCAGCCCAGAATAGCACTATTTTAAGGCAAGTTCATG  400

seq1  TTGGAAAAGTCTGTCACACTGGGTGTGGGCAATAAAATTCTCGGCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGTCTGTCACACTGGGTGTGGGCAATAAAATTCTCGGCTTCTT  450

seq1  GGAAGCCAGTATCTGCTAGTATCATTCATATGAAGATGTAGAACTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGTATCTGCTAGTATCATTCATATGAAGATGTAGAACTCACAG  500

seq1  CTCTGCTTGCTCCATGCCTGTCTGGATGCTGTCATGCTTTCCTACCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTGCTCCATGCCTGTCTGGATGCTGTCATGCTTTCCTACCTTAA  550

seq1  TGATACTTGACATAACCTCTACACCTGAAAGTCAGCACCCATTAAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTGACATAACCTCTACACCTGAAAGTCAGCACCCATTAAATATT  600

seq1  TTCCTTCATAAACTTGCCTTGGACATGGCCTCTGTTCATAGCAGTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATAAACTTGCCTTGGACATGGCCTCTGTTCATAGCAGTAAAAC  650

seq1  GTAAAAAAGACATATGATATATATGAATAGTAAATTCAGAATGCAGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAGACATATGATATATATGAATAGTAAATTCAGAATGCAGTAAT  700

seq1  ATGTACTGGACAGCATTCGTTTTTAAATTTTGTCCAGTCTTCTTTTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGGACAGCATTCGTTTTTAAATTTTGTCCAGTCTTCTTTTCCCT  750

seq1  CTCTCCTATAACACTCACTCAACACTCAGAGGAATGTTTGACTTGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTATAACACTCACTCAACACTCAGAGGAATGTTTGACTTGAAAAT  800

seq1  GGCAGAAATGATACACGTCTGCATCCTGATATTAATACCAATGTATTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAATGATACACGTCTGCATCCTGATATTAATACCAATGTATTCTA  850

seq1  AGAGCTT-GGAACTTCTGACACACCAAATAGGCAAGTAAGCAAAGCACAT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGGGAACTTCTGACACACCAAATAGGCAAGTAAGCAAAGCACAT  900

seq1  AAAACTCATTTAAGACTCAAGACTCTGTCCTTTTCTACTCTGTTGGATAA  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAACTCATTTAAGACTCAAGACTCTGTCC-TTTCTACTCTGTTGGATAA  949

seq1  TATTGTGTTGCCTGTGGCCTTGGTCCTGATGAGATGCTTCAAAGCCTTAT  999
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TA-TGTGTTGCCTGTGGCCTTGGTCCTGATGAGATGCTTCAAAGCCTTA-  997

seq1  TAAAAAGTCTGGCTCCACATCAACCCCTACTATA-CCTAAGTTTACAAGG  1048
      |||||||||||||||| ||||||||||||||||| ||||||||   ||||
seq2  TAAAAAGTCTGGCTCC-CATCAACCCCTACTATACCCTAAGTT--AAAGG  1044

seq1  AAATTTGTCTTTCAGGAAGGTAAATTACCCTTTTCATTTATAAAATCAGG  1098
      |||||||||||||||||| |||||| |||| ||||| ||||||| |||| 
seq2  AAATTTGTCTTTCAGGAA-GTAAATAACCC-TTTCA-TTATAAATTCAGA  1091

seq1  AGTTCTGAATAGGAAGTAAAGACTTACCTATT-CTGG-ACTCTAAAGAGG  1146
      |||  |||||||  |||||||||||  ||||| |||| ||||  ||||||
seq2  AGTCTTGAATAG--AGTAAAGACTTTACTATTCCTGGAACTCCTAAGAGG  1139

seq1  CTTATTCTTTGCTCAGAA-CTTGGTTGAAT  1175
      | |||||||||||  ||| |||||||||||
seq2  C-TATTCTTTGCTTCGAACCTTGGTTGAAT  1168

seq1: chr12_116234516_116235625
seq2: B6Ng01-120I21.g_67_1151 (reverse)

seq1  TTTGTGCATTAATTTTGCTGTACTTGTCTTTTGGATATATCTTGGTCACA  50
      |||| ||||||| || || | || |||| |||| ||  |||| |||||| 
seq2  TTTG-GCATTAA-TTAGCAG-AC-TGTC-TTTGAATTAATCTGGGTCAC-  44

seq1  GAGTTGCATTTTTATGAGTTTGTGTGTGTGTGTGTTTATTCTTTTTTGAT  100
       || |||||||||| |||||||||||||   ||| ||| ||||||| || 
seq2  -AGGTGCATTTTTAAGAGTTTGTGTGTG---GTG-TTAATCTTTTTGGA-  88

