BAC Information

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BAC

Clone NameB6Ng01-120P12
Chromosome12 (Build37)
Map Location 47,001,433 - 47,030,819
singlet/doubletdoublet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120P12.bB6Ng01-120P12.g
ACCDH924773DH924774
length1,1401,188
definitionDH924773|Mus musculus domesticus DNA, BAC clone: B6Ng01-120P12, 5' end.DH924774|Mus musculus domesticus DNA, BAC clone: B6Ng01-120P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,001,433 - 47,002,592)(47,029,599 - 47,030,819)
sequence
gaattcactttgcaagtggttggtttgtgcaaccggtgctcccatttaaa
aagaccatggattgaactttaccaaaactaggtaagagtttcttcatgaa
tcgatattgtttccacttgttgtccttcaactaccgatgcatgaaggaag
ttgtctaaaaagcaacttaccttttatcattgttagaggtttgggatcac
tcagagattcaccatgaccatgaatgaattttagcaacaagaaaagtgat
ttagtaaatactgacagtggatactctgggcagcaggactgcatccaaga
gcaccttcaaggtgcagctccaaagtacttgagtttgaggtttctaaagg
cagaaatcacaaggctatgcactccctgccttccagaaaccagtagaatg
cacacatcctgacatgcttcttgcctatgtgccatcaagcacacatctgg
tagtcatgctgtcaagggcaagcaagcttgttctcaggagcaaaaccacg
tggtatgtacaagatcagcccccagttatctgttcttgaggacttacagt
taggttcatttttgtttttatagttcccttaaggttagtgattttaaact
ttgaaacatgacgttcaccatcacaacatgagcttgcagctgttgtcctg
aacaactgaaaggaactcctttgcccttttccgtggaaggatgatgtcac
cgcctttctcttttgttcccttaaatgacggaacacaaacactgtttgcc
atattggtttgcacattaataagcgcaacataaaaccaaattgcaaggcc
gtgcttcttcccaagctgttctcccatgttaatgctttcctgcagccctg
acagatgctcagacgccaaaatatcctccagaagacgaggctaatggagc
tactattttatacacgttgggaaccttgaaatcactaatccatttctatg
attcctatagtaaaatatgaacatttgggccaaagacattgtttctaaca
gttattgatatctttatagaaaatcgcagaaagcataaagctcataagaa
agaagaagaaaacatccattcaataattcagagggtgtaaaaatatttca
aatactaccagctcgcccacattcacctcttatgactatc
gaattcccacgtgaactagaactgttttctagtctcaaagtgaatccaaa
aatgtagctagattgtatatacggggaaaaaaacaaaacaaaacaaaaca
ggagagaggataggaaaaaatctaggccagtgttaactcccatatgggat
tcttgatttcttttttctacccagaaggtcaaagccctgcagaattggta
tgcagatcacatccacagcaagtgcagttccagactaggagatgtgctaa
ttggctcacctgcctgaagaaccagggtaccagtcagctgccacgcagtc
tctgagggaagcaggcttaatgcaggacaaaatgttctcgacactgcact
gtctcccatgactgtttcttgcaagcagtctggacaaatacagtggtgac
tggagaaggttcataattattcccggtttataggctaatatgtacattag
ggattttgaatgctatttgattcagaagaaattaaaattaaagccatcta
cccttcaggcttttttttttttttaattgtgtctctacagtattccgaag
agtattttgtatagtatactgcctaagaagaacgtaggtttttggcagcc
atattaacgccctttgagcttgtttcagcattaaaaacatgactaaggct
acgtctctcactggacagtgctgtacaagaaacagccatgttacagatat
gcatgtaatcccttcaactactgcctcaggaaagcaactcactattgctt
attaccaagacagtttctggaaataaggaatgtttctgaaaagaaagaca
atctctagttagctagctatggctttgttctaaccaggatcgagattctc
ggggctccctttgataaggagcttagctctttctgatcctacaagtcaga
ggtaatgggaacagaaacagatgacagctttcctcagttgtttataaccc
gaataacttaccctgctaatgagtagagctttgcatgtttccctgcctat
gtgactcataaatgtacaattataaatatcctgataatgtgtagtcatga
tatgtaatgatgccatgtggatgcttgatgagagagagcattcctaagtt
agagatctgtgctgagcaaatccagagaggtcagagttctaggaggttcg
taatgtatacaactaaggattttccttggtctaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47001433_47002592
seq2: B6Ng01-120P12.b_46_1185

