BAC Information

Click to search

BAC

Clone NameB6Ng01-123K13
Chromosome12 (Build37)
Map Location 46,971,159 - 46,972,304
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123K13.bB6Ng01-123K13.g
ACCDH926766DH926767
length1,1391,180
definitionDH926766|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K13, 5' end.DH926767|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgttcattaatgctcctaatgtaattcttcatgtgccttggg
acatgtagttttgtgtccaatttgtgtttattagctaaaaatgtttatat
aacaattacacataggattttagaagcagaattttttgtgacaactcttt
gcattaattaatgtctttgtttattaataaattattaattaataaaatta
catgcatagtttgattggttcatgaagaatttatagatgctaactacaaa
ttgaattgaccaataaattaaactcttcactatttttgtttctaaaacaa
tgtgactttactgtgtgaattaaaggaataaaaggtattaggagacataa
agggacacaattagatttaggatgtatgggcaagcactatggtgatggga
atcctttccttgactgaattgctattctcttgattggcattttgttcact
ccctgatcatcctcgaattggtcacttagtcttattaattctgttcaata
ctcactctaattgcttgagaacattataattgcttaatttcaatttaaaa
attaatacacatattaatttttaatgttttaatatttgtcttcatttctt
gttagtattcttgctgttgtagcaactatagagcattatacagcattaca
tatgcctgagacttcttgctacctgggctacttctcctcttagttagact
atacattattattaaaatatcttgcatgtttaaaaagacttgagattttg
ctaaaccacacagctagagttgatgatataccctgagattacctcatact
taagggtgttatcctagtgtatattcagccagtttgtttaacttgcccta
aaagaacaatgcaacaaccagcatgacttgacttgaatttctcatgtaaa
cagctttccaacctaaattaatgcatatctgtatctaaaatatatgcctt
cccatgctcctaacccagcagcaatacatggataatatggtagtcatttg
ttaaagcatagtagtttgaaatcaaccttaaaaacaaatatctgtcataa
aatgaagcaccatgtgatacctgcttgaagaactttactctttgcttata
tgggggcaatctaagttagctaagagtcagtgaccttca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatattgtactaacggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atgggtggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaaacccttggaaggagttacagagacaaagtttggagctgagataaa
aggatggaccatgtagacaactaccatatccggggatccatcccataatc
agcttccaaatgctgaccaccattgcatacactagcaagattatgctgaa
aggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaa
tatagaagtggatgctcacagtcggctaattggatggatcacatggcccc
aatgaggagcttgagaaaagtaccaaagaagctaagggatctgcaaccct
tataggtggaacaacaatatgaactaccaagaacccgggagctcttgact
ctagctgcctatgtcatccaaaagaaggctaatccgcatcactggaaagg
agaatccattgaacgcaaacctttatttgccagctatcagggaacgcggg
gcctaaaagggatgtcgtgtagagtgatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46971159_46972304
seq2: B6Ng01-123K13.b_48_1186

seq1  GAATTCCATGTTCATTAATGCTCCTAATGTAATTCTTCATGTGCCTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTCATTAATGCTCCTAATGTAATTCTTCATGTGCCTTGGG  50

seq1  ACATGTAGTTTTGTGTCCAATTTGTGTTTATTAGCTAAAAATGTTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGTTTTGTGTCCAATTTGTGTTTATTAGCTAAAAATGTTTATAT  100

seq1  AACAATTACACATAGGATTTTAGAAGCAGAATTTTTTGTGACAACTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTACACATAGGATTTTAGAAGCAGAATTTTTTGTGACAACTCTTT  150

seq1  GCATTAATTAATGTCTTTGTTTATTAATAAATTATTAATTAATAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATTAATGTCTTTGTTTATTAATAAATTATTAATTAATAAAATTA  200

seq1  CATGCATAGTTTGATTGGTTCATGAAGAATTTATAGATGCTAACTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATAGTTTGATTGGTTCATGAAGAATTTATAGATGCTAACTACAAA  250

seq1  TTGAATTGACCAATAAATTAAACTCTTCACTATTTTTGTTTCTAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACCAATAAATTAAACTCTTCACTATTTTTGTTTCTAAAACAA  300

