BAC Information

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BAC

Clone NameB6Ng01-125P18
Chromosome19 (Build37)12 (Build37)
Map Location 31,775,268 - 31,776,23377,754,190 - 77,754,731
singlet/doubletsingletsinglet
Overlap genePrkg1
Upstream geneLOC625995, Cstf2t, 8430431K14Rik
Downstream gene1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125P18.bB6Ng01-125P18.g
ACCDH928470DH928471
length961930
definitionDH928470|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P18, 5' end.DH928471|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,775,268 - 31,776,233)(77,754,190 - 77,754,731)
sequence
gaattcttccaggattatgactttagaagagggagagtgctcaggagtaa
gcagaggagaggttctcctagccctgtccccatcagataagaatactgct
gccattcttactcagcatccaccaacttgaccagtggccaggacacacac
aaaactctagcaacactgttaatgtttctcgcctttctatatatttaaaa
atgtgttcttgaagtatgtagaacaagaaactgctggctatgtgaatcaa
aatacttacaaggggcagtagtgaacgccacaagctagagaactgagaca
atttaaaattaggtgcccacaattacatctctaaatttagcatggtttcc
tccaacaggaaaaaaaaattgtttttgttgaagcttttaagaagaagtag
gccagttggtaacttgctaacagagggaaataacacacacacacacacac
acacacacacacacacacagagctgtgtgtttgtgtcaacatgaagtttc
ttttccggcctcaaacttagctttaaagaatagggggcagaggaatataa
gatccagagatcagggaggcctggcacagagcagtgacttcaggacatca
cagggtcttagcactcatggactccagctgccatgttacctgcacaagac
ttgtacaagaacaagttgttgtagttgccatcaacattccatcaaggagc
agtgaatggttataaaactgcatcccagcttagcagccattgacagtgaa
tggctacggggagcgatgaagtcagttttcttgagggatgtagctcttag
agcattatttgtctttcactggatgattctacacccatgtacatttaaaa
agcagtaactgaactcagtgcttatttaaaaaaaaaagtaggaggagaag
aaaagatgaagagaggagcaaggaaaggaaagacatcagttgggtgagtg
ggtgggtgggt
gaattcatgcagttgaatctttctcaacagtctgttttacgggaacactt
tattaccgccattccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaaccttcattaccataacccgcagtt
ctggttccggaatgagggatctttcttgcgccggtgatggttaactcccg
tcccgagttttcttggattttctcgtcccggattttctcgtcccggattt
tctcgtcccgggtttcggcaccaactcttaaacgcgttttcacgaccggc
caggaagaacacaacaaaccagaatcttctgcggcaaaactttattgctt
acatcttcaggagccaggagcgcaagccccaagccccaaaaacgaaagcc
ccccacttacatctttaggagccagagcgccagcgcgccagagcgccagc
aagagctctattgtttacatctttaggagcaagagagccagcgccagaga
gcaaaagcgcaagagcgcaagcaagagagagaatggcggaaaccccttcc
cttttaaggagaattatccttcgcctaggacgcatcactccctgattggc
tgcagcccatggccgagtaaaggcagagtacatgtagtggtaaaataccc
ttggcacatgcgcagattatttgtttaccacttagaacacaggatgtcag
cgccatcttgtgacggcgaatgtgggggcggctcccaacagactggtcac
tggtcagccattccatcagtctctgctccatttttgaccctgtgtttctt
ttcgacaggagcaatttagtgttgaaagttttgtagatgggttgatgtcc
cgatctctttactgccaggtcctttcaactactggagtggtctcttcagg
ttcaacatcctcactgttgggcattttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31775268_31776233
seq2: B6Ng01-125P18.b_49_1009

seq1  GAATTCTTCCAGGATTATGACTTTAGAAGAGGGAGAGTGCTCAGGAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAGGATTATGACTTTAGAAGAGGGAGAGTGCTCAGGAGTAA  50

seq1  GCAGAGGAGAGGTTCTCCTAGCCCTGTCCCCATCAGATAAGAATACTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAGAGGTTCTCCTAGCCCTGTCCCCATCAGATAAGAATACTGCT  100

seq1  GCCATTCTTACTCAGCATCCACCAACTTGACCAGTGGCCAGGACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTTACTCAGCATCCACCAACTTGACCAGTGGCCAGGACACACAC  150

seq1  AAAACTCTAGCAACACTGTTAATGTTTCTCGCCTTTCTATATATTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTAGCAACACTGTTAATGTTTCTCGCCTTTCTATATATTTAAAA  200

seq1  ATGTGTTCTTGAAGTATGTAGAACAAGAAACTGCTGGCTATGTGAATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCTTGAAGTATGTAGAACAAGAAACTGCTGGCTATGTGAATCAA  250

seq1  AATACTTACAAGGGGCAGTAGTGAACGCCACAAGCTAGAGAACTGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTACAAGGGGCAGTAGTGAACGCCACAAGCTAGAGAACTGAGACA  300

seq1  ATTTAAAATTAGGTGCCCACAATTACATCTCTAAATTTAGCATGGTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATTAGGTGCCCACAATTACATCTCTAAATTTAGCATGGTTTCC  350

seq1  TCCAACAGGAAAAAAAAATTGTTTTTGTTGAAGCTTTTAAGAAGAAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGGAAAAAAAAATTGTTTTTGTTGAAGCTTTTAAGAAGAAGTAG  400

seq1  GCCAGTTGGTAACTTGCTAACAGAGGGAAATAACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTGGTAACTTGCTAACAGAGGGAAATAACACACACACACACACAC  450

seq1  ACACACACACACACACACAGAGCTGTGTGTTTGTGTCAACATGAAGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACAGAGCTGTGTGTTTGTGTCAACATGAAGTTTC  500

