BAC Information

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BAC

Clone NameB6Ng01-123K16
Chromosome12 (Build37)
Map Location 118,910,183 - 119,025,437
singlet/doubletdoublet
Overlap geneRapgef5
Upstream genePtprn2, LOC432713, LOC100042461, A930023M06Rik
Downstream geneCdca7l, Dnahc11, Sp4, LOC100042993, LOC668611, EG668615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123K16.bB6Ng01-123K16.g
ACCDH926772DH926773
length1,0601,023
definitionDH926772|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K16, 5' end.DH926773|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,910,183 - 118,911,255)(119,024,412 - 119,025,437)
sequence
gaattcctaaatcttgacaaatactgtttcttaatggcattagactcttg
taaataccaagcaaatgttctggttattgttatcagctccgtagctttac
aaactacttcatatcaccaccccaaaccactgtttttctaaaatacaaat
catctaaatccccaacacatcaaacttactctgtgagcatcgtcaatgtt
ctatttgaatttttgatctccaatattggtcactaagcatttgtttgtag
tgtggacctggtagagaaagcaactatgggtgatatgaaatgtttcccaa
gttcaaacactaaatcagatctgtgaaaattcaaaagtgtatcagtggta
ggattgcagttgattggaaattttcacactttaaataaaaagttcgctgt
cttccacccgtgcaatggctcagttgatagacacttggggcacgtgcctg
gatggatatcagttccttttctgttgctgtgatagaacaccctgacaaag
gcaactttaggaagattgggtttattttgtctctcaattcccaaggggat
gcagtctgtcttgaggggaaggcatagcaggagcagtatgagatcaatca
atcacattttatcagcacacagaaggcagcaagtgggcaggaagtggaac
aaagataaataaataaaaccttaatgcctacccgcagtgacagtacttct
ccagccagcccccagctccctaaggttccttaaccttcccgagcaacacc
accaactgggaaccaggtgttcattcaacacttgagcatgtgggacacat
ttttcattcaaatcacaactggtgacccacgttcaatcccagaatccaca
gaaagactgagagaaagaacccattctacagagttgcactgtacacacgc
accattcgtacaacatgtacacacatggtttttgtttgtttgtttgtttg
ggttttggtttttggttttgtaatcttaaggttccttcttagatcagcct
agaatgggcagcagaaaagtcagagaacccggtaccccatctgcattgag
atagctttgc
gaattctcataaatgaaaatgggaagcccacccccctctattttccatct
tcatggatttttttgtcccttccttctctcctcctctatgacaccctcta
attagtgcactcatcagtgcctctggcaccctgcatgctgtaggtggctg
gcgtgacattggatgcctgcccctgcggtgctatgaggcaccccgcagcg
cacaaacaaaaaacccagaaagcctgacccaactattttcctatgaatag
acccgagctttctttatcgagataaaaaggtgtttgtgtgcatctatttg
cacagagacttgatatgcacataggcataaacacagagggaccttgtgca
acgatgccctatgtgagtgccttagtctaaaaggattcgggttcaagaat
atttgtggggtgtccccaaatagattagaagctcttgaaaaactatcgca
gcatttgttttgaagactttggggaataaaactttttccaaagcactctg
gagttaagcccaattggattttgagtttaaagaggcgtccaggaaaacag
gtgaccttccttccttcctcctgaatctttaataacaccacaaagtggaa
catcaaattggtgttgagaactggtattttagattctatgcagttctagt
ccccttctgtcagctgcacggggtggaaagatgtccgctaccctagcctc
acaggcacatatgtaactagtattttatcaaatgaccaccaagggatgac
catctcttcctaagatgaaaaaggacaatagctctttccagggctcatgc
tccaggaaggctcagttccttcccctctatggagcgctgagatattaatg
ctagtgatgacaattggggagggtttacaatgtgacagcctttcattggg
taagggaaacatcctatagggagtcttcccgttacaccaaagagctagga
gaacagaacccatgaccatctagggtatgagtctgattgtatcatggtga
gcacttaacggcttttcgatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118910183_118911255
seq2: B6Ng01-123K16.b_47_1106

seq1  GAATTCCTAAATCTTGACAAATACTGTTTCTTAATGGCATTAGACTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATCTTGACAAATACTGTTTCTTAATGGCATTAGACTCTTG  50

seq1  TAAATACCAAGCAAATGTTCTGGTTATTGTTATCAGCTCCGTAGCTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCAAGCAAATGTTCTGGTTATTGTTATCAGCTCCGTAGCTTTAC  100

seq1  AAACTACTTCATATCACCACCCCAAACCACTGTTTTTCTAAAATACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTTCATATCACCACCCCAAACCACTGTTTTTCTAAAATACAAAT  150

seq1  CATCTAAATCCCCAACACATCAAACTTACTCTGTGAGCATCGTCAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAATCCCCAACACATCAAACTTACTCTGTGAGCATCGTCAATGTT  200

seq1  CTATTTGAATTTTTGATCTCCAATATTGGTCACTAAGCATTTGTTTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGAATTTTTGATCTCCAATATTGGTCACTAAGCATTTGTTTGTAG  250

seq1  TGTGGACCTGGTAGAGAAAGCAACTATGGGTGATATGAAATGTTTCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCTGGTAGAGAAAGCAACTATGGGTGATATGAAATGTTTCCCAA  300

seq1  GTTCAAACACTAAATCAGATCTGTGAAAATTCAAAAGTGTATCAGTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACACTAAATCAGATCTGTGAAAATTCAAAAGTGTATCAGTGGTA  350

seq1  GGATTGCAGTTGATTGGAAATTTTCACACTTTAAATAAAAAGTTCGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAGTTGATTGGAAATTTTCACACTTTAAATAAAAAGTTCGCTGT  400

seq1  CTTCCACCCGTGCAATGGCTCAGTTGATAGACACTTGGGGCACGTGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCCGTGCAATGGCTCAGTTGATAGACACTTGGGGCACGTGCCTG  450

seq1  GATGGATATCAGTTCCTTTTCTGTTGCTGTGATAGAACACCCTGACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATATCAGTTCCTTTTCTGTTGCTGTGATAGAACACCCTGACAAAG  500

seq1  GCAACTTTAGGAAGATTGGGTTTATTTTGTCTCTCAATTCCCAAGGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTAGGAAGATTGGGTTTATTTTGTCTCTCAATTCCCAAGGGGAT  550

seq1  GCAGTCTGTCTTGAGGGGAAGGCATAGCAGGAGCAGTATGAGATCAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGTCTTGAGGGGAAGGCATAGCAGGAGCAGTATGAGATCAATCA  600

seq1  ATCACATTTTATCAGCACACAGAAGGCAGCAAGTGGGCAGGAAGTGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTTTATCAGCACACAGAAGGCAGCAAGTGGGCAGGAAGTGGAAC  650

seq1  AAAGATAAATAAATAAAACCTTAATGCCTACCCGCAGTGACAGTACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAATAAATAAAACCTTAATGCCTACCCGCAGTGACAGTACTTCT  700

seq1  CCAGCCAGCCCCCAGCTCCCTAAGGTTCCTTAACCTTCCCGAGCAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGCCCCCAGCTCCCTAAGGTTCCTTAACCTTCCCGAGCAACACC  750

seq1  ACCAACTGGGAACCAGGTGTTCATTCAACACTTGAGCATGTGGGACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTGGGAACCAGGTGTTCATTCAACACTTGAGCATGTGGGACACAT  800

seq1  TTTTCATTCAAATCACAACTGGTGACCCACGTTCAATCCCAGAATCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCAAATCACAACTGGTGACCCACGTTCAATCCCAGAATCCACA  850

seq1  GAAAGACTGAGAGAAAGAACCCATTCTACAGAGTTGCACTGTACACACGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTGAGAGAAAGAACCCATTCTACAGAGTTGCACTGTACACACGC  900

seq1  ACCATTCGTACAACATGTACACACATGGTTTTTGTTTGTTTGTTTGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCGTACAACATGTACACACATGGTTTTTGTTTGTTTGTTTGTTTG  950

seq1  GGTTTTGGTTTTTGGTTTTTTGTAATCTTAAGGTTTCCTTTCTTAAGAAT  1000
      |||||||||||||||  ||||||||||||||||||  | ||||||   ||
seq2  GGTTTTGGTTTTTGG--TTTTGTAATCTTAAGGTT--CCTTCTTA--GAT  994

seq1  CAGCCTAGAAATGGGCAGCAGAAAAGTCAGAGAACCCGTTACCCCCATTC  1050
      |||||||| ||||||||||||||||||||||||||||| ||||||   ||
seq2  CAGCCTAG-AATGGGCAGCAGAAAAGTCAGAGAACCCGGTACCCC--ATC  1041

seq1  TGCAATTGTAGATAAAGCTTTGC  1073
      ||| |||| ||||  ||||||||
seq2  TGC-ATTG-AGAT--AGCTTTGC  1060

seq1: chr12_119024412_119025437
seq2: B6Ng01-123K16.g_67_1089 (reverse)

seq1  GTCATCGAAAAGACTGTTTAAGTGCTCA-CATGATTACATTCAGACTCAT  49
      |||||||||||| |   ||||||||||| ||||| |||| ||||||||||
seq2  GTCATCGAAAAGCC--GTTAAGTGCTCACCATGA-TACAATCAGACTCAT  47