seq1  TTTTTAACCCCTTTTCATGTAATTTTTCATTCTATAGAAGAAATGAAACG  150
        ||||||||| |||||||| |||||||| |||||| ||||||||||   
seq2  --TTTAACCCC-TTTCATGT-ATTTTTCA-TCTATA-AAGAAATGAA--C  130

seq1  GTGGGTAGTTGGGTGAGTGGTGAATGTTCTGGTATAAGTTTGGAAAGAAT  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGGGTAGTTGGGTGAGTGGTG-ATGTTCTGGTATAAGTTTGGAAAGAAT  179

seq1  ATCAGTGATCAAAACACATTGTATACATTTTAATATTTATTTTTGATTAC  250
      ||||| ||||||||||||||||||||| ||||||||||| ||||||||||
seq2  ATCAGGGATCAAAACACATTGTATACA-TTTAATATTTA-TTTTGATTAC  227

seq1  TTTTATTTTTTTGCCCCCTCCAAGTCCACCCTCCCACAGTTCCTCATGCT  300
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTA-TTTTTTGCCCCCTCCAAGTCCA-CCTCCCACAGTTCCTCATGCT  275

seq1  ATTCTTTCTGATCCCTGTCTTCAAGAGGATACACCCATATCT-CCAGGCC  349
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  ATTCTTTCTGATCCCTGTC-TCAAGAGGATACACCCATATCTCCCAGGCC  324

seq1  TCCCCACCCAGGGACTACAAATATCTAGAAGATTAGGTGCTTCTTACCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCAGGGACTACAAATATCTAGAAGATTAGGTGCTTCTTACCCA  374

seq1  CTGAGGCCAGAGCAGGCAGTTCTCTGTCATATATGTGTCCAGGTTCCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCAGAGCAGGCAGTTCTCTGTCATATATGTGTCCAGGTTCCTCC  424

seq1  GAAGAACTTGTGTATGTATGCCTAGAATGTGACCTAGCATCTGAGAGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTGTGTATGTATGCCTAGAATGTGACCTAGCATCTGAGAGATC  474

seq1  TCAGAGGTCTGATTTTATATAACATTAAATTTAAAAAAAGAAAATATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTCTGATTTTATATAACATTAAATTTAAAAAAAGAAAATATAAA  524

seq1  TCTTTGAACTATTTAACACAGAGTCTCCACAGTGTTTGAGCATGGAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAACTATTTAACACAGAGTCTCCACAGTGTTTGAGCATGGAAATG  574

seq1  TTACATGCCAATCACAATAGGTACACTTAAGTTAAAAAAGGAAACCTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCCAATCACAATAGGTACACTTAAGTTAAAAAAGGAAACCTCAG  624

seq1  AGGATACAGAGTCCCCCACTCATGGACCACATCTCTCTGATGGGTATTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACAGAGTCCCCCACTCATGGACCACATCTCTCTGATGGGTATTCT  674

seq1  TGGCCCTAATATGCCCCCTGCTGGTCAAGAACTCACCTGTAGGTAGATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTAATATGCCCCCTGCTGGTCAAGAACTCACCTGTAGGTAGATTT  724

seq1  CCCATCCTTTACACTTAAGTCTTAGTTGAGCAGTAACATATCCATGCAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTTTACACTTAAGTCTTAGTTGAGCAGTAACATATCCATGCAAC  774

seq1  TAATGTGCTTGGTGGGCTCAGATGTAGTGTGAAAAGGATCTTGTTTAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCTTGGTGGGCTCAGATGTAGTGTGAAAAGGATCTTGTTTAAAG  824

seq1  GGAAATGATAACTCATGTCTCAGCATCTGAATTTAAGTTGTTTCTTCATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATAACTCATGTCTCAGCATCTGAATTTAAGTTGTTTCTTCATT  874

seq1  ATCATCAATGATGCTTTCAAAGTTATCTGCTTGCATAGCGGCAGTTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAATGATGCTTTCAAAGTTATCTGCTTGCATAGCGGCAGTTGGAT  924

seq1  CCAGTTCTAAGAGTTCTTATTTGTAATAAGGTGCAAACAAGTGAGATCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTAAGAGTTCTTATTTGTAATAAGGTGCAAACAAGTGAGATCAG  974

seq1  GGTCTTTGTTGCAGTCACCAGACTGTACCTGGGCCAGAGCATCTGAGGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGTTGCAGTCACCAGACTGTACCTGGGCCAGAGCATCTGAGGAC  1024

seq1  AGAATGACAATGATGAGTCTGGAGCTCAGATGCAGCTCCACGTGCATCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACAATGATGAGTCTGGAGCTCAGATGCAGCTCCACGTGCATCCA  1074

seq1  TGTGTGAATTC  1110
      |||||||||||
seq2  TGTGTGAATTC  1085