seq1  TTTTCCGGCCTCAAACTTAGCTTTAAAGAATAGGGGGCAGAGGAATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGGCCTCAAACTTAGCTTTAAAGAATAGGGGGCAGAGGAATATAA  550

seq1  GATCCAGAGATCAGGGAGGCCTGGCACAGAGCAGTGACTTCAGGACATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGAGATCAGGGAGGCCTGGCACAGAGCAGTGACTTCAGGACATCA  600

seq1  CAGGGTCTTAGCACTCATGGACTCCAGCTGCCATGTTACCTGCACAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTTAGCACTCATGGACTCCAGCTGCCATGTTACCTGCACAAGAC  650

seq1  TTGTACAAGAACAAGTTGTTGTAGTTGCCATCAACATTCCATCAAGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAGAACAAGTTGTTGTAGTTGCCATCAACATTCCATCAAGGAGC  700

seq1  AGTGAATGGTTATAAAACTGCATCCCAGCTTAGCAGCCATTGACAGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGGTTATAAAACTGCATCCCAGCTTAGCAGCCATTGACAGTGAA  750

seq1  TGGCTACGGGGAGCGATGAAGTCAGTTTTCTTGAGGGATGTAGCTCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACGGGGAGCGATGAAGTCAGTTTTCTTGAGGGATGTAGCTCTTAG  800

seq1  AGCATTATTTGTCTTTCACTGGATGATTCTACACCCATGTACATTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATTTGTCTTTCACTGGATGATTCTACACCCATGTACATTTAAAA  850

seq1  AGCAGTAACTGAACTCAGTGCTTATTTAAAAAAAAAAGTAGGAGGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCAGTAACTGAACTCAGTGCTTATTTAAAAAAAAAAGTAGGAGGAGAA-  899

seq1  GAAAAAGATGAAGAGAGGAGCAAAGGAAAGGAAAAGACATCAAGTTGGGT  950
        ||||||||||||||||||| ||||||||| ||||||||| ||||||||
seq2  -GAAAAGATGAAGAGAGGAGC-AAGGAAAGG-AAAGACATC-AGTTGGGT  945

seq1  GAGTGGGTGGGTGGGT  966
      ||||||||||||||||
seq2  GAGTGGGTGGGTGGGT  961

seq1: chr12_77754190_77754731
seq2: B6Ng01-125P18.g_69_650 (reverse)

seq1  CGTCCTAGGCGGAGAATAATTCTCCTTAAAAAGGGACGGGGTTT-CGCCA  49
      ||||||||||| || |||||||||||| |||||||| ||||||| |||||
seq2  CGTCCTAGGCGAAGGATAATTCTCCTT-AAAAGGGAAGGGGTTTCCGCCA  49

seq1  TTCTCCCTTT---TTGCTCTCTT--GCTCTTGCTCTCTTGCTCTCTTGCG  94
      ||||| || |   |||| |||||  ||| ||||||||| |  | || || 
seq2  TTCTCTCTCTTGCTTGCGCTCTTGCGCTTTTGCTCTCTGG--CGCTGGCT  97

seq1  CTCTGGCTCCTAAAAATGTAAGCAATAGAGCTCTTGCT------------  132
      |||| ||||||||| |||||| ||||||||||||||||            
seq2  CTCTTGCTCCTAAAGATGTAAACAATAGAGCTCTTGCTGGCGCTCTGGCG  147

seq1  CTCTTGCTCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTGCTCT--  180
      | || || ||||||||||||||||||||||     | ||| | | | |  
seq2  CGCTGGCGCTCTGGCTCCTAAAGATGTAAG-TGGGGGGCTTTCGTTTTTG  196

seq1  ----------CTTGCACT-CTTGCTCCTGAAGATGTAAGCAATAAAGTTT  219
                ||||| || || ||||||||||||||||||||||||||||
seq2  GGGCTTGGGGCTTGCGCTCCTGGCTCCTGAAGATGTAAGCAATAAAGTTT  246

seq1  TGCCGCAGAAGATTCCGGTTTGTTGCGTTCTTCCTGGCCGGTCGCGAGAA  269
      ||||||||||||||| ||||||||| |||||||||||||||||| || ||
seq2  TGCCGCAGAAGATTCTGGTTTGTTGTGTTCTTCCTGGCCGGTCGTGAAAA  296

seq1  CGCGTGTAAGAGTTGGTGCCGAAACCCGGGACGAGAAAACCCGGGACGAG  319
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGCGTTTAAGAGTTGGTGCCGAAACCCGGGACGAGAAAATCCGGGACGAG  346

seq1  AAATCCTGGGACG----------AGAAAACCCGGGACGG----TTACCAT  355
      |||  | ||||||          ||||||| ||||||||    | |||||
seq2  AAAATCCGGGACGAGAAAATCCAAGAAAACTCGGGACGGGAGTTAACCAT  396

seq1  CACCGGCGCAAGGAAGATCCCTCATTCCGGAACAAGAACTGCGGGTCATG  405
      |||||||||||| |||||||||||||||||||| |||||||||||| |||
seq2  CACCGGCGCAAGAAAGATCCCTCATTCCGGAACCAGAACTGCGGGTTATG  446

seq1  GTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGT  455
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAAG-GTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGT  495

seq1  GAATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCCGTA  505
      |||||||||||||||||||||||||| || |||||| |||||||||||||
seq2  GAATTCAGAACTCTTCAGCTGGGGAATGGCGGTAATAAAGTGTTCCCGTA  545

seq1  AAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  542
      ||||||||||||||||| ||||||||||| |||||||
seq2  AAACAGACTGTTGAGAAAGATTCAACTGCATGAATTC  582