seq1  ACCCTTAGATGGTCATTGTGTTTCTGGTTCTCCTAGCTCTTTGGTGTTAA  99
      |||| |||||||||||   | |||| |||||||||||||||||||| |||
seq2  ACCC-TAGATGGTCAT--GGGTTCT-GTTCTCCTAGCTCTTTGGTG-TAA  92

seq1  CGTGAAGACTTCCTATAGGATGTTTCCCTTACCCAATGAAAGGCTGTCAC  149
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGACTCCCTATAGGATGTTTCCCTTACCCAATGAAAGGCTGTCAC  142

seq1  ATTGTAAACCCT-CCCAATTGTCATCACTAGCATTTAATATCTCAGCGCT  198
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  ATTGTAAACCCTCCCCAATTGTCATCACTAGCA-TTAATATCTCAGCGCT  191

seq1  -CATAGA-GGGAAGGAACTGAGCC-TGCTGGAGCATGAGCCCTGGAAAGA  245
       |||||| |||||||||||||||| | |||||||||||||||||||||||
seq2  CCATAGAGGGGAAGGAACTGAGCCTTCCTGGAGCATGAGCCCTGGAAAGA  241

seq1  GCTAATGTCCTTTTTCATCTTAGGAAGAGATGGTCATCCCTTGGTGGTCA  295
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGTCCTTTTTCATCTTAGGAAGAGATGGTCATCCCTTGGTGGTCA  291

seq1  TTTGAT-AAATACTAGTTACATATGTGCCTGTGAGGCTAGGGTAGCGGAC  344
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAAATACTAGTTACATATGTGCCTGTGAGGCTAGGGTAGCGGAC  341

seq1  ATCTTTCCACCCCGTGCAGCTGACAGAAGGGGACTAGAACTGCATAGAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCACCCCGTGCAGCTGACAGAAGGGGACTAGAACTGCATAGAAT  391

seq1  CTAAAATACCAGTTCTCAACACCAATTTGATGTTCCACTTTGTGGTGTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATACCAGTTCTCAACACCAATTTGATGTTCCACTTTGTGGTGTTA  441

seq1  TTAAAGATTCAGGAGGAAGGAAGGAAGGTCACCTGTTTTCCTGGACGCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTCAGGAGGAAGGAAGGAAGGTCACCTGTTTTCCTGGACGCCT  491

seq1  CTTTAAACTCAAAATCCAATTGGGCTTAACTCCAGAGTGCTTTGGAAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACTCAAAATCCAATTGGGCTTAACTCCAGAGTGCTTTGGAAAAA  541

seq1  GTTTTATTCCCCAAAGTCTTCAAAACAAATGCTGCGATAGTTTTTCAAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTCCCCAAAGTCTTCAAAACAAATGCTGCGATAGTTTTTCAAGA  591

seq1  GCTTCTAATCTATTTGGGGACACCCCACAAATATTCTTGAACCCGAATCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAATCTATTTGGGGACACCCCACAAATATTCTTGAACCCGAATCC  641

seq1  TTTTAGACTAAGGCACTCACATAGGGCATCGTTGCACAAGGTCCCTCTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACTAAGGCACTCACATAGGGCATCGTTGCACAAGGTCCCTCTGT  691

seq1  GTTTATGCCTATGTGCATATCAAGTCTCTGTGCAAATAGATGCACACAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGCCTATGTGCATATCAAGTCTCTGTGCAAATAGATGCACACAAA  741

seq1  CACCTTTTTATCTCGATAAAGAAAGCTCGGGTCTATTCATAGGAAAATAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTTATCTCGATAAAGAAAGCTCGGGTCTATTCATAGGAAAATAG  791

seq1  TTGGGTCAGGCTTTCTGGGTTTTTTGTTTGTGCGCTGCGGGGTGCCTCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCAGGCTTTCTGGGTTTTTTGTTTGTGCGCTGCGGGGTGCCTCAT  841

seq1  AGCACCGCAGGGGCAGGCATCCAATGTCACGCCAGCCACCTACAGCATGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGCAGGGGCAGGCATCCAATGTCACGCCAGCCACCTACAGCATGC  891

seq1  AGGGTGCCAGAGGCACTGATGAGTGCACTAATTAGAGGGTGTCATAGAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCCAGAGGCACTGATGAGTGCACTAATTAGAGGGTGTCATAGAGG  941

seq1  AGGAGAGAAGGAAGGGACAAAAAAATCCATGAAGATGGAAAATAGAGGGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAGGAAGGGACAAAAAAATCCATGAAGATGGAAAATAGAGGGG  991

seq1  GGTGGGCTTCCCATTTTCATTTATGAGAATTC  1026
      ||||||||||||||||||||||||||||||||
seq2  GGTGGGCTTCCCATTTTCATTTATGAGAATTC  1023