BAC Information

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BAC

Clone NameB6Ng01-125C14
Chromosome12 (Build37)
Map Location 83,812,552 - 83,994,728
singlet/doubletdoublet
Overlap geneRgs6
Upstream geneMap3k9, Pcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125C14.bB6Ng01-125C14.g
ACCDH927876DH927877
length1,0891,123
definitionDH927876|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C14, 5' end.DH927877|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,812,552 - 83,813,644)(83,993,599 - 83,994,728)
sequence
gaattccacacttgacacttgaccacctatggctcctgagaggcacaatc
ctttgggggacagttgataatttacgttttcatttagtgtggtggaagat
ttgtttgggacagcaaggaaagaaaaatcttggttttaagagtcagaaaa
ttctggatttgacccaaactatatttagatactatttccccaggccaagg
ggcaatcatgaagaaaacaaacaataaatgctagataggatgcaggggaa
agggaattgatgtagactattggtgagatgtaaataaataggggcagccg
tcatggagatgaacgcacagattcttcacaaaacaaaaatagaagtatga
tatgattcagctgtaacagtcctgagtatgtacccaaagggatggaggcc
agcacaagcagagagagatagcggcataatgttctcaacagctgagttat
agaatcagcccaggtgtcatcaacaaaggaatggataaagaaaattcagt
gtttgtacacaatgggattttacacagccataaagaagagcgagactatg
ccattttcaggaaggcagaaagatctgaggctcttaactcattcccacct
atataaaaaaccccttttaagtttttttctttgtctaaggtgagaaagtt
cttgctacctcctgcacacatccttttagtggagagtccctattttcctt
tccattttcctggccacccaactgctttctctctccctccgcaattcaac
agaaagaggaaagccatgccctagtgtgacacgagggagtggagtggact
gggtcttccttttgattcagaatggagctgtgcattggactgtctcccgt
caggcatttggaactttccaggcaatcagaactctaaccggtgctttggc
ccatatttcaaggagagcttgcactttgggtagagatacttttgcctttc
tgcagaaattttccttttaaagagaggaaaagaatattttctatttgctc
tctaaatcataggccaggcatagttgtctttttaaaatgtaattgttagt
gtgtgtgtgtgtgttgtgtatcgcatgcagacaaagtat
gaattcatcatctttccaggcatcttgcactttgaaaattatgaaaggcc
tgggtcctgattcccatagatgtgtgttcatcaatatgcagagtttcaca
tctcatttctaaggatttacaggcctgtgggcacgggctctaacttaaga
acctttgacctgagctgaaaccactcagtctgctcttccgtaggctcaca
tgagttttcctggcaaggaggaaaatagcccgggagtgggtgacttggat
gaatgcaacgcccaggaactcagccactcacactctgactcacaccttta
agcctgtcagaaatgccaccaagattttgcttcctcatcaaaatattgct
ggttacctgtatgaggtgacaagtccccagctttcctctgttcattcact
gaaacttagagccatatttaacaaatctccagttgaaggtatttgtaata
agactccatgggctcctggtcagcctgagcctttctgtatattttctgcc
ttagtgaatgtggttggtgttctagggtatgtgtgctgccatttcagtta
gcttggatatacacgtaagttactccaagcttgatctgggccacttgtgg
atcatacttttaagttattcaccttgggaaaaaaatacaataacctacag
tgtcatgtctgaagacacataatgtgctataacaaaacatcctacattaa
tgaataaaatactgtagtatactcaaatctggtattttcacttaatacat
tcaagtatctattttagtaagttacatctattgtattgtgttactggctt
ctattattttgtagtatttatttgtgctttatttactaaagtgcccacta
atagacactggggcttattcagtattgagatttttataaatatctttcag
tgctatgaccgttaacatttgggattttgatgctgtgaagtctggtttag
agtctccgaagaaatgggtactttgtgaatttagttttctgcctagaagc
aaattccttgaagcttacagtacttagatgcaatttccctttcaattagt
tcttgaattctaagaatgagtaaaacatctcaacctacagcaatggccac
cctgtttccccaaggtaaacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_83812552_83813644
seq2: B6Ng01-125C14.b_49_1137

seq1  GAATTCCACACTTGACACTTGACCACCTATGGCTCCTGAGAGGCACAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTTGACACTTGACCACCTATGGCTCCTGAGAGGCACAATC  50

seq1  CTTTGGGGGACAGTTGATAATTTACGTTTTCATTTAGTGTGGTGGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGGACAGTTGATAATTTACGTTTTCATTTAGTGTGGTGGAAGAT  100

seq1  TTGTTTGGGACAGCAAGGAAAGAAAAATCTTGGTTTTAAGAGTCAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGGACAGCAAGGAAAGAAAAATCTTGGTTTTAAGAGTCAGAAAA  150

seq1  TTCTGGATTTGACCCAAACTATATTTAGATACTATTTCCCCAGGCCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATTTGACCCAAACTATATTTAGATACTATTTCCCCAGGCCAAGG  200