seq1  GAATTCACTTTGCAAGTGGTTGGTTTGTGCAACCGGTGCTCCCATTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGCAAGTGGTTGGTTTGTGCAACCGGTGCTCCCATTTAAA  50

seq1  AAGACCATGGATTGAACTTTACCAAAACTAGGTAAGAGTTTCTTCATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATGGATTGAACTTTACCAAAACTAGGTAAGAGTTTCTTCATGAA  100

seq1  TCGATATTGTTTCCACTTGTTGTCCTTCAACTACCGATGCATGAAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATATTGTTTCCACTTGTTGTCCTTCAACTACCGATGCATGAAGGAAG  150

seq1  TTGTCTAAAAAGCAACTTACCTTTTATCATTGTTAGAGGTTTGGGATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAAAAAGCAACTTACCTTTTATCATTGTTAGAGGTTTGGGATCAC  200

seq1  TCAGAGATTCACCATGACCATGAATGAATTTTAGCAACAAGAAAAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATTCACCATGACCATGAATGAATTTTAGCAACAAGAAAAGTGAT  250

seq1  TTAGTAAATACTGACAGTGGATACTCTGGGCAGCAGGACTGCATCCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAATACTGACAGTGGATACTCTGGGCAGCAGGACTGCATCCAAGA  300

seq1  GCACCTTCAAGGTGCAGCTCCAAAGTACTTGAGTTTGAGGTTTCTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTCAAGGTGCAGCTCCAAAGTACTTGAGTTTGAGGTTTCTAAAGG  350

seq1  CAGAAATCACAAGGCTATGCACTCCCTGCCTTCCAGAAACCAGTAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCACAAGGCTATGCACTCCCTGCCTTCCAGAAACCAGTAGAATG  400

seq1  CACACATCCTGACATGCTTCTTGCCTATGTGCCATCAAGCACACATCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCCTGACATGCTTCTTGCCTATGTGCCATCAAGCACACATCTGG  450

seq1  TAGTCATGCTGTCAAGGGCAAGCAAGCTTGTTCTCAGGAGCAAAACCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATGCTGTCAAGGGCAAGCAAGCTTGTTCTCAGGAGCAAAACCACG  500

seq1  TGGTATGTACAAGATCAGCCCCCAGTTATCTGTTCTTGAGGACTTACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTACAAGATCAGCCCCCAGTTATCTGTTCTTGAGGACTTACAGT  550

seq1  TAGGTTCATTTTTGTTTTTATAGTTCCCTTAAGGTTAGTGATTTTAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCATTTTTGTTTTTATAGTTCCCTTAAGGTTAGTGATTTTAAACT  600

seq1  TTGAAACATGACGTTCACCATCACAACATGAGCTTGCAGCTGTTGTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACATGACGTTCACCATCACAACATGAGCTTGCAGCTGTTGTCCTG  650

seq1  AACAACTGAAAGGAACTCCTTTGCCCTTTTCCGTGGAAGGATGATGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTGAAAGGAACTCCTTTGCCCTTTTCCGTGGAAGGATGATGTCAC  700

seq1  CGCCTTTCTCTTTTGTTCCCTTAAATGACGGAACACAAACACTGTTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTCTCTTTTGTTCCCTTAAATGACGGAACACAAACACTGTTTGCC  750

seq1  ATATTGGTTTGCACATTAATAAGCGCAACATAAAACCAAATTGCAAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTTTGCACATTAATAAGCGCAACATAAAACCAAATTGCAAGGCC  800

seq1  GTGCTTCTTCCCAAGCTGTTCTCCCATGTTAATGCTTTCCTGCAGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTTCCCAAGCTGTTCTCCCATGTTAATGCTTTCCTGCAGCCCTG  850

