BAC Information

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BAC

Clone NameB6Ng01-123F17
Chromosome12 (Build37)
Map Location 112,938,182 - 113,110,337
singlet/doubletdoublet
Overlap geneBag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b
Upstream geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik
Downstream geneLOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123F17.bB6Ng01-123F17.g
ACCDH926543DH926544
length718782
definitionDH926543|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F17, 5' end.DH926544|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,109,624 - 113,110,337)(112,938,182 - 112,938,961)
sequence
gaattctagccttctataatatggattctgtgggtcaaactcaaatcagg
ctttgtggcaagcaccttaaccagctgagccatcttgttggcccatcagt
aactgttttaatgtttttggttttggtgtgtgttgtgttgtatttttggt
gctggggatggaacacaggaccttacacatgctcagtgcacactctacca
atgagctggatacctcagcatcagttaagcagctcttctctgctctgata
acatcaggaagacagcatgtggtgtaagtagtaagtcctccacaaatagt
attaaactgagaatagtaaaatcctggcttttatattgaaagacttgtta
gcagtcaggcaaagaaaattctcaaagataatatgattgcatggaattct
gcaaaatgtacatcctaaagaagaaatatgctgggcgtggtggtgcatgc
ctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaa
ggccagcctggtctacaaaagtgagttccaggacagcgaaggctaaacag
agaaaccctgtctcgaaaaacaaaaaaacaaaaaaacaaaaaaaaaacca
aaaaaaaaaaaaaaagaagaagaaaaaagaagaaatataaactggggtgt
gttagtacatggttagtgcatgccagtatcctgaaattctaggcactcta
gggtgaaggcaggaggat
gaattccaggacagccaagactacgccaacatggaaaaccacaacccaga
aagaatccctgggtcacccgcgtgagctgctgcaggcagcagtgtgtctt
cagctgcagccctgcctctgacccgctaggtcatgacttctcaacctctg
ctctctcctggccaatctggtcctgaagctgagcccaggcctctctgcct
gcacctttcccagcctagttcagccaggactgtcttttagacttcaccta
ttcatccactgagctccagctgagcagagttggggctcggcagacacagt
ctggggatacttcagccatagggcctcttccctcagctcacatcctcagg
gaaggggctgggtgggagtggcatgctcagggaatggcagatggagagga
acaaaggtgggcaggagggtgggagacctgcactaccacaggagaggttg
tgagggccattgtccctaagattgacattgcctctctactttatggatat
aaccatctaacaacgcattagtgatgtgtagccccagacaccagagagga
aaagcccacccctgagcacttcagaaccactacaaggcagctgggcatgg
aggcacatactttcaaccccagcacttgggagacagacgtaggtggatct
cttgagttccaggccagcctggtctacagagaaagttccaggccagcctg
gtctacagagcaagttccggggccagcctggtctattgagtaatttccca
ggaaagccagggctacttggaggccctgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113109624_113110337
seq2: B6Ng01-123F17.b_47_764 (reverse)

seq1  ATCCTCCTGCCTTCA-CCTAGAGTG-CTAGAATTACAGGATACTGGCATG  48
      ||||||||||||||| ||||||||| |||||||| |||||||||||||||
seq2  ATCCTCCTGCCTTCACCCTAGAGTGCCTAGAATTTCAGGATACTGGCATG  50

seq1  CACTAACCATGTACTAACACA-CCCAGTTTATATTTCTTC-TTTTTCTTC  96
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  CACTAACCATGTACTAACACACCCCAGTTTATATTTCTTCTTTTTTCTTC  100

seq1  TTCTTTTTTTTTTTTTTTTGGTTTTTTTTTTGTTTTTTTGTTTTTTTGTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTTTTTTTTGGTTTTTTTTTTGTTTTTTTGTTTTTTTGTT  150

seq1  TTTCGAGACAGGGTTTCTCTGTGTAGCCTTCGCTGTCCTGGAACTCACTT  196
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTCGAGACAGGGTTTCTCTGTTTAGCCTTCGCTGTCCTGGAACTCACTT  200

seq1  TTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCC  250

seq1  CAAGTGCTGGGATTAAAGGCATGCACCACCACGCCCAGCATATTTCTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTGGGATTAAAGGCATGCACCACCACGCCCAGCATATTTCTTCT  300

seq1  TTAGGATGTACATTTTGCAGAATTCCATGCAATCATATTATCTTTGAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGTACATTTTGCAGAATTCCATGCAATCATATTATCTTTGAGAA  350

seq1  TTTTCTTTGCCTGACTGCTAACAAGTCTTTCAATATAAAAGCCAGGATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGCCTGACTGCTAACAAGTCTTTCAATATAAAAGCCAGGATTT  400

seq1  TACTATTCTCAGTTTAATACTATTTGTGGAGGACTTACTACTTACACCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCTCAGTTTAATACTATTTGTGGAGGACTTACTACTTACACCAC  450

seq1  ATGCTGTCTTCCTGATGTTATCAGAGCAGAGAAGAGCTGCTTAACTGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTTCCTGATGTTATCAGAGCAGAGAAGAGCTGCTTAACTGATG  500

seq1  CTGAGGTATCCAGCTCATTGGTAGAGTGTGCACTGAGCATGTGTAAGGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTATCCAGCTCATTGGTAGAGTGTGCACTGAGCATGTGTAAGGTC  550

seq1  CTGTGTTCCATCCCCAGCACCAAAAATACAACACAACACACACCAAAACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCCATCCCCAGCACCAAAAATACAACACAACACACACCAAAACC  600

seq1  AAAAACATTAAAACAGTTACTGATGGGCCAACAAGATGGCTCAGCTGGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTAAAACAGTTACTGATGGGCCAACAAGATGGCTCAGCTGGTT  650

seq1  AAGGTGCTTGCCACAAAGCCTGATTTGAGTTTGACCCACAGAATCCATAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTTGCCACAAAGCCTGATTTGAGTTTGACCCACAGAATCCATAT  700

seq1  TATAGAAGGCTAGAATTC  714
      ||||||||||||||||||
seq2  TATAGAAGGCTAGAATTC  718

seq1: chr12_112938182_112938961
seq2: B6Ng01-123F17.g_69_850

seq1  GAATTCCAGGACAGCCAAGACTACGCCAACATGGAAAACCACAACCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAAGACTACGCCAACATGGAAAACCACAACCCAGA  50

seq1  AAGAATCCCTGGGTCACCCGCGTGAGCTGCTGCAGGCAGCAGTGTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCCTGGGTCACCCGCGTGAGCTGCTGCAGGCAGCAGTGTGTCTT  100

seq1  CAGCTGCAGCCCTGCCTCTGACCCGCTAGGTCATGACTTCTCAACCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGCCCTGCCTCTGACCCGCTAGGTCATGACTTCTCAACCTCTG  150

seq1  CTCTCTCCTGGCCAATCTGGTCCTGAAGCTGAGCCCAGGCCTCTCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTGGCCAATCTGGTCCTGAAGCTGAGCCCAGGCCTCTCTGCCT  200

seq1  GCACCTTTCCCAGCCTAGTTCAGCCAGGACTGTCTTTTAGACTTCACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTTCCCAGCCTAGTTCAGCCAGGACTGTCTTTTAGACTTCACCTA  250

seq1  TTCATCCACTGAGCTCCAGCTGAGCAGAGTTGGGGCTCGGCAGACACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCACTGAGCTCCAGCTGAGCAGAGTTGGGGCTCGGCAGACACAGT  300

seq1  CTGGGGATACTTCAGCCATAGGGCCTCTTCCCTCAGCTCACATCCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATACTTCAGCCATAGGGCCTCTTCCCTCAGCTCACATCCTCAGG  350

seq1  GAAGGGGCTGGGTGGGAGTGGCATGCTCAGGGAATGGCAGATGGAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCTGGGTGGGAGTGGCATGCTCAGGGAATGGCAGATGGAGAGGA  400

seq1  ACAAAGGTGGGCAGGAGGGTGGGAGACCTGCACTACCACAGGAGAGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGGGCAGGAGGGTGGGAGACCTGCACTACCACAGGAGAGGTTG  450

seq1  TGAGGGCCATTGTCCCTAAGATTGACATTGCCTCTCTACTTTATGGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCATTGTCCCTAAGATTGACATTGCCTCTCTACTTTATGGATAT  500

seq1  AACCATCTAACAACGCATTAGTGATGTGTAGCCCCAGACACCAGAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTAACAACGCATTAGTGATGTGTAGCCCCAGACACCAGAGAGGA  550

seq1  AAAGCCCACCCCTGAGCACTTCAGAACCACTACAAGGCAGCTGGGCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCACCCCTGAGCACTTCAGAACCACTACAAGGCAGCTGGGCATGG  600

seq1  AGGCACATACTTTCAACCCCAGCACTTGGGAGACAGACGTAGGTGGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATACTTTCAACCCCAGCACTTGGGAGACAGACGTAGGTGGATCT  650

seq1  CTTGAGTTCCAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGCCAGCCTG  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTGAGTTCCAGGCCAGCCTGGTCTACAGAGAAAGTTCCAGGCCAGCCTG  700

seq1  GTCTACAGAGCAAGTTCC-GGGCCAGCCTGGTCTACAGAGCAAGTT-CCA  748
      |||||||||||||||||| ||||||||||||||||  ||| || || |||
seq2  GTCTACAGAGCAAGTTCCGGGGCCAGCCTGGTCTATTGAGTAATTTCCCA  750

seq1  GGACAGCCAGGGCTACATGGAGGCCCTGTCTC  780
      ||| |||||||||||| |||||||||||||||
seq2  GGAAAGCCAGGGCTACTTGGAGGCCCTGTCTC  782