seq1  GGCAATCATGAAGAAAACAAACAATAAATGCTAGATAGGATGCAGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCATGAAGAAAACAAACAATAAATGCTAGATAGGATGCAGGGGAA  250

seq1  AGGGAATTGATGTAGACTATTGGTGAGATGTAAATAAATAGGGGCAGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTGATGTAGACTATTGGTGAGATGTAAATAAATAGGGGCAGCCG  300

seq1  TCATGGAGATGAACGCACAGATTCTTCACAAAACAAAAATAGAAGTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGATGAACGCACAGATTCTTCACAAAACAAAAATAGAAGTATGA  350

seq1  TATGATTCAGCTGTAACAGTCCTGAGTATGTACCCAAAGGGATGGAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCAGCTGTAACAGTCCTGAGTATGTACCCAAAGGGATGGAGGCC  400

seq1  AGCACAAGCAGAGAGAGATAGCGGCATAATGTTCTCAACAGCTGAGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGCAGAGAGAGATAGCGGCATAATGTTCTCAACAGCTGAGTTAT  450

seq1  AGAATCAGCCCAGGTGTCATCAACAAAGGAATGGATAAAGAAAATTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGCCCAGGTGTCATCAACAAAGGAATGGATAAAGAAAATTCAGT  500

seq1  GTTTGTACACAATGGGATTTTACACAGCCATAAAGAAGAGCGAGACTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACACAATGGGATTTTACACAGCCATAAAGAAGAGCGAGACTATG  550

seq1  CCATTTTCAGGAAGGCAGAAAGATCTGAGGCTCTTAACTCATTCCCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCAGGAAGGCAGAAAGATCTGAGGCTCTTAACTCATTCCCACCT  600

seq1  ATATAAAAAACCCCTTTTAAGTTTTTTTCTTTGTCTAAGGTGAGAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAACCCCTTTTAAGTTTTTTTCTTTGTCTAAGGTGAGAAAGTT  650

seq1  CTTGCTACCTCCTGCACACATCCTTTTAGTGGAGAGTCCCTATTTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTACCTCCTGCACACATCCTTTTAGTGGAGAGTCCCTATTTTCCTT  700

seq1  TCCATTTTCCTGGCCACCCAACTGCTTTCTCTCTCCCTCCGCAATTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCCTGGCCACCCAACTGCTTTCTCTCTCCCTCCGCAATTCAAC  750

seq1  AGAAAGAGGAAAGCCATGCCCTAGTGTGACACGAGGGAGTGGAGTGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAAAGCCATGCCCTAGTGTGACACGAGGGAGTGGAGTGGACT  800

seq1  GGGTCTTCCTTTTGATTCAGAATGGAGCTGTGCATTGGACTGTCTCCCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCCTTTTGATTCAGAATGGAGCTGTGCATTGGACTGTCTCCCGT  850

seq1  CAGGCATTTGGAACTTTCCAGGCAATCAGAACTCTAACCGGTGCTTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTTGGAACTTTCCAGGCAATCAGAACTCTAACCGGTGCTTTGGC  900

seq1  CCATA-TTCCAGGAGAGCTTGCACTTTGGGTAGAGATAC-TTTGCCTTTC  948
      ||||| ||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CCATATTTCAAGGAGAGCTTGCACTTTGGGTAGAGATACTTTTGCCTTTC  950

seq1  TGCAGAAATTTTCCTTTTAAAGAGAGGACAAAGAAATATGTCTATTTGCT  998
      |||||||||||||||||||||||||||| ||||||   | ||||||||||
seq2  TGCAGAAATTTTCCTTTTAAAGAGAGGA-AAAGAATATTTTCTATTTGCT  999

seq1  CTCTAAAATCATAGGCCAAGCCATAGTTGTTCTTTTTAAAAATGTAATTG  1048
      |||| |||||||||||| || |||||||| ||||||| ||||||||||||
seq2  CTCT-AAATCATAGGCC-AGGCATAGTTG-TCTTTTT-AAAATGTAATTG  1045

seq1  TTAAGTGTGTGTGTGTGTG-TGTGTATACGCATGCAGACAAAGTAT  1093
      || |||||||||||||||| ||||||| ||||||||||||||||||
seq2  TT-AGTGTGTGTGTGTGTGTTGTGTAT-CGCATGCAGACAAAGTAT  1089

seq1: chr12_83993599_83994728
seq2: B6Ng01-125C14.g_69_1191 (reverse)

seq1  GTTGATTACCTGTGGGGAACAGGGTGGGCATTGGCTGTAGGTTTGAGATG  50
      |||| ||||||  ||| |||||||||| |||| |||||||| ||||||||
seq2  GTTGTTTACCTTGGGGAAACAGGGTGGCCATT-GCTGTAGG-TTGAGATG  48

seq1  -TTTACTCATTCTTAGAATTCAAGAACTAAGTGGAAAGTGAAAATTGCAT  99
       ||||||||||||||||||||||||||||| | ||||| | |||||||||
seq2  TTTTACTCATTCTTAGAATTCAAGAACTAA-TTGAAAG-GGAAATTGCAT  96

seq1  CTAAGTACTGTTAGCTCCAAGGAATTTGCTTCTAGGCAAGAAAACTAAAT  149
      ||||||||||| |||| |||||||||||||||||||| ||||||||||||
seq2  CTAAGTACTGTAAGCTTCAAGGAATTTGCTTCTAGGC-AGAAAACTAAAT  145

seq1  TCTACAAAGTACCCATTTCTTCGGAGACTTCTAAACCAGACTTCACAGCA  199
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TC-ACAAAGTACCCATTTCTTCGGAGAC-TCTAAACCAGACTTCACAGCA  193

seq1  TCAAAAATCCCAAATGTTAACGGTCATAGCACTGAAAGATATTTATAAAA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-AAAATCCCAAATGTTAACGGTCATAGCACTGAAAGATATTTATAAAA  242

seq1  ATCTCATTACTGAATAAGCCCCAGTGTCTATTAGTGGGCACTTTAGTAAA  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATACTGAATAAGCCCCAGTGTCTATTAGTGGGCACTTTAGTAAA  292

seq1  TAAAGCACAAATAAATACTACAAAATAATAGAAGCCAGTAACACAATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACAAATAAATACTACAAAATAATAGAAGCCAGTAACACAATACA  342

seq1  ATAGATGTAACTTACTAAAATAGATACTTGAATGTATTAAGTGAAAATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTAACTTACTAAAATAGATACTTGAATGTATTAAGTGAAAATAC  392

seq1  CAGATTTGAGTATACTACAGTATTTTATTCATTAATGTAGGATGTTTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGAGTATACTACAGTATTTTATTCATTAATGTAGGATGTTTTGT  442

seq1  TATAGCACATTATGTGTCTTCAGACATGACACTGTAGGTTATTGTATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCACATTATGTGTCTTCAGACATGACACTGTAGGTTATTGTATTTT  492

seq1  TTTCCCAAGGTGAATAACTTAAAAGTATGATCCACAAGTGGCCCAGATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGGTGAATAACTTAAAAGTATGATCCACAAGTGGCCCAGATCA  542

seq1  AGCTTGGAGTAACTTACGTGTATATCCAAGCTAACTGAAATGGCAGCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGAGTAACTTACGTGTATATCCAAGCTAACTGAAATGGCAGCACA  592

seq1  CATACCCTAGAACACCAACCACATTCACTAAGGCAGAAAATATACAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTAGAACACCAACCACATTCACTAAGGCAGAAAATATACAGAAA  642

seq1  GGCTCAGGCTGACCAGGAGCCCATGGAGTCTTATTACAAATACCTTCAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGCTGACCAGGAGCCCATGGAGTCTTATTACAAATACCTTCAAC  692

seq1  TGGAGATTTGTTAAATATGGCTCTAAGTTTCAGTGAATGAACAGAGGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTTGTTAAATATGGCTCTAAGTTTCAGTGAATGAACAGAGGAAA  742

seq1  GCTGGGGACTTGTCACCTCATACAGGTAACCAGCAATATTTTGATGAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGACTTGTCACCTCATACAGGTAACCAGCAATATTTTGATGAGGA  792

seq1  AGCAAAATCTTGGTGGCATTTCTGACAGGCTTAAAGGTGTGAGTCAGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATCTTGGTGGCATTTCTGACAGGCTTAAAGGTGTGAGTCAGAGT  842

seq1  GTGAGTGGCTGAGTTCCTGGGCGTTGCATTCATCCAAGTCACCCACTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGCTGAGTTCCTGGGCGTTGCATTCATCCAAGTCACCCACTCCC  892

seq1  GGGCTATTTTCCTCCTTGCCAGGAAAACTCATGTGAGCCTACGGAAGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATTTTCCTCCTTGCCAGGAAAACTCATGTGAGCCTACGGAAGAGC  942

seq1  AGACTGAGTGGTTTCAGCTCAGGTCAAAGGTTCTTAAGTTAGAGCCCGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGTGGTTTCAGCTCAGGTCAAAGGTTCTTAAGTTAGAGCCCGTG  992

seq1  CCCACAGGCCTGTAAATCCTTAGAAATGAGATGTGAAACTCTGCATATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGCCTGTAAATCCTTAGAAATGAGATGTGAAACTCTGCATATTG  1042

seq1  ATGAACACACATCTATGGGAATCAGGACCCAGGCCTTTCATAATTTTCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACACATCTATGGGAATCAGGACCCAGGCCTTTCATAATTTTCAA  1092

seq1  AGTGCAAGATGCCTGGAAAGATGATGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  AGTGCAAGATGCCTGGAAAGATGATGAATTC  1123