seq1  ACAGATGCTCAGACGCCAAAATATCCTCCAGAAGACGAGGCTAATGGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCTCAGACGCCAAAATATCCTCCAGAAGACGAGGCTAATGGAGC  900

seq1  TACTA-TTTATACAACGTTGGGAACCTTGAAATCACTAAATCCATTTCTA  949
      ||||| ||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TACTATTTTATAC-ACGTTGGGAACCTTGAAATCACT-AATCCATTTCTA  948

seq1  TGATTCCTAATAGTAAAATATGAACATTT-GGCCAAAGACAATTGTTTCC  998
      |||||||| |||||||||||||||||||| |||||||||| ||||||| |
seq2  TGATTCCT-ATAGTAAAATATGAACATTTGGGCCAAAGAC-ATTGTTT-C  995

seq1  TAACAGTTTAATTGATATCTTTATAGAAAAATCGCAGGAAAGCATAAAGC  1048
      ||||||||  |||||||||||||||| ||||||||| |||||||||||||
seq2  TAACAGTT--ATTGATATCTTTATAG-AAAATCGCA-GAAAGCATAAAGC  1041

seq1  TCATAAGAAAGAAGGAAGAAAAAACAATCAATTCAAATAAATCAGAGGTG  1098
      ||||||||||||| ||||||||    ||| |||| ||||| ||||||| |
seq2  TCATAAGAAAGAA-GAAGAAAA---CATCCATTC-AATAATTCAGAGG-G  1085

seq1  TTAAAAAATAATTTCAAATACATACCCAAGCCTCGCCCACATTTCACCTC  1148
      |  |||||| ||||||||||| ||||  || |||||||||| ||||||||
seq2  TGTAAAAAT-ATTTCAAATAC-TACC--AG-CTCGCCCACA-TTCACCTC  1129

seq1  TTATGAACTATC  1160
      ||||| ||||||
seq2  TTATG-ACTATC  1140

seq1: chr12_47029599_47030819
seq2: B6Ng01-120P12.g_65_1252 (reverse)

seq1  TTTATTAGAATTATATAACAAAGG--AATACTTAGTTGTATACATTCTGT  48
      ||||||||         || ||||  ||| ||||||||||||||||  | 
seq2  TTTATTAG---------ACCAAGGAAAATCCTTAGTTGTATACATTACGA  41

seq1  ACATTCCTAAGGACATTCTTGACTTTCTTGGATTTGCCTCAGCAAACCAG  98
      ||  |||||  || | || |||| |   |||||||| |||||||   |||
seq2  AC-CTCCTA--GA-ACTC-TGACCTCTCTGGATTTG-CTCAGCA---CAG  82

seq1  ATCTCT-ACTTAAGAATGCTCTCTTCCTTCATCAATGTCAT-CACATGGC  146
      |||||| ||||| |||||||||||    |||||||   ||| ||||||||
seq2  ATCTCTAACTTAGGAATGCTCTCT---CTCATCAA--GCATCCACATGGC  127

seq1  TATCATTTCCATTATCATGACTACCACAATTATCAGGATATTTAATAATT  196
       |||||| |   ||||||||||| ||| ||||||||||||||| ||||||
seq2  -ATCATTAC--ATATCATGACTA-CAC-ATTATCAGGATATTT-ATAATT  171

seq1  GTACATTTAATGAGTCACATTAGGCAAGGGAAACATGCAAAGCCTCTACC  246
      |||||||| |||||||||| ||||| |||||||||||||||| ||||| |
seq2  GTACATTT-ATGAGTCACA-TAGGC-AGGGAAACATGCAAAG-CTCTA-C  216

seq1  TCATTAGCCAGGGTAAGTTA-TCGGGTTTAATAAACAAACTGAGGAAAGC  295
      ||||||| |||||||||||| |||||||  |||||| |||||||||||||
seq2  TCATTAG-CAGGGTAAGTTATTCGGGTT--ATAAAC-AACTGAGGAAAGC  262

seq1  TGTCATCTGTTTCTGTTCCCATTACCTCTGAC-TGTAGGATTCAGAAAGA  344
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TGTCATCTGTTTCTGTTCCCATTACCTCTGACTTGTAGGA-TCAGAAAGA  311

seq1  GCTAAGCTCCTTATCAAAGGGAGCCCCGAGAATCTCGATCCTGGTTAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCTCCTTATCAAAGGGAGCCCCGAGAATCTCGATCCTGGTTAGAA  361

seq1  CAAAGCCATAGCTAGCTAACTAGAGATTGTCTTTCTTTTCAGAAACATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATAGCTAGCTAACTAGAGATTGTCTTTCTTTTCAGAAACATTC  411

seq1  CTTATTTCCAGAAACTGTCTTGGTAATAAGCAATAGTGAGTTGCTTTCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCCAGAAACTGTCTTGGTAATAAGCAATAGTGAGTTGCTTTCCT  461

seq1  GAGGCAGTAGTTGAAGGGATTACATGCATATCTGTAACATGGCTGTTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTAGTTGAAGGGATTACATGCATATCTGTAACATGGCTGTTTCT  511

seq1  TGTACAGCACTGTCCAGTGAGAGACGTAGCCTTAGTCATGTTTTTAATGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCACTGTCCAGTGAGAGACGTAGCCTTAGTCATGTTTTTAATGC  561

seq1  TGAAACAAGCTCAAAGGGCGTTAATATGGCTGCCAAAAACCTACGTTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAGCTCAAAGGGCGTTAATATGGCTGCCAAAAACCTACGTTCTT  611

seq1  CTTAGGCAGTATACTATACAAAATACTCTTCGGAATACTGTAGAGACACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAGTATACTATACAAAATACTCTTCGGAATACTGTAGAGACACA  661

seq1  ATTAAAAAAAAAAAAAAGCCTGAAGGGTAGATGGCTTTAATTTTAATTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAAAAAAAGCCTGAAGGGTAGATGGCTTTAATTTTAATTTC  711

seq1  TTCTGAATCAAATAGCATTCAAAATCCCTAATGTACATATTAGCCTATAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATCAAATAGCATTCAAAATCCCTAATGTACATATTAGCCTATAA  761

seq1  ACCGGGAATAATTATGAACCTTCTCCAGTCACCACTGTATTTGTCCAGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGAATAATTATGAACCTTCTCCAGTCACCACTGTATTTGTCCAGAC  811

seq1  TGCTTGCAAGAAACAGTCATGGGAGACAGTGCAGTGTCGAGAACATTTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAAGAAACAGTCATGGGAGACAGTGCAGTGTCGAGAACATTTTG  861

seq1  TCCTGCATTAAGCCTGCTTCCCTCAGAGACTGCGTGGCAGCTGACTGGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATTAAGCCTGCTTCCCTCAGAGACTGCGTGGCAGCTGACTGGTA  911

seq1  CCCTGGTTCTTCAGGCAGGTGAGCCAATTAGCACATCTCCTAGTCTGGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTCTTCAGGCAGGTGAGCCAATTAGCACATCTCCTAGTCTGGAA  961

seq1  CTGCACTTGCTGTGGATGTGATCTGCATACCAATTCTGCAGGGCTTTGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTGCTGTGGATGTGATCTGCATACCAATTCTGCAGGGCTTTGAC  1011

seq1  CTTCTGGGTAGAAAAAAGAAATCAAGAATCCCATATGGGAGTTAACACTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGTAGAAAAAAGAAATCAAGAATCCCATATGGGAGTTAACACTG  1061

seq1  GCCTAGATTTTTTCCTATCCTCTCTCCTGTTTTGTTTTGTTTTGTTTTTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGATTTTTTCCTATCCTCTCTCCTGTTTTGTTTTGTTTTGTTTTTT  1111

seq1  TCCCCGTATATACAATCTAGCTACATTTTTGGATTCACTTTGAGACTAGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTATATACAATCTAGCTACATTTTTGGATTCACTTTGAGACTAGA  1161

seq1  AAACAGTTCTAGTTCACGTGGGAATTC  1221
      |||||||||||||||||||||||||||
seq2  AAACAGTTCTAGTTCACGTGGGAATTC  1188