seq1  TGTGACTTTACTGTGTGAATTAAAGGAATAAAAGGTATTAGGAGACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTACTGTGTGAATTAAAGGAATAAAAGGTATTAGGAGACATAA  350

seq1  AGGGACACAATTAGATTTAGGATGTATGGGCAAGCACTATGGTGATGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACAATTAGATTTAGGATGTATGGGCAAGCACTATGGTGATGGGA  400

seq1  ATCCTTTCCTTGACTGAATTGCTATTCTCTTGATTGGCATTTTGTTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCTTGACTGAATTGCTATTCTCTTGATTGGCATTTTGTTCACT  450

seq1  CCCTGATCATCCTCGAATTGGTCACTTAGTCTTATTAATTCTGTTCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCATCCTCGAATTGGTCACTTAGTCTTATTAATTCTGTTCAATA  500

seq1  CTCACTCTAATTGCTTGAGAACATTATAATTGCTTAATTTCAATTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTAATTGCTTGAGAACATTATAATTGCTTAATTTCAATTTAAAA  550

seq1  ATTAATACACATATTAATTTTTAATGTTTTAATATTTGTCTTCATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATACACATATTAATTTTTAATGTTTTAATATTTGTCTTCATTTCTT  600

seq1  GTTAGTATTCTTGCTGTTGTAGCAACTATAGAGCATTATACAGCATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTATTCTTGCTGTTGTAGCAACTATAGAGCATTATACAGCATTACA  650

seq1  TATGCCTGAGACTTCTTGCTACCTGGGCTACTTCTCCTCTTAGTTAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGAGACTTCTTGCTACCTGGGCTACTTCTCCTCTTAGTTAGACT  700

seq1  ATACATTATTATTAAAATATCTTGCATGTTTAAAAAGACTTGAGATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTATTATTAAAATATCTTGCATGTTTAAAAAGACTTGAGATTTTG  750

seq1  CTAAACCACACAGCTAGAGTTGATGATATACCCTGAGATTACCTCATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCACACAGCTAGAGTTGATGATATACCCTGAGATTACCTCATACT  800

seq1  TAAGGGTGTTATCCTAGTGTATATTCAGCCAGTTTGTTTAACTTGCCCTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAGGGTGTTATCCTAGTGTATATTCAGCCAGTTTGTTTAACTTGCCC-T  849

seq1  AAAAGAACAATGCAACAACCAGCATGACTTGACTTGAATTTCTCATGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACAATGCAACAACCAGCATGACTTGACTTGAATTTCTCATGTAA  899

seq1  ACAGCTTTCCAACCTAAATTAATGCATATCTGTATCTTAAAATATATGCC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAGCTTTCCAACCTAAATTAATGCATATCTGTATC-TAAAATATATGCC  948

seq1  TTCCCATGCTCCTAACCCAAGCAGCAATACATGGATAATATGGTAGTCAT  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCCATGCTCCTAACCC-AGCAGCAATACATGGATAATATGGTAGTCAT  997

seq1  TTGTTAAAAGCAATAAGTAGTTTGAAAATCAACTTTATAAAACAAATATC  1050
      ||||| ||||||   ||||||||| |||||||| ||| ||||||||||||
seq2  TTGTT-AAAGCA--TAGTAGTTTG-AAATCAACCTTA-AAAACAAATATC  1042

seq1  TGTCATAAATATTGAAAGCAACATGTAGATA-CTGCTTGAAGACATTTAC  1099
      ||||||||| ||   ||||| ||||| |||| |||||||||||  |||||
seq2  TGTCATAAA-AT--GAAGCACCATGT-GATACCTGCTTGAAGAACTTTAC  1088

seq1  TCTTTGC-TATAT-GGGGCAATCATAGTTAGCT-AGAGTCAGTGA-CTTC  1145
      ||||||| ||||| |||||||||  |||||||| ||||||||||| ||||
seq2  TCTTTGCTTATATGGGGGCAATCTAAGTTAGCTAAGAGTCAGTGACCTTC  1138

seq1  A  1146
      |
seq2